Gcaud3394.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3394.t1
Unique Name	Gcaud3394.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_100_length_51433_cov_4.606891	contig	NODE_100_length_51433_cov_4.606891:28162..30033 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708705.1
PFAMs	PK,PK_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00015
KEGG ko	ko:K00873
KEGG Reaction	R00200,R00430,R01138,R01858,R02320
KEGG Pathway	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230
KEGG Module	M00001,M00002,M00049,M00050
GOs	GO:0000003,GO:0000287,GO:0003006,GO:0003674,GO:0003824,GO:0004743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006629,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009791,GO:0009987,GO:0010035,GO:0010038,GO:0010154,GO:0010431,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0021700,GO:0022414,GO:0030955,GO:0031420,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042866,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046686,GO:0046700,GO:0046872,GO:0046939,GO:0048316,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0061458,GO:0071695,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue	6.28e-203
EggNOG OGs	COG0469@1\|root,KOG2323@2759\|Eukaryota
EC	2.7.1.40
Description	pyruvate kinase activity
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3394	Gcaud3394	Gracilaria caudata M_176_S67 male	gene	NODE_100_length_51433_cov_4.606891 28162..30033 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3394.t1.stop1	Gcaud3394.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_100_length_51433_cov_4.606891 28162..28164 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3394.t1.CDS1	Gcaud3394.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_100_length_51433_cov_4.606891 28162..30033 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3394.t1.exon1	Gcaud3394.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_100_length_51433_cov_4.606891 28162..30033 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3394.t1.start1	Gcaud3394.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_100_length_51433_cov_4.606891 30031..30033 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3394.t1	Gcaud3394.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_100_length_51433_cov_4.606891 28162..30033 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_100_length_51433_cov_4.606891:28162..30033-
coding sequence from alignment at NODE_100_length_51433_cov_4.606891:28162..30033-

mRNA sequence

>Gcaud3394.t1 ID=Gcaud3394.t1|Name=Gcaud3394.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp
MANILESVPVQFRSSLLKLPEDAEVANVGERHTKIVGTVGPSTCDPDNLL
RLIAGGVNLVRLNLCHGDYEWHRKVIENIRDINLNTAFVAGVMIDLGSFD
TVRLGEFSRNPVLEVGDSFTLTVRHEAEYPTAVSEVSLDGFIDLPEKGDM
IQCQAEGGGVVELLVKEIEGLDILCEVVSPGELRSRGTINIRGKSINVTP
RAENEDLNTSIARAVLGCPPDQLEFAISERVEYVALSFVESADQVLAVRN
LLRNRRANIGVIAKIESPNALRNLESITDAADGIMVARGDLGTAIQYEKV
PYWQQQIADVCRRYGKPCMVSTHFLESMVLYPTPTRAEVADMTEATKQRV
DALVLTAETASGKFPFKALSTMNSVLLRIQQRIHELEQTADDPVLEIPPL
VKDTTWWTPGVGDVAENIANSAAVLANQQNAAAIMVFTQKGLMATLMSRY
RPRAPIYAFTATPVVRNKMNLLYGVRPFRIPFEDDPEETIQNAMNALKER
QVVQDGDLVVILADVLGGREKATEAELRSAFLEISKGNRFITASETRNAL
RLLGLKLSDKREAQLGMRDVDIAEVGRETRIKNEEPTESLSTEIAGRYDF
QRFHAFASQANEIVHTLQLRNIK*

spliced messenger RNA

>Gcaud3394.t1 ID=Gcaud3394.t1|Name=Gcaud3394.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1872bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:28162..30033- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACATTTTGGAATCCGTTCCGGTTCAGTTTCGCAGTTCCCTGCT
AAAGCTTCCTGAGGATGCAGAAGTGGCAAATGTCGGAGAACGTCACACAA
AAATCGTTGGCACGGTTGGGCCTTCTACGTGTGATCCGGATAACTTGCTG
CGTCTCATTGCCGGCGGCGTCAACCTTGTCCGCCTCAATCTTTGTCACGG
CGATTACGAATGGCATAGAAAGGTCATTGAAAACATTCGAGATATTAACC
TTAATACTGCCTTTGTCGCAGGCGTGATGATTGACCTAGGCTCTTTTGAC
ACGGTTCGCCTTGGTGAGTTTTCTCGAAACCCAGTTCTCGAGGTGGGTGA
CTCCTTCACGCTTACCGTTCGTCACGAAGCGGAATATCCGACTGCAGTTT
CAGAAGTTAGCTTAGATGGCTTCATTGATTTGCCCGAAAAAGGTGATATG
ATTCAGTGCCAGGCTGAAGGAGGGGGAGTCGTCGAACTTCTCGTAAAGGA
GATCGAGGGCCTGGACATTTTGTGCGAAGTTGTAAGTCCAGGAGAGCTGC
GGTCTCGGGGCACTATCAACATTCGCGGGAAGTCTATCAATGTAACGCCT
AGGGCCGAGAATGAGGATTTAAACACTTCAATTGCTCGAGCAGTATTGGG
ATGCCCACCAGATCAGCTCGAGTTTGCAATTAGTGAGCGTGTGGAGTACG
TTGCTTTGTCTTTTGTCGAGTCTGCTGACCAAGTTCTGGCTGTCCGAAAT
CTCCTGAGAAATAGACGTGCCAACATTGGCGTCATAGCGAAGATTGAATC
TCCTAATGCTCTGCGAAACTTAGAAAGCATTACGGACGCAGCCGATGGAA
TCATGGTTGCTCGAGGTGACCTCGGCACTGCGATTCAATACGAGAAGGTA
CCCTACTGGCAACAACAAATCGCTGATGTCTGTCGTCGTTACGGGAAGCC
ATGCATGGTGTCAACGCATTTTCTTGAGAGCATGGTGCTTTATCCGACTC
CTACACGAGCCGAAGTCGCTGACATGACAGAAGCCACAAAGCAAAGAGTT
GACGCGTTGGTCCTCACTGCGGAAACTGCAAGCGGAAAGTTTCCTTTCAA
AGCACTTTCAACAATGAATTCCGTTCTTCTTCGCATCCAGCAACGCATTC
ATGAGCTTGAGCAAACTGCGGATGATCCTGTTCTAGAGATTCCGCCCTTG
GTCAAAGATACCACATGGTGGACACCAGGTGTGGGTGATGTTGCAGAGAA
TATTGCAAACAGCGCAGCAGTCTTGGCTAATCAGCAGAACGCTGCGGCTA
TAATGGTTTTCACGCAGAAAGGATTGATGGCGACGCTCATGTCACGATAT
AGACCTCGTGCCCCTATTTATGCGTTTACGGCTACTCCAGTTGTTCGCAA
CAAGATGAATTTGCTTTATGGCGTGCGACCGTTCCGCATTCCTTTCGAAG
ATGATCCAGAAGAGACCATTCAGAATGCAATGAACGCTTTGAAAGAGCGA
CAGGTCGTCCAAGATGGGGACCTGGTTGTGATCTTGGCGGACGTGCTTGG
AGGTCGCGAAAAGGCCACAGAAGCGGAGCTACGTTCGGCATTCCTTGAGA
TTTCCAAAGGAAACCGGTTTATCACTGCATCTGAAACTCGAAACGCGCTA
CGACTGCTTGGCTTGAAGCTAAGTGATAAACGTGAGGCTCAACTGGGAAT
GCGTGACGTAGATATCGCAGAAGTCGGAAGAGAAACACGTATCAAGAACG
AAGAACCAACGGAATCTCTATCCACAGAGATTGCAGGACGTTACGATTTC
CAGAGATTCCATGCGTTTGCCTCTCAGGCCAATGAGATCGTGCACACTCT
GCAGCTTCGCAATATAAAGTGA

protein sequence of Gcaud3394.t1

>Gcaud3394.t1 ID=Gcaud3394.t1|Name=Gcaud3394.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=624bp
MANILESVPVQFRSSLLKLPEDAEVANVGERHTKIVGTVGPSTCDPDNLL
RLIAGGVNLVRLNLCHGDYEWHRKVIENIRDINLNTAFVAGVMIDLGSFD
TVRLGEFSRNPVLEVGDSFTLTVRHEAEYPTAVSEVSLDGFIDLPEKGDM
IQCQAEGGGVVELLVKEIEGLDILCEVVSPGELRSRGTINIRGKSINVTP
RAENEDLNTSIARAVLGCPPDQLEFAISERVEYVALSFVESADQVLAVRN
LLRNRRANIGVIAKIESPNALRNLESITDAADGIMVARGDLGTAIQYEKV
PYWQQQIADVCRRYGKPCMVSTHFLESMVLYPTPTRAEVADMTEATKQRV
DALVLTAETASGKFPFKALSTMNSVLLRIQQRIHELEQTADDPVLEIPPL
VKDTTWWTPGVGDVAENIANSAAVLANQQNAAAIMVFTQKGLMATLMSRY
RPRAPIYAFTATPVVRNKMNLLYGVRPFRIPFEDDPEETIQNAMNALKER
QVVQDGDLVVILADVLGGREKATEAELRSAFLEISKGNRFITASETRNAL
RLLGLKLSDKREAQLGMRDVDIAEVGRETRIKNEEPTESLSTEIAGRYDF
QRFHAFASQANEIVHTLQLRNIK*

mRNA from alignment at NODE_100_length_51433_cov_4.606891:28162..30033-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3394.t1 ID=Gcaud3394.t1|Name=Gcaud3394.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1872bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:28162..30033- (Gracilaria caudata M_176_S67 male)
ATGGCAAACATTTTGGAATCCGTTCCGGTTCAGTTTCGCAGTTCCCTGCT
AAAGCTTCCTGAGGATGCAGAAGTGGCAAATGTCGGAGAACGTCACACAA
AAATCGTTGGCACGGTTGGGCCTTCTACGTGTGATCCGGATAACTTGCTG
CGTCTCATTGCCGGCGGCGTCAACCTTGTCCGCCTCAATCTTTGTCACGG
CGATTACGAATGGCATAGAAAGGTCATTGAAAACATTCGAGATATTAACC
TTAATACTGCCTTTGTCGCAGGCGTGATGATTGACCTAGGCTCTTTTGAC
ACGGTTCGCCTTGGTGAGTTTTCTCGAAACCCAGTTCTCGAGGTGGGTGA
CTCCTTCACGCTTACCGTTCGTCACGAAGCGGAATATCCGACTGCAGTTT
CAGAAGTTAGCTTAGATGGCTTCATTGATTTGCCCGAAAAAGGTGATATG
ATTCAGTGCCAGGCTGAAGGAGGGGGAGTCGTCGAACTTCTCGTAAAGGA
GATCGAGGGCCTGGACATTTTGTGCGAAGTTGTAAGTCCAGGAGAGCTGC
GGTCTCGGGGCACTATCAACATTCGCGGGAAGTCTATCAATGTAACGCCT
AGGGCCGAGAATGAGGATTTAAACACTTCAATTGCTCGAGCAGTATTGGG
ATGCCCACCAGATCAGCTCGAGTTTGCAATTAGTGAGCGTGTGGAGTACG
TTGCTTTGTCTTTTGTCGAGTCTGCTGACCAAGTTCTGGCTGTCCGAAAT
CTCCTGAGAAATAGACGTGCCAACATTGGCGTCATAGCGAAGATTGAATC
TCCTAATGCTCTGCGAAACTTAGAAAGCATTACGGACGCAGCCGATGGAA
TCATGGTTGCTCGAGGTGACCTCGGCACTGCGATTCAATACGAGAAGGTA
CCCTACTGGCAACAACAAATCGCTGATGTCTGTCGTCGTTACGGGAAGCC
ATGCATGGTGTCAACGCATTTTCTTGAGAGCATGGTGCTTTATCCGACTC
CTACACGAGCCGAAGTCGCTGACATGACAGAAGCCACAAAGCAAAGAGTT
GACGCGTTGGTCCTCACTGCGGAAACTGCAAGCGGAAAGTTTCCTTTCAA
AGCACTTTCAACAATGAATTCCGTTCTTCTTCGCATCCAGCAACGCATTC
ATGAGCTTGAGCAAACTGCGGATGATCCTGTTCTAGAGATTCCGCCCTTG
GTCAAAGATACCACATGGTGGACACCAGGTGTGGGTGATGTTGCAGAGAA
TATTGCAAACAGCGCAGCAGTCTTGGCTAATCAGCAGAACGCTGCGGCTA
TAATGGTTTTCACGCAGAAAGGATTGATGGCGACGCTCATGTCACGATAT
AGACCTCGTGCCCCTATTTATGCGTTTACGGCTACTCCAGTTGTTCGCAA
CAAGATGAATTTGCTTTATGGCGTGCGACCGTTCCGCATTCCTTTCGAAG
ATGATCCAGAAGAGACCATTCAGAATGCAATGAACGCTTTGAAAGAGCGA
CAGGTCGTCCAAGATGGGGACCTGGTTGTGATCTTGGCGGACGTGCTTGG
AGGTCGCGAAAAGGCCACAGAAGCGGAGCTACGTTCGGCATTCCTTGAGA
TTTCCAAAGGAAACCGGTTTATCACTGCATCTGAAACTCGAAACGCGCTA
CGACTGCTTGGCTTGAAGCTAAGTGATAAACGTGAGGCTCAACTGGGAAT
GCGTGACGTAGATATCGCAGAAGTCGGAAGAGAAACACGTATCAAGAACG
AAGAACCAACGGAATCTCTATCCACAGAGATTGCAGGACGTTACGATTTC
CAGAGATTCCATGCGTTTGCCTCTCAGGCCAATGAGATCGTGCACACTCT
GCAGCTTCGCAATATAAAGTGA

Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:28162..30033-

>Gcaud3394.t1 ID=Gcaud3394.t1|Name=Gcaud3394.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1872bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:28162..30033- (Gracilaria caudata M_176_S67 male)
ATGGCAAACATTTTGGAATCCGTTCCGGTTCAGTTTCGCAGTTCCCTGCT
AAAGCTTCCTGAGGATGCAGAAGTGGCAAATGTCGGAGAACGTCACACAA
AAATCGTTGGCACGGTTGGGCCTTCTACGTGTGATCCGGATAACTTGCTG
CGTCTCATTGCCGGCGGCGTCAACCTTGTCCGCCTCAATCTTTGTCACGG
CGATTACGAATGGCATAGAAAGGTCATTGAAAACATTCGAGATATTAACC
TTAATACTGCCTTTGTCGCAGGCGTGATGATTGACCTAGGCTCTTTTGAC
ACGGTTCGCCTTGGTGAGTTTTCTCGAAACCCAGTTCTCGAGGTGGGTGA
CTCCTTCACGCTTACCGTTCGTCACGAAGCGGAATATCCGACTGCAGTTT
CAGAAGTTAGCTTAGATGGCTTCATTGATTTGCCCGAAAAAGGTGATATG
ATTCAGTGCCAGGCTGAAGGAGGGGGAGTCGTCGAACTTCTCGTAAAGGA
GATCGAGGGCCTGGACATTTTGTGCGAAGTTGTAAGTCCAGGAGAGCTGC
GGTCTCGGGGCACTATCAACATTCGCGGGAAGTCTATCAATGTAACGCCT
AGGGCCGAGAATGAGGATTTAAACACTTCAATTGCTCGAGCAGTATTGGG
ATGCCCACCAGATCAGCTCGAGTTTGCAATTAGTGAGCGTGTGGAGTACG
TTGCTTTGTCTTTTGTCGAGTCTGCTGACCAAGTTCTGGCTGTCCGAAAT
CTCCTGAGAAATAGACGTGCCAACATTGGCGTCATAGCGAAGATTGAATC
TCCTAATGCTCTGCGAAACTTAGAAAGCATTACGGACGCAGCCGATGGAA
TCATGGTTGCTCGAGGTGACCTCGGCACTGCGATTCAATACGAGAAGGTA
CCCTACTGGCAACAACAAATCGCTGATGTCTGTCGTCGTTACGGGAAGCC
ATGCATGGTGTCAACGCATTTTCTTGAGAGCATGGTGCTTTATCCGACTC
CTACACGAGCCGAAGTCGCTGACATGACAGAAGCCACAAAGCAAAGAGTT
GACGCGTTGGTCCTCACTGCGGAAACTGCAAGCGGAAAGTTTCCTTTCAA
AGCACTTTCAACAATGAATTCCGTTCTTCTTCGCATCCAGCAACGCATTC
ATGAGCTTGAGCAAACTGCGGATGATCCTGTTCTAGAGATTCCGCCCTTG
GTCAAAGATACCACATGGTGGACACCAGGTGTGGGTGATGTTGCAGAGAA
TATTGCAAACAGCGCAGCAGTCTTGGCTAATCAGCAGAACGCTGCGGCTA
TAATGGTTTTCACGCAGAAAGGATTGATGGCGACGCTCATGTCACGATAT
AGACCTCGTGCCCCTATTTATGCGTTTACGGCTACTCCAGTTGTTCGCAA
CAAGATGAATTTGCTTTATGGCGTGCGACCGTTCCGCATTCCTTTCGAAG
ATGATCCAGAAGAGACCATTCAGAATGCAATGAACGCTTTGAAAGAGCGA
CAGGTCGTCCAAGATGGGGACCTGGTTGTGATCTTGGCGGACGTGCTTGG
AGGTCGCGAAAAGGCCACAGAAGCGGAGCTACGTTCGGCATTCCTTGAGA
TTTCCAAAGGAAACCGGTTTATCACTGCATCTGAAACTCGAAACGCGCTA
CGACTGCTTGGCTTGAAGCTAAGTGATAAACGTGAGGCTCAACTGGGAAT
GCGTGACGTAGATATCGCAGAAGTCGGAAGAGAAACACGTATCAAGAACG
AAGAACCAACGGAATCTCTATCCACAGAGATTGCAGGACGTTACGATTTC
CAGAGATTCCATGCGTTTGCCTCTCAGGCCAATGAGATCGTGCACACTCT
GCAGCTTCGCAATATAAAGTGA