Gcaud3385.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3385.t2
Unique Name	Gcaud3385.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	279

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_100_length_51433_cov_4.606891	contig	NODE_100_length_51433_cov_4.606891:14274..15110 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	324057.Pjdr2_4462
PFAMs	Sulfotransfer_2
Max annot lvl	91061\|Bacilli
Evalue	5.1e-09
EggNOG OGs	2AWP9@1\|root,31NK6@2\|Bacteria,1VIFJ@1239\|Firmicutes,4HPA6@91061\|Bacilli,2719I@186822\|Paenibacillaceae
Description	Sulfotransferase family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3385	Gcaud3385	Gracilaria caudata M_176_S67 male	gene	NODE_100_length_51433_cov_4.606891 14274..15338 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3385.t2.stop1	Gcaud3385.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_100_length_51433_cov_4.606891 14274..14276 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3385.t2.CDS1	Gcaud3385.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_100_length_51433_cov_4.606891 14274..15110 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3385.t2.exon1	Gcaud3385.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_100_length_51433_cov_4.606891 14274..15110 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3385.t2.start1	Gcaud3385.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_100_length_51433_cov_4.606891 15108..15110 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3385.t2	Gcaud3385.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_100_length_51433_cov_4.606891 14274..15110 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_100_length_51433_cov_4.606891:14274..15110-
coding sequence from alignment at NODE_100_length_51433_cov_4.606891:14274..15110-

mRNA sequence

>Gcaud3385.t2 ID=Gcaud3385.t2|Name=Gcaud3385.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=279bp
LYIFLHLHKTGGNSLKDALYAFAKKNKLNLFHTCHLAQADSRFEAWYFHR
DKNDRGTDCNLEDLIHLTRAQRADIDMIMGHQFFGVHELFPNREPYYFTF
VRHPLHRKLSHYHHFESRNDTRKEDDLYQYLLHKNRNYMVKRLSTDGVVN
EVWTDIRSKVMDRDGHSRYAALEEAKRHLVDYFFFVGLYERYEQSACILS
TLLNSACGRRGILGKRVKTAERNMTRIRRNVRGRQMLEQIPENIRNNTLH
MEDVDRKLYDFAKLLYFQSLHEVPECRR*

spliced messenger RNA

>Gcaud3385.t2 ID=Gcaud3385.t2|Name=Gcaud3385.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=837bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:14274..15110- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTATATTTTCCTCCATCTTCACAAAACTGGAGGCAACAGTCTGAAGGA
TGCCCTATATGCGTTTGCGAAGAAGAACAAGCTGAACCTCTTCCACACCT
GTCATCTTGCACAAGCAGACTCCCGTTTTGAAGCATGGTACTTTCACCGT
GACAAAAATGACCGAGGCACAGACTGCAACTTAGAGGACTTGATACATCT
TACTAGGGCTCAGCGGGCAGATATAGACATGATAATGGGGCATCAGTTCT
TTGGTGTTCATGAACTGTTTCCGAATCGTGAGCCTTACTATTTCACATTT
GTACGACATCCCCTGCACAGAAAGTTATCGCATTACCATCACTTCGAATC
ACGAAATGACACGCGGAAGGAAGATGACCTTTATCAATATCTCTTGCATA
AGAACCGTAATTATATGGTCAAGCGCCTCTCTACTGATGGTGTCGTCAAT
GAGGTTTGGACTGATATTCGTTCTAAGGTAATGGATAGAGACGGCCATTC
AAGGTACGCGGCCTTGGAGGAAGCCAAACGTCATTTAGTGGATTACTTTT
TCTTCGTAGGTTTATATGAACGGTACGAACAATCCGCGTGTATTCTTTCC
ACATTACTGAACTCGGCTTGTGGGAGACGAGGAATACTAGGCAAACGGGT
AAAGACAGCCGAAAGAAACATGACCAGAATTCGAAGAAACGTTCGTGGCC
GACAGATGCTAGAACAAATTCCAGAAAACATTCGAAACAATACTCTACAC
ATGGAAGACGTAGACCGTAAGCTTTACGACTTCGCAAAATTGTTGTACTT
CCAAAGTTTACATGAAGTACCCGAATGTCGACGTTAA

protein sequence of Gcaud3385.t2

>Gcaud3385.t2 ID=Gcaud3385.t2|Name=Gcaud3385.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=279bp
LYIFLHLHKTGGNSLKDALYAFAKKNKLNLFHTCHLAQADSRFEAWYFHR
DKNDRGTDCNLEDLIHLTRAQRADIDMIMGHQFFGVHELFPNREPYYFTF
VRHPLHRKLSHYHHFESRNDTRKEDDLYQYLLHKNRNYMVKRLSTDGVVN
EVWTDIRSKVMDRDGHSRYAALEEAKRHLVDYFFFVGLYERYEQSACILS
TLLNSACGRRGILGKRVKTAERNMTRIRRNVRGRQMLEQIPENIRNNTLH
MEDVDRKLYDFAKLLYFQSLHEVPECRR*

mRNA from alignment at NODE_100_length_51433_cov_4.606891:14274..15110-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3385.t2 ID=Gcaud3385.t2|Name=Gcaud3385.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=837bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:14274..15110- (Gracilaria caudata M_176_S67 male)
CTGTATATTTTCCTCCATCTTCACAAAACTGGAGGCAACAGTCTGAAGGA
TGCCCTATATGCGTTTGCGAAGAAGAACAAGCTGAACCTCTTCCACACCT
GTCATCTTGCACAAGCAGACTCCCGTTTTGAAGCATGGTACTTTCACCGT
GACAAAAATGACCGAGGCACAGACTGCAACTTAGAGGACTTGATACATCT
TACTAGGGCTCAGCGGGCAGATATAGACATGATAATGGGGCATCAGTTCT
TTGGTGTTCATGAACTGTTTCCGAATCGTGAGCCTTACTATTTCACATTT
GTACGACATCCCCTGCACAGAAAGTTATCGCATTACCATCACTTCGAATC
ACGAAATGACACGCGGAAGGAAGATGACCTTTATCAATATCTCTTGCATA
AGAACCGTAATTATATGGTCAAGCGCCTCTCTACTGATGGTGTCGTCAAT
GAGGTTTGGACTGATATTCGTTCTAAGGTAATGGATAGAGACGGCCATTC
AAGGTACGCGGCCTTGGAGGAAGCCAAACGTCATTTAGTGGATTACTTTT
TCTTCGTAGGTTTATATGAACGGTACGAACAATCCGCGTGTATTCTTTCC
ACATTACTGAACTCGGCTTGTGGGAGACGAGGAATACTAGGCAAACGGGT
AAAGACAGCCGAAAGAAACATGACCAGAATTCGAAGAAACGTTCGTGGCC
GACAGATGCTAGAACAAATTCCAGAAAACATTCGAAACAATACTCTACAC
ATGGAAGACGTAGACCGTAAGCTTTACGACTTCGCAAAATTGTTGTACTT
CCAAAGTTTACATGAAGTACCCGAATGTCGACGTTAA

Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:14274..15110-

>Gcaud3385.t2 ID=Gcaud3385.t2|Name=Gcaud3385.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=837bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:14274..15110- (Gracilaria caudata M_176_S67 male)
CTGTATATTTTCCTCCATCTTCACAAAACTGGAGGCAACAGTCTGAAGGA
TGCCCTATATGCGTTTGCGAAGAAGAACAAGCTGAACCTCTTCCACACCT
GTCATCTTGCACAAGCAGACTCCCGTTTTGAAGCATGGTACTTTCACCGT
GACAAAAATGACCGAGGCACAGACTGCAACTTAGAGGACTTGATACATCT
TACTAGGGCTCAGCGGGCAGATATAGACATGATAATGGGGCATCAGTTCT
TTGGTGTTCATGAACTGTTTCCGAATCGTGAGCCTTACTATTTCACATTT
GTACGACATCCCCTGCACAGAAAGTTATCGCATTACCATCACTTCGAATC
ACGAAATGACACGCGGAAGGAAGATGACCTTTATCAATATCTCTTGCATA
AGAACCGTAATTATATGGTCAAGCGCCTCTCTACTGATGGTGTCGTCAAT
GAGGTTTGGACTGATATTCGTTCTAAGGTAATGGATAGAGACGGCCATTC
AAGGTACGCGGCCTTGGAGGAAGCCAAACGTCATTTAGTGGATTACTTTT
TCTTCGTAGGTTTATATGAACGGTACGAACAATCCGCGTGTATTCTTTCC
ACATTACTGAACTCGGCTTGTGGGAGACGAGGAATACTAGGCAAACGGGT
AAAGACAGCCGAAAGAAACATGACCAGAATTCGAAGAAACGTTCGTGGCC
GACAGATGCTAGAACAAATTCCAGAAAACATTCGAAACAATACTCTACAC
ATGGAAGACGTAGACCGTAAGCTTTACGACTTCGCAAAATTGTTGTACTT
CCAAAGTTTACATGAAGTACCCGAATGTCGACGTTAA