Gcaud3375.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3375.t1
Unique NameGcaud3375.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length557
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1125_length_13517_cov_4.326531contigNODE_1125_length_13517_cov_4.326531:6204..8051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9606.ENSP00000359181
Preferred namePOLL
PFAMsBRCT_2,DNA_pol_B_palm,DNA_pol_B_thumb,DNA_pol_lambd_f,HHH_8
Max annot lvl33208|Metazoa
KEGG koko:K03512
KEGG Pathwayko03410,ko03450,map03410,map03450
KEGG ModuleM00296
GOsGO:0000724,GO:0000725,GO:0000726,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006302,GO:0006303,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016445,GO:0016446,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048731,GO:0048856,GO:0050896,GO:0051575,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Evalue7.43e-52
EggNOG OGsCOG1796@1|root,KOG2534@2759|Eukaryota,39ENV@33154|Opisthokonta,3BCKK@33208|Metazoa,3CWDE@33213|Bilateria,47ZXN@7711|Chordata,48ZBV@7742|Vertebrata,3J3FK@40674|Mammalia,35CI2@314146|Euarchontoglires,4MHIP@9443|Primates,4MS21@9604|Hominidae
EC2.7.7.7
DescriptionDNA polymerase X family
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3375Gcaud3375Gracilaria caudata M_176_S67 malegeneNODE_1125_length_13517_cov_4.326531 6204..8051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3375.t1Gcaud3375.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1125_length_13517_cov_4.326531 6204..8051 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3375.t1.start1Gcaud3375.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1125_length_13517_cov_4.326531 6204..6206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3375.t1.CDS1Gcaud3375.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1125_length_13517_cov_4.326531 6204..7690 +
Gcaud3375.t1.CDS2Gcaud3375.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1125_length_13517_cov_4.326531 7788..7881 +
Gcaud3375.t1.CDS3Gcaud3375.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1125_length_13517_cov_4.326531 7962..8051 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3375.t1.exon1Gcaud3375.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1125_length_13517_cov_4.326531 6204..7690 +
Gcaud3375.t1.exon2Gcaud3375.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1125_length_13517_cov_4.326531 7788..7881 +
Gcaud3375.t1.exon3Gcaud3375.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1125_length_13517_cov_4.326531 7962..8051 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3375.t1.intron1Gcaud3375.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1125_length_13517_cov_4.326531 7691..7787 +
Gcaud3375.t1.intron2Gcaud3375.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1125_length_13517_cov_4.326531 7882..7961 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3375.t1.stop1Gcaud3375.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1125_length_13517_cov_4.326531 8049..8051 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3375.t1 ID=Gcaud3375.t1|Name=Gcaud3375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=557bp
MTPAPSPTPTESSIFADHYIFLVPSLLFTQRAAQRFLERLRAHGGDGQVL
QPAEKGFRSVQALSQCDSRSAFNQFVVADAPILSKYSHLCAIPVRPTRWL
SDSLRDLRIKSPQFYPGATPSAQTRPSIRSSPSLTSKRNFSDTQLTGEEI
SLSYQSQPEKRRKTANDSANSPSEKGSQPPVVRNLLPLFEESECSPSNRS
SLLAERPAIRSGVSSRWACEIRPMLAASDFPMNVTICELLGVVQEAYSLK
KDHFRSLGYQRAIAKIRSLSYEILTIDDVHSLGDEKAIGARLQKKIIEII
TTRRLLQAEAVLSNPQNIAVKTLCGVWGIGPVKALGLVARGITSIQQLRE
ALTEEKNLLDVNQKIGLKRYEDLLHRIPRKHVAELELYVRRIAKRIDTSL
DITVAGSYLRGKSSCGDVDIMVVGSSEILRRAFPQVVKRMKQEGVLTDDL
IYGPGKYFGIFKFPGRRHGRIDLFSVPHEQYPYALLTYTGSAVFNRSMRA
KARTYGYSLSHKGMQRVCRNRHSQTKIGAPVQVKNEKDIFRILDIPYVPP
SARSIS*
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spliced messenger RNA

>Gcaud3375.t1 ID=Gcaud3375.t1|Name=Gcaud3375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at NODE_1125_length_13517_cov_4.326531:6204..8051+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCCGCGCCCTCACCCACCCCCACCGAATCCTCTATTTTCGCAGA
CCATTATATCTTTCTCGTACCCAGTTTGCTCTTCACCCAGAGAGCCGCTC
AACGGTTTCTCGAGCGGCTTCGCGCGCACGGTGGAGATGGTCAAGTTCTG
CAACCAGCAGAAAAAGGCTTTCGTTCAGTTCAAGCTCTCTCACAGTGTGA
TTCAAGATCTGCATTTAATCAATTTGTCGTTGCTGATGCCCCCATTCTTT
CCAAGTACTCGCACTTATGCGCCATCCCGGTGAGACCTACTCGCTGGCTC
AGTGACAGTCTTCGTGATCTACGTATAAAGTCACCTCAATTTTACCCTGG
CGCTACCCCCTCAGCTCAGACTCGTCCTTCAATTCGGTCTTCACCAAGTC
TGACCTCAAAACGTAATTTCAGCGATACACAGTTGACTGGGGAGGAAATA
AGCTTGTCCTACCAGTCTCAGCCGGAGAAACGCAGAAAAACTGCCAATGA
TTCAGCGAACTCGCCTTCTGAAAAAGGGTCGCAACCTCCTGTTGTCAGGA
ATCTTCTGCCGCTATTCGAGGAAAGTGAATGCAGTCCTTCAAACAGGTCC
TCCCTTCTTGCTGAAAGACCCGCAATTCGTTCTGGCGTTTCCAGTAGATG
GGCATGTGAGATCCGGCCCATGCTTGCTGCATCTGATTTCCCTATGAACG
TTACGATTTGCGAGCTGCTCGGCGTTGTACAGGAAGCCTACTCGCTGAAG
AAGGATCACTTCCGGTCCTTGGGTTACCAGAGAGCTATTGCCAAGATTCG
TTCGCTTTCATACGAAATACTAACCATCGATGATGTCCATTCTCTTGGTG
ACGAGAAGGCGATCGGTGCAAGATTACAGAAAAAGATTATCGAGATCATC
ACCACCAGAAGGCTGCTTCAAGCTGAGGCAGTGTTGAGCAATCCTCAGAA
TATAGCTGTCAAAACTCTGTGCGGCGTGTGGGGGATTGGTCCAGTGAAGG
CGCTGGGCCTAGTTGCACGAGGAATAACTTCAATCCAACAGCTTCGTGAG
GCTTTGACCGAGGAGAAGAACTTGTTAGACGTGAATCAGAAGATTGGTCT
GAAACGCTATGAAGATCTTCTACACCGGATACCGAGAAAGCATGTAGCTG
AACTGGAACTCTATGTCCGAAGAATCGCAAAGCGAATAGATACATCGCTG
GATATCACAGTCGCAGGAAGTTATCTCCGGGGAAAGTCATCCTGCGGAGA
TGTCGATATCATGGTTGTTGGCTCCTCCGAAATACTAAGACGAGCTTTTC
CACAGGTCGTCAAACGTATGAAACAGGAGGGGGTTCTAACTGATGATCTC
ATTTACGGACCAGGAAAATATTTTGGTATCTTCAAGTTTCCGGGTCGTCG
TCACGGACGTATTGATTTGTTTTCTGTGCCTCACGAACAATACCCTTATG
CGCTTCTGACCTACACAGGTAGCGCAGTGTTTAACCGGTCAATGAGAGCC
AAAGCCCGAACTTATGGTTACAGTTTGAGCCATAAAGGAATGCAAAGGGT
TTGCAGAAACAGGCATTCTCAAACCAAGATAGGAGCTCCTGTTCAGGTGA
AGAATGAGAAGGACATTTTCAGAATACTAGACATTCCTTATGTTCCCCCT
TCGGCCCGGAGCATCTCATAA
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protein sequence of Gcaud3375.t1

>Gcaud3375.t1 ID=Gcaud3375.t1|Name=Gcaud3375.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=557bp
MTPAPSPTPTESSIFADHYIFLVPSLLFTQRAAQRFLERLRAHGGDGQVL
QPAEKGFRSVQALSQCDSRSAFNQFVVADAPILSKYSHLCAIPVRPTRWL
SDSLRDLRIKSPQFYPGATPSAQTRPSIRSSPSLTSKRNFSDTQLTGEEI
SLSYQSQPEKRRKTANDSANSPSEKGSQPPVVRNLLPLFEESECSPSNRS
SLLAERPAIRSGVSSRWACEIRPMLAASDFPMNVTICELLGVVQEAYSLK
KDHFRSLGYQRAIAKIRSLSYEILTIDDVHSLGDEKAIGARLQKKIIEII
TTRRLLQAEAVLSNPQNIAVKTLCGVWGIGPVKALGLVARGITSIQQLRE
ALTEEKNLLDVNQKIGLKRYEDLLHRIPRKHVAELELYVRRIAKRIDTSL
DITVAGSYLRGKSSCGDVDIMVVGSSEILRRAFPQVVKRMKQEGVLTDDL
IYGPGKYFGIFKFPGRRHGRIDLFSVPHEQYPYALLTYTGSAVFNRSMRA
KARTYGYSLSHKGMQRVCRNRHSQTKIGAPVQVKNEKDIFRILDIPYVPP
SARSIS*
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mRNA from alignment at NODE_1125_length_13517_cov_4.326531:6204..8051+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3375.t1 ID=Gcaud3375.t1|Name=Gcaud3375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1848bp|location=Sequence derived from alignment at NODE_1125_length_13517_cov_4.326531:6204..8051+ (Gracilaria caudata M_176_S67 male)
ATGACTCCCGCGCCCTCACCCACCCCCACCGAATCCTCTATTTTCGCAGA
CCATTATATCTTTCTCGTACCCAGTTTGCTCTTCACCCAGAGAGCCGCTC
AACGGTTTCTCGAGCGGCTTCGCGCGCACGGTGGAGATGGTCAAGTTCTG
CAACCAGCAGAAAAAGGCTTTCGTTCAGTTCAAGCTCTCTCACAGTGTGA
TTCAAGATCTGCATTTAATCAATTTGTCGTTGCTGATGCCCCCATTCTTT
CCAAGTACTCGCACTTATGCGCCATCCCGGTGAGACCTACTCGCTGGCTC
AGTGACAGTCTTCGTGATCTACGTATAAAGTCACCTCAATTTTACCCTGG
CGCTACCCCCTCAGCTCAGACTCGTCCTTCAATTCGGTCTTCACCAAGTC
TGACCTCAAAACGTAATTTCAGCGATACACAGTTGACTGGGGAGGAAATA
AGCTTGTCCTACCAGTCTCAGCCGGAGAAACGCAGAAAAACTGCCAATGA
TTCAGCGAACTCGCCTTCTGAAAAAGGGTCGCAACCTCCTGTTGTCAGGA
ATCTTCTGCCGCTATTCGAGGAAAGTGAATGCAGTCCTTCAAACAGGTCC
TCCCTTCTTGCTGAAAGACCCGCAATTCGTTCTGGCGTTTCCAGTAGATG
GGCATGTGAGATCCGGCCCATGCTTGCTGCATCTGATTTCCCTATGAACG
TTACGATTTGCGAGCTGCTCGGCGTTGTACAGGAAGCCTACTCGCTGAAG
AAGGATCACTTCCGGTCCTTGGGTTACCAGAGAGCTATTGCCAAGATTCG
TTCGCTTTCATACGAAATACTAACCATCGATGATGTCCATTCTCTTGGTG
ACGAGAAGGCGATCGGTGCAAGATTACAGAAAAAGATTATCGAGATCATC
ACCACCAGAAGGCTGCTTCAAGCTGAGGCAGTGTTGAGCAATCCTCAGAA
TATAGCTGTCAAAACTCTGTGCGGCGTGTGGGGGATTGGTCCAGTGAAGG
CGCTGGGCCTAGTTGCACGAGGAATAACTTCAATCCAACAGCTTCGTGAG
GCTTTGACCGAGGAGAAGAACTTGTTAGACGTGAATCAGAAGATTGGTCT
GAAACGCTATGAAGATCTTCTACACCGGATACCGAGAAAGCATGTAGCTG
AACTGGAACTCTATGTCCGAAGAATCGCAAAGCGAATAGATACATCGCTG
GATATCACAGTCGCAGGAAGTTATCTCCGGGGAAAGTCATCCTGCGGAGA
TGTCGATATCATGGTTGTTGGCTCCTCCGAAATACTAAGACGAGCTTTTC
CACAGGTCGTCAAACGTATGAAACAGGAGGGGGTTCTAACTGATGATCTC
ATTTACGGACCAGGAAAATATTTTGGTATCTTCAAGTTTCCGGGTCGTCG
TCACGGACGTATTGATTTGTTTTCTGTGCCTCACGAACAATACCCTTATG
CGCTTCTGACCTACACAGGTAGCGCAGTGTTTAACCGGTAAGTTTCTCGC
GTCTAATTTGTGATAGTCCTCACTTCAGTTTTTCTAACACAACAAATGAA
ATCTTTCGGGATATCTCTTACAAAACCACATCAGGTCAATGAGAGCCAAA
GCCCGAACTTATGGTTACAGTTTGAGCCATAAAGGAATGCAAAGGGTTTG
CAGAAACAGGCATTCTCAAACCAAGATAGTAAGTTTGAAATCTAAACGGA
CTGTGTGAATGTAGAGAATTAACATCATATACCGCACTCATTTTTGTCTA
CAATGCAGGGAGCTCCTGTTCAGGTGAAGAATGAGAAGGACATTTTCAGA
ATACTAGACATTCCTTATGTTCCCCCTTCGGCCCGGAGCATCTCATAA
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Coding sequence (CDS) from alignment at NODE_1125_length_13517_cov_4.326531:6204..8051+

>Gcaud3375.t1 ID=Gcaud3375.t1|Name=Gcaud3375.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1671bp|location=Sequence derived from alignment at NODE_1125_length_13517_cov_4.326531:6204..8051+ (Gracilaria caudata M_176_S67 male)
ATGACTCCCGCGCCCTCACCCACCCCCACCGAATCCTCTATTTTCGCAGA
CCATTATATCTTTCTCGTACCCAGTTTGCTCTTCACCCAGAGAGCCGCTC
AACGGTTTCTCGAGCGGCTTCGCGCGCACGGTGGAGATGGTCAAGTTCTG
CAACCAGCAGAAAAAGGCTTTCGTTCAGTTCAAGCTCTCTCACAGTGTGA
TTCAAGATCTGCATTTAATCAATTTGTCGTTGCTGATGCCCCCATTCTTT
CCAAGTACTCGCACTTATGCGCCATCCCGGTGAGACCTACTCGCTGGCTC
AGTGACAGTCTTCGTGATCTACGTATAAAGTCACCTCAATTTTACCCTGG
CGCTACCCCCTCAGCTCAGACTCGTCCTTCAATTCGGTCTTCACCAAGTC
TGACCTCAAAACGTAATTTCAGCGATACACAGTTGACTGGGGAGGAAATA
AGCTTGTCCTACCAGTCTCAGCCGGAGAAACGCAGAAAAACTGCCAATGA
TTCAGCGAACTCGCCTTCTGAAAAAGGGTCGCAACCTCCTGTTGTCAGGA
ATCTTCTGCCGCTATTCGAGGAAAGTGAATGCAGTCCTTCAAACAGGTCC
TCCCTTCTTGCTGAAAGACCCGCAATTCGTTCTGGCGTTTCCAGTAGATG
GGCATGTGAGATCCGGCCCATGCTTGCTGCATCTGATTTCCCTATGAACG
TTACGATTTGCGAGCTGCTCGGCGTTGTACAGGAAGCCTACTCGCTGAAG
AAGGATCACTTCCGGTCCTTGGGTTACCAGAGAGCTATTGCCAAGATTCG
TTCGCTTTCATACGAAATACTAACCATCGATGATGTCCATTCTCTTGGTG
ACGAGAAGGCGATCGGTGCAAGATTACAGAAAAAGATTATCGAGATCATC
ACCACCAGAAGGCTGCTTCAAGCTGAGGCAGTGTTGAGCAATCCTCAGAA
TATAGCTGTCAAAACTCTGTGCGGCGTGTGGGGGATTGGTCCAGTGAAGG
CGCTGGGCCTAGTTGCACGAGGAATAACTTCAATCCAACAGCTTCGTGAG
GCTTTGACCGAGGAGAAGAACTTGTTAGACGTGAATCAGAAGATTGGTCT
GAAACGCTATGAAGATCTTCTACACCGGATACCGAGAAAGCATGTAGCTG
AACTGGAACTCTATGTCCGAAGAATCGCAAAGCGAATAGATACATCGCTG
GATATCACAGTCGCAGGAAGTTATCTCCGGGGAAAGTCATCCTGCGGAGA
TGTCGATATCATGGTTGTTGGCTCCTCCGAAATACTAAGACGAGCTTTTC
CACAGGTCGTCAAACGTATGAAACAGGAGGGGGTTCTAACTGATGATCTC
ATTTACGGACCAGGAAAATATTTTGGTATCTTCAAGTTTCCGGGTCGTCG
TCACGGACGTATTGATTTGTTTTCTGTGCCTCACGAACAATACCCTTATG
CGCTTCTGACCTACACAGGTAGCGCAGTGTTTAACCGGTCAATGAGAGCC
AAAGCCCGAACTTATGGTTACAGTTTGAGCCATAAAGGAATGCAAAGGGT
TTGCAGAAACAGGCATTCTCAAACCAAGATAGGAGCTCCTGTTCAGGTGA
AGAATGAGAAGGACATTTTCAGAATACTAGACATTCCTTATGTTCCCCCT
TCGGCCCGGAGCATCTCATAA
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