Gcaud3388.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3388.t1
Unique Name	Gcaud3388.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	387

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_100_length_51433_cov_4.606891	contig	NODE_100_length_51433_cov_4.606891:18952..20112 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3388	Gcaud3388	Gracilaria caudata M_176_S67 male	gene	NODE_100_length_51433_cov_4.606891 18952..20112 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3388.t1.start1	Gcaud3388.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_100_length_51433_cov_4.606891 18952..18954 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3388.t1.CDS1	Gcaud3388.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_100_length_51433_cov_4.606891 18952..20112 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3388.t1.exon1	Gcaud3388.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_100_length_51433_cov_4.606891 18952..20112 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3388.t1.stop1	Gcaud3388.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_100_length_51433_cov_4.606891 20110..20112 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3388.t1	Gcaud3388.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_100_length_51433_cov_4.606891 18952..20112 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_100_length_51433_cov_4.606891:18952..20112+
coding sequence from alignment at NODE_100_length_51433_cov_4.606891:18952..20112+

mRNA sequence

>Gcaud3388.t1 ID=Gcaud3388.t1|Name=Gcaud3388.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=387bp
MSGKTVLTTLDMRKTRLWRVLTLLFLWNSLSNRANGQICEAPLGADFDRE
PTFWCRLHANVSITQSCYTTVEEIIQLPWSHGRLVRYIAHQTNQRILNVS
AFQFQAGIEKAVNVTEVKLDSSKTNTAITLRVSGTKEPFLVSLLYEVENG
VELYHACDITKDEFQDEENKRYQLVKWSSGAKSAQYIRSLQVIFSLHNSA
DMTFADSPVKRPSEFEVESVRNTSIASKQIEVKHGGNATNSQPGAIIFYF
RGVTKRGTEECPNSRSCEREADMIRDKYKGDGLTKVIIGAGIGVGILAVL
VGIGMWIACCKSLTKRNTGNLDNLPISLRHFAYDTGDDKPSGQLRQWARG
KNVGKKEYLAVDLSPGNKQLVSGAEAEQENEVQRKV*

spliced messenger RNA

>Gcaud3388.t1 ID=Gcaud3388.t1|Name=Gcaud3388.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:18952..20112+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGGAAAGACTGTGTTGACAACATTAGATATGAGAAAAACACGCTT
ATGGAGAGTATTAACTCTGCTTTTTTTATGGAACTCACTCTCTAATCGAG
CAAATGGGCAGATATGTGAAGCTCCACTTGGTGCAGATTTTGACAGAGAA
CCTACGTTTTGGTGCCGTTTGCATGCTAATGTCAGCATAACCCAAAGCTG
TTATACAACTGTAGAGGAAATCATACAACTGCCATGGTCGCATGGTCGTT
TAGTGCGGTATATTGCTCATCAAACTAATCAACGCATATTGAACGTTAGT
GCTTTTCAGTTTCAAGCGGGTATTGAAAAAGCTGTGAATGTGACGGAAGT
GAAATTGGATTCTTCCAAGACTAACACCGCCATTACCCTCCGTGTTTCAG
GTACAAAAGAACCCTTTCTTGTCTCACTTCTATATGAGGTTGAGAATGGC
GTTGAATTATACCATGCCTGTGATATAACCAAAGATGAGTTTCAGGATGA
GGAGAACAAGCGATATCAATTAGTCAAGTGGAGCTCTGGTGCAAAATCAG
CTCAATACATACGAAGTCTTCAGGTAATATTTTCCTTGCACAACTCAGCA
GACATGACATTTGCTGATTCACCGGTGAAGAGACCTTCAGAATTTGAAGT
AGAAAGTGTGAGAAACACGTCCATTGCCTCGAAACAGATTGAGGTGAAGC
ATGGAGGCAACGCAACAAATTCGCAGCCAGGCGCAATTATATTCTATTTT
CGAGGCGTAACAAAGAGAGGAACTGAAGAATGTCCGAACAGTCGAAGCTG
CGAGAGAGAAGCAGATATGATTAGAGACAAATACAAAGGAGACGGGCTTA
CGAAGGTTATTattggagctggcattggtgttggaattctggcagtctta
gtgggcattggcatgtggattgCGTGTTGTAAGAGTTTAACAAAGAGGAA
CACTGGAAATCTGGATAATCTGCCCATCAGTCTGAGACATTTTGCATACG
ATACTGGGGACGATAAGCCTAGCGGACAATTGCGGCAATGGGCGCGTGGT
AAAAACGTGGGCAAGAAAGAGTATCTGGCGGTTGACCTCTCTCCCGGAAA
CAAGCAGCTTGTGTCAGGGGCAGAAGCTGAACAGGAAAACGAGGTTCAGC
GCAAAGTATGA

protein sequence of Gcaud3388.t1

>Gcaud3388.t1 ID=Gcaud3388.t1|Name=Gcaud3388.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=387bp
MSGKTVLTTLDMRKTRLWRVLTLLFLWNSLSNRANGQICEAPLGADFDRE
PTFWCRLHANVSITQSCYTTVEEIIQLPWSHGRLVRYIAHQTNQRILNVS
AFQFQAGIEKAVNVTEVKLDSSKTNTAITLRVSGTKEPFLVSLLYEVENG
VELYHACDITKDEFQDEENKRYQLVKWSSGAKSAQYIRSLQVIFSLHNSA
DMTFADSPVKRPSEFEVESVRNTSIASKQIEVKHGGNATNSQPGAIIFYF
RGVTKRGTEECPNSRSCEREADMIRDKYKGDGLTKVIIGAGIGVGILAVL
VGIGMWIACCKSLTKRNTGNLDNLPISLRHFAYDTGDDKPSGQLRQWARG
KNVGKKEYLAVDLSPGNKQLVSGAEAEQENEVQRKV*

mRNA from alignment at NODE_100_length_51433_cov_4.606891:18952..20112+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3388.t1 ID=Gcaud3388.t1|Name=Gcaud3388.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:18952..20112+ (Gracilaria caudata M_176_S67 male)
ATGTCGGGAAAGACTGTGTTGACAACATTAGATATGAGAAAAACACGCTT
ATGGAGAGTATTAACTCTGCTTTTTTTATGGAACTCACTCTCTAATCGAG
CAAATGGGCAGATATGTGAAGCTCCACTTGGTGCAGATTTTGACAGAGAA
CCTACGTTTTGGTGCCGTTTGCATGCTAATGTCAGCATAACCCAAAGCTG
TTATACAACTGTAGAGGAAATCATACAACTGCCATGGTCGCATGGTCGTT
TAGTGCGGTATATTGCTCATCAAACTAATCAACGCATATTGAACGTTAGT
GCTTTTCAGTTTCAAGCGGGTATTGAAAAAGCTGTGAATGTGACGGAAGT
GAAATTGGATTCTTCCAAGACTAACACCGCCATTACCCTCCGTGTTTCAG
GTACAAAAGAACCCTTTCTTGTCTCACTTCTATATGAGGTTGAGAATGGC
GTTGAATTATACCATGCCTGTGATATAACCAAAGATGAGTTTCAGGATGA
GGAGAACAAGCGATATCAATTAGTCAAGTGGAGCTCTGGTGCAAAATCAG
CTCAATACATACGAAGTCTTCAGGTAATATTTTCCTTGCACAACTCAGCA
GACATGACATTTGCTGATTCACCGGTGAAGAGACCTTCAGAATTTGAAGT
AGAAAGTGTGAGAAACACGTCCATTGCCTCGAAACAGATTGAGGTGAAGC
ATGGAGGCAACGCAACAAATTCGCAGCCAGGCGCAATTATATTCTATTTT
CGAGGCGTAACAAAGAGAGGAACTGAAGAATGTCCGAACAGTCGAAGCTG
CGAGAGAGAAGCAGATATGATTAGAGACAAATACAAAGGAGACGGGCTTA
CGAAGGTTATTattggagctggcattggtgttggaattctggcagtctta
gtgggcattggcatgtggattgCGTGTTGTAAGAGTTTAACAAAGAGGAA
CACTGGAAATCTGGATAATCTGCCCATCAGTCTGAGACATTTTGCATACG
ATACTGGGGACGATAAGCCTAGCGGACAATTGCGGCAATGGGCGCGTGGT
AAAAACGTGGGCAAGAAAGAGTATCTGGCGGTTGACCTCTCTCCCGGAAA
CAAGCAGCTTGTGTCAGGGGCAGAAGCTGAACAGGAAAACGAGGTTCAGC
GCAAAGTATGA

Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:18952..20112+

>Gcaud3388.t1 ID=Gcaud3388.t1|Name=Gcaud3388.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1161bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:18952..20112+ (Gracilaria caudata M_176_S67 male)
ATGTCGGGAAAGACTGTGTTGACAACATTAGATATGAGAAAAACACGCTT
ATGGAGAGTATTAACTCTGCTTTTTTTATGGAACTCACTCTCTAATCGAG
CAAATGGGCAGATATGTGAAGCTCCACTTGGTGCAGATTTTGACAGAGAA
CCTACGTTTTGGTGCCGTTTGCATGCTAATGTCAGCATAACCCAAAGCTG
TTATACAACTGTAGAGGAAATCATACAACTGCCATGGTCGCATGGTCGTT
TAGTGCGGTATATTGCTCATCAAACTAATCAACGCATATTGAACGTTAGT
GCTTTTCAGTTTCAAGCGGGTATTGAAAAAGCTGTGAATGTGACGGAAGT
GAAATTGGATTCTTCCAAGACTAACACCGCCATTACCCTCCGTGTTTCAG
GTACAAAAGAACCCTTTCTTGTCTCACTTCTATATGAGGTTGAGAATGGC
GTTGAATTATACCATGCCTGTGATATAACCAAAGATGAGTTTCAGGATGA
GGAGAACAAGCGATATCAATTAGTCAAGTGGAGCTCTGGTGCAAAATCAG
CTCAATACATACGAAGTCTTCAGGTAATATTTTCCTTGCACAACTCAGCA
GACATGACATTTGCTGATTCACCGGTGAAGAGACCTTCAGAATTTGAAGT
AGAAAGTGTGAGAAACACGTCCATTGCCTCGAAACAGATTGAGGTGAAGC
ATGGAGGCAACGCAACAAATTCGCAGCCAGGCGCAATTATATTCTATTTT
CGAGGCGTAACAAAGAGAGGAACTGAAGAATGTCCGAACAGTCGAAGCTG
CGAGAGAGAAGCAGATATGATTAGAGACAAATACAAAGGAGACGGGCTTA
CGAAGGTTATTattggagctggcattggtgttggaattctggcagtctta
gtgggcattggcatgtggattgCGTGTTGTAAGAGTTTAACAAAGAGGAA
CACTGGAAATCTGGATAATCTGCCCATCAGTCTGAGACATTTTGCATACG
ATACTGGGGACGATAAGCCTAGCGGACAATTGCGGCAATGGGCGCGTGGT
AAAAACGTGGGCAAGAAAGAGTATCTGGCGGTTGACCTCTCTCCCGGAAA
CAAGCAGCTTGTGTCAGGGGCAGAAGCTGAACAGGAAAACGAGGTTCAGC
GCAAAGTATGA