Gcaud3378.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3378.t1
Unique Name	Gcaud3378.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	379

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1545_length_9840_cov_4.324751	contig	NODE_1545_length_9840_cov_4.324751:4402..5538 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_12433T0
Max annot lvl	2759\|Eukaryota
Evalue	2.59e-07
EggNOG OGs	2E93I@1\|root,2SFHA@2759\|Eukaryota,3AV0X@33154\|Opisthokonta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3378	Gcaud3378	Gracilaria caudata M_176_S67 male	gene	NODE_1545_length_9840_cov_4.324751 4402..5538 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3378.t1.start1	Gcaud3378.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1545_length_9840_cov_4.324751 4402..4404 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3378.t1.CDS1	Gcaud3378.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1545_length_9840_cov_4.324751 4402..5538 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3378.t1.exon1	Gcaud3378.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1545_length_9840_cov_4.324751 4402..5538 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3378.t1.stop1	Gcaud3378.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1545_length_9840_cov_4.324751 5536..5538 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3378.t1	Gcaud3378.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1545_length_9840_cov_4.324751 4402..5538 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1545_length_9840_cov_4.324751:4402..5538+
coding sequence from alignment at NODE_1545_length_9840_cov_4.324751:4402..5538+

mRNA sequence

>Gcaud3378.t1 ID=Gcaud3378.t1|Name=Gcaud3378.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=379bp
MRPRTNAKESYLPKTSFTSFRKAFRSATLLWAFLLVHSLFAYDRADYEQE
LRPTNGLRFEHATIPVGSTSSRNETLALQRLLIDDYLEFHKRERRKAEIS
SSKYAVTRTLVFKGKLWAGLGDRLRGVVQAYLLAVATNRVLLIDWEKPFP
LHHVLDSDRCKSNFTYDEYVFVHSRRKDNGRRDSVYIREASFSDLKVIAG
NISTVFMVVNRFPEWKHFLDLWRTHPKLAVSPQLRALRATTQIVRPEQIY
STIMGAIFRTSERLRQSIGQVRRGQNACFPCALCIEDRRGRPRMMRYVSI
HARLGSAIERDSPQRFNFSAHGLDMRAVAKCMANHAITAAKRAGNDVKSF
FIATDTEEMRYFLKDELRLCHGCRDLMT*

spliced messenger RNA

>Gcaud3378.t1 ID=Gcaud3378.t1|Name=Gcaud3378.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at NODE_1545_length_9840_cov_4.324751:4402..5538+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCTCGCACAAACGCAAAGGAGTCATATCTCCCGAAAACGAGTTT
TACAAGCTTTAGAAAGGCATTCAGAAGCGCAACGTTGCTCTGGGCGTTTC
TGCTGGTTCATTCTCTTTTCGCCTACGATCGTGCCGATTACGAGCAGGAA
CTGAGACCAACAAATGGGTTGCGTTTCGAACACGCGACCATTCCTGTGGG
GTCAACATCGTCGCGGAATGAAACGCTTGCACTGCAACGGCTGCTCATCG
ACGACTACTTAGAATTCCACAAAAGAGAGAGACGGAAGGCAGAAATAAGC
AGCAGCAAATACGCAGTAACTCGCACTTTGGTGTTCAAGGGTAAGCTATG
GGCTGGCCTCGGCGACCGTCTTCGAGGGGTGGTTCAAGCTTATCTTCTCG
CCGTCGCGACGAACAGGGTCTTGCTGATAGACTGGGAGAAGCCGTTTCCC
TTACATCATGTGTTAGATTCTGATCGATGCAAAAGCAATTTCACCTATGA
CGAATATGTTTTCGTGCATTCGCGACGGAAGGATAATGGAAGGCGAGACA
GCGTATACATTCGAGAGGCCAGTTTTTCCGACTTGAAGGTGATTGCAGGC
AACATCAGTACGGTGTTCATGGTGGTAAACCGATTTCCAGAGTGGAAGCA
TTTCTTGGACTTGTGGCGAACGCATCCCAAGTTGGCTGTATCTCCTCAGC
TCCGGGCGTTACGGGCAACGACACAAATCGTACGTCCCGAACAGATATAC
TCGACAATTATGGGGGCTATATTTCGCACGTCCGAGCGACTGAGACAGAG
CATTGGTCAGGTGCGGCGGGGGCAAAATGCGTGCTTTCCTTGTGCTCTCT
GTATCGAAGATAGGCGAGGTAGACCGCGTATGATGCGTTACGTTTCGATC
CACGCAAGACTTGGAAGCGCAATTGAGAGGGACTCCCCGCAGCGTTTCAA
CTTCAGTGCGCACGGCTTGGACATGAGGGCTGTGGCGAAATGCATGGCCA
ACCATGCTATAACGGCTGCAAAGAGAGCTGGAAATGACGTGAAAAGCTTT
TTCATTGCCACCGATACAGAGGAGATGCGCTACTTCCTAAAGGATGAACT
GCGTCTCTGTCATGGATGCAGGGACCTAATGACATAA

protein sequence of Gcaud3378.t1

>Gcaud3378.t1 ID=Gcaud3378.t1|Name=Gcaud3378.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=379bp
MRPRTNAKESYLPKTSFTSFRKAFRSATLLWAFLLVHSLFAYDRADYEQE
LRPTNGLRFEHATIPVGSTSSRNETLALQRLLIDDYLEFHKRERRKAEIS
SSKYAVTRTLVFKGKLWAGLGDRLRGVVQAYLLAVATNRVLLIDWEKPFP
LHHVLDSDRCKSNFTYDEYVFVHSRRKDNGRRDSVYIREASFSDLKVIAG
NISTVFMVVNRFPEWKHFLDLWRTHPKLAVSPQLRALRATTQIVRPEQIY
STIMGAIFRTSERLRQSIGQVRRGQNACFPCALCIEDRRGRPRMMRYVSI
HARLGSAIERDSPQRFNFSAHGLDMRAVAKCMANHAITAAKRAGNDVKSF
FIATDTEEMRYFLKDELRLCHGCRDLMT*

mRNA from alignment at NODE_1545_length_9840_cov_4.324751:4402..5538+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3378.t1 ID=Gcaud3378.t1|Name=Gcaud3378.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at NODE_1545_length_9840_cov_4.324751:4402..5538+ (Gracilaria caudata M_176_S67 male)
ATGCGCCCTCGCACAAACGCAAAGGAGTCATATCTCCCGAAAACGAGTTT
TACAAGCTTTAGAAAGGCATTCAGAAGCGCAACGTTGCTCTGGGCGTTTC
TGCTGGTTCATTCTCTTTTCGCCTACGATCGTGCCGATTACGAGCAGGAA
CTGAGACCAACAAATGGGTTGCGTTTCGAACACGCGACCATTCCTGTGGG
GTCAACATCGTCGCGGAATGAAACGCTTGCACTGCAACGGCTGCTCATCG
ACGACTACTTAGAATTCCACAAAAGAGAGAGACGGAAGGCAGAAATAAGC
AGCAGCAAATACGCAGTAACTCGCACTTTGGTGTTCAAGGGTAAGCTATG
GGCTGGCCTCGGCGACCGTCTTCGAGGGGTGGTTCAAGCTTATCTTCTCG
CCGTCGCGACGAACAGGGTCTTGCTGATAGACTGGGAGAAGCCGTTTCCC
TTACATCATGTGTTAGATTCTGATCGATGCAAAAGCAATTTCACCTATGA
CGAATATGTTTTCGTGCATTCGCGACGGAAGGATAATGGAAGGCGAGACA
GCGTATACATTCGAGAGGCCAGTTTTTCCGACTTGAAGGTGATTGCAGGC
AACATCAGTACGGTGTTCATGGTGGTAAACCGATTTCCAGAGTGGAAGCA
TTTCTTGGACTTGTGGCGAACGCATCCCAAGTTGGCTGTATCTCCTCAGC
TCCGGGCGTTACGGGCAACGACACAAATCGTACGTCCCGAACAGATATAC
TCGACAATTATGGGGGCTATATTTCGCACGTCCGAGCGACTGAGACAGAG
CATTGGTCAGGTGCGGCGGGGGCAAAATGCGTGCTTTCCTTGTGCTCTCT
GTATCGAAGATAGGCGAGGTAGACCGCGTATGATGCGTTACGTTTCGATC
CACGCAAGACTTGGAAGCGCAATTGAGAGGGACTCCCCGCAGCGTTTCAA
CTTCAGTGCGCACGGCTTGGACATGAGGGCTGTGGCGAAATGCATGGCCA
ACCATGCTATAACGGCTGCAAAGAGAGCTGGAAATGACGTGAAAAGCTTT
TTCATTGCCACCGATACAGAGGAGATGCGCTACTTCCTAAAGGATGAACT
GCGTCTCTGTCATGGATGCAGGGACCTAATGACATAA

Coding sequence (CDS) from alignment at NODE_1545_length_9840_cov_4.324751:4402..5538+

>Gcaud3378.t1 ID=Gcaud3378.t1|Name=Gcaud3378.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1137bp|location=Sequence derived from alignment at NODE_1545_length_9840_cov_4.324751:4402..5538+ (Gracilaria caudata M_176_S67 male)
ATGCGCCCTCGCACAAACGCAAAGGAGTCATATCTCCCGAAAACGAGTTT
TACAAGCTTTAGAAAGGCATTCAGAAGCGCAACGTTGCTCTGGGCGTTTC
TGCTGGTTCATTCTCTTTTCGCCTACGATCGTGCCGATTACGAGCAGGAA
CTGAGACCAACAAATGGGTTGCGTTTCGAACACGCGACCATTCCTGTGGG
GTCAACATCGTCGCGGAATGAAACGCTTGCACTGCAACGGCTGCTCATCG
ACGACTACTTAGAATTCCACAAAAGAGAGAGACGGAAGGCAGAAATAAGC
AGCAGCAAATACGCAGTAACTCGCACTTTGGTGTTCAAGGGTAAGCTATG
GGCTGGCCTCGGCGACCGTCTTCGAGGGGTGGTTCAAGCTTATCTTCTCG
CCGTCGCGACGAACAGGGTCTTGCTGATAGACTGGGAGAAGCCGTTTCCC
TTACATCATGTGTTAGATTCTGATCGATGCAAAAGCAATTTCACCTATGA
CGAATATGTTTTCGTGCATTCGCGACGGAAGGATAATGGAAGGCGAGACA
GCGTATACATTCGAGAGGCCAGTTTTTCCGACTTGAAGGTGATTGCAGGC
AACATCAGTACGGTGTTCATGGTGGTAAACCGATTTCCAGAGTGGAAGCA
TTTCTTGGACTTGTGGCGAACGCATCCCAAGTTGGCTGTATCTCCTCAGC
TCCGGGCGTTACGGGCAACGACACAAATCGTACGTCCCGAACAGATATAC
TCGACAATTATGGGGGCTATATTTCGCACGTCCGAGCGACTGAGACAGAG
CATTGGTCAGGTGCGGCGGGGGCAAAATGCGTGCTTTCCTTGTGCTCTCT
GTATCGAAGATAGGCGAGGTAGACCGCGTATGATGCGTTACGTTTCGATC
CACGCAAGACTTGGAAGCGCAATTGAGAGGGACTCCCCGCAGCGTTTCAA
CTTCAGTGCGCACGGCTTGGACATGAGGGCTGTGGCGAAATGCATGGCCA
ACCATGCTATAACGGCTGCAAAGAGAGCTGGAAATGACGTGAAAAGCTTT
TTCATTGCCACCGATACAGAGGAGATGCGCTACTTCCTAAAGGATGAACT
GCGTCTCTGTCATGGATGCAGGGACCTAATGACATAA