Gcaud3373.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3373.t1
Unique Name	Gcaud3373.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	460

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1125_length_13517_cov_4.326531	contig	NODE_1125_length_13517_cov_4.326531:1453..2832 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706461.1
PFAMs	CLTH,LisH,SPRY
Max annot lvl	2759\|Eukaryota
GOs	GO:0000003,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006996,GO:0007010,GO:0007154,GO:0007155,GO:0007165,GO:0007259,GO:0007276,GO:0007281,GO:0007292,GO:0007299,GO:0007304,GO:0007306,GO:0007610,GO:0007631,GO:0008150,GO:0008536,GO:0009653,GO:0009888,GO:0009987,GO:0010927,GO:0016020,GO:0016043,GO:0017016,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022610,GO:0023052,GO:0030154,GO:0030536,GO:0030537,GO:0030703,GO:0030707,GO:0030855,GO:0031267,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0035556,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0044703,GO:0046843,GO:0048468,GO:0048477,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051704,GO:0051716,GO:0060249,GO:0060250,GO:0060429,GO:0065007,GO:0065008,GO:0071840,GO:0090136,GO:0097696,GO:0098609
Evalue	1.25e-88
EggNOG OGs	KOG1477@1\|root,KOG1477@2759\|Eukaryota
Description	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
COG category	F

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3373	Gcaud3373	Gracilaria caudata M_176_S67 male	gene	NODE_1125_length_13517_cov_4.326531 1453..2832 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3373.t1.stop1	Gcaud3373.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1125_length_13517_cov_4.326531 1453..1455 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3373.t1.CDS1	Gcaud3373.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1125_length_13517_cov_4.326531 1453..2832 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3373.t1.exon1	Gcaud3373.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1125_length_13517_cov_4.326531 1453..2832 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3373.t1.start1	Gcaud3373.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1125_length_13517_cov_4.326531 2830..2832 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3373.t1	Gcaud3373.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1125_length_13517_cov_4.326531 1453..2832 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1125_length_13517_cov_4.326531:1453..2832-
coding sequence from alignment at NODE_1125_length_13517_cov_4.326531:1453..2832-

mRNA sequence

>Gcaud3373.t1 ID=Gcaud3373.t1|Name=Gcaud3373.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=460bp
MRPPIYSLEQAVPLHRFRRRAADTPLCVNGVCTVLPGRHHIHSLAFSEED
KADHLQCSHAGLVVTYNGPGREEKDAASIRTSQPIPPNGIALYYFEISIV
DQGDTGRIGVGLCDRKVRLGKMPGWEAGSYAYHGDDGLLFRQTGIAGNSY
GPKYGTGDIIGCCWDLVDNIVFFTRNGKNLGTAFTNLTGVLYPTVGMQSM
NGSISANFGHKSFEFDIESYARQQRDKILASIMSKPLPQDYTILTDTVLM
YLMHNGYSHTAAAFAKDAGREQIYQRERDSMLKRQAVCDKVLQGDIDAAI
YDLEKQFPQVLKTQLNVRFLLLTQKFIEMIVSGASLEETVEYGRRELSVF
RDKEYIKSAQENDDSIPKTDKVLPYADILRDVYLLLAYGNPAESPTGHLT
KQSRREKVADNVNSAILASQGRPMRSLLERFICQNENILKHLMVMGNGPA
ALVSAQDML*

spliced messenger RNA

>Gcaud3373.t1 ID=Gcaud3373.t1|Name=Gcaud3373.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at NODE_1125_length_13517_cov_4.326531:1453..2832- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCTCCCATTTACTCTCTTGAACAGGCCGTACCCCTCCATCGCTT
CAGGCGCCGTGCCGCGGACACACCTCTCTGCGTAAACGGCGTTTGTACCG
TACTGCCCGGCCGACACCATATCCACTCACTCGCATTCTCCGAGGAGGAT
AAAGCAGACCATCTGCAATGCTCCCACGCCGGCTTAGTCGTCACGTACAA
TGGCCCAGGCCGCGAGGAGAAGGACGCCGCCTCCATCCGCACCTCCCAAC
CAATTCCCCCCAATGGCATTGCCCTCTATTATTTTGAGATCTCCATCGTT
GACCAGGGCGATACCGGTCGCATTGGAGTTGGCCTGTGCGATCGCAAGGT
CCGCCTCGGCAAAATGCCTGGCTGGGAAGCCGGTAGCTATGCCTATCACG
GCGACGACGGCCTCCTCTTCCGCCAGACCGGGATTGCCGGCAATTCTTAT
GGACCGAAGTATGGAACAGGAGATATCATCGGCTGCTGCTGGGATTTGGT
CGACAACATTGTCTTCTTCACCCGCAACGGGAAGAATCTTGGCACCGCCT
TCACTAACCTAACCGGCGTATTATACCCCACCGTCGGCATGCAATCCATG
AACGGTAGCATCAGCGCAAACTTCGGGCACAAATCCTTTGAATTCGATAT
TGAATCTTACGCCCGGCAGCAGCGCGATAAGATTCTCGCCTCCATCATGT
CGAAACCACTACCACAGGACTACACCATTCTTACCGACACAGTACTCATG
TATCTCATGCATAATGGTTATTCGCATACTGCAGCAGCTTTTGCCAAGGA
TGCCGGGCGCGAGCAAATATACCAAAGGGAGCGTGATTCTATGCTCAAGC
GCCAGGCTGTTTGTGACAAAGTTCTACAAGGTGACATAGACGCTGCTATA
TACGATTTGGAGAAGCAGTTTCCACAAGTTCTCAAGACGCAATTGAACGT
GCGTTTCCTGCTACTAACGCAAAAATTCATTGAAATGATTGTCAGCGGCG
CTAGTCTGGAAGAAACGGTGGAGTATGGCAGAAGAGAACTATCTGTTTTC
CGCGATAAGGAGTACATCAAATCAGCTCAAGAAAACGACGATTCCATTCC
CAAAACGGACAAAGTATTGCCGTATGCCGACATTTTGCGCGATGTTTACC
TGTTGCTGGCGTATGGAAATCCAGCTGAAAGCCCGACAGGTCATCTTACT
AAGCAGAGCAGACGGGAGAAGGTTGCTGACAATGTGAATTCAGCCATTTT
GGCATCGCAAGGGCGGCCGATGAGATCCTTACTGGAGCGGTTCATCTGCC
AGAATGAGAACATCTTGAAACATCTGATGGTGATGGGTAACGGCCCGGCA
GCGTTAGTATCTGCCCAGGATATGCTGTGA

protein sequence of Gcaud3373.t1

>Gcaud3373.t1 ID=Gcaud3373.t1|Name=Gcaud3373.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=460bp
MRPPIYSLEQAVPLHRFRRRAADTPLCVNGVCTVLPGRHHIHSLAFSEED
KADHLQCSHAGLVVTYNGPGREEKDAASIRTSQPIPPNGIALYYFEISIV
DQGDTGRIGVGLCDRKVRLGKMPGWEAGSYAYHGDDGLLFRQTGIAGNSY
GPKYGTGDIIGCCWDLVDNIVFFTRNGKNLGTAFTNLTGVLYPTVGMQSM
NGSISANFGHKSFEFDIESYARQQRDKILASIMSKPLPQDYTILTDTVLM
YLMHNGYSHTAAAFAKDAGREQIYQRERDSMLKRQAVCDKVLQGDIDAAI
YDLEKQFPQVLKTQLNVRFLLLTQKFIEMIVSGASLEETVEYGRRELSVF
RDKEYIKSAQENDDSIPKTDKVLPYADILRDVYLLLAYGNPAESPTGHLT
KQSRREKVADNVNSAILASQGRPMRSLLERFICQNENILKHLMVMGNGPA
ALVSAQDML*

mRNA from alignment at NODE_1125_length_13517_cov_4.326531:1453..2832-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3373.t1 ID=Gcaud3373.t1|Name=Gcaud3373.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at NODE_1125_length_13517_cov_4.326531:1453..2832- (Gracilaria caudata M_176_S67 male)
ATGCGCCCTCCCATTTACTCTCTTGAACAGGCCGTACCCCTCCATCGCTT
CAGGCGCCGTGCCGCGGACACACCTCTCTGCGTAAACGGCGTTTGTACCG
TACTGCCCGGCCGACACCATATCCACTCACTCGCATTCTCCGAGGAGGAT
AAAGCAGACCATCTGCAATGCTCCCACGCCGGCTTAGTCGTCACGTACAA
TGGCCCAGGCCGCGAGGAGAAGGACGCCGCCTCCATCCGCACCTCCCAAC
CAATTCCCCCCAATGGCATTGCCCTCTATTATTTTGAGATCTCCATCGTT
GACCAGGGCGATACCGGTCGCATTGGAGTTGGCCTGTGCGATCGCAAGGT
CCGCCTCGGCAAAATGCCTGGCTGGGAAGCCGGTAGCTATGCCTATCACG
GCGACGACGGCCTCCTCTTCCGCCAGACCGGGATTGCCGGCAATTCTTAT
GGACCGAAGTATGGAACAGGAGATATCATCGGCTGCTGCTGGGATTTGGT
CGACAACATTGTCTTCTTCACCCGCAACGGGAAGAATCTTGGCACCGCCT
TCACTAACCTAACCGGCGTATTATACCCCACCGTCGGCATGCAATCCATG
AACGGTAGCATCAGCGCAAACTTCGGGCACAAATCCTTTGAATTCGATAT
TGAATCTTACGCCCGGCAGCAGCGCGATAAGATTCTCGCCTCCATCATGT
CGAAACCACTACCACAGGACTACACCATTCTTACCGACACAGTACTCATG
TATCTCATGCATAATGGTTATTCGCATACTGCAGCAGCTTTTGCCAAGGA
TGCCGGGCGCGAGCAAATATACCAAAGGGAGCGTGATTCTATGCTCAAGC
GCCAGGCTGTTTGTGACAAAGTTCTACAAGGTGACATAGACGCTGCTATA
TACGATTTGGAGAAGCAGTTTCCACAAGTTCTCAAGACGCAATTGAACGT
GCGTTTCCTGCTACTAACGCAAAAATTCATTGAAATGATTGTCAGCGGCG
CTAGTCTGGAAGAAACGGTGGAGTATGGCAGAAGAGAACTATCTGTTTTC
CGCGATAAGGAGTACATCAAATCAGCTCAAGAAAACGACGATTCCATTCC
CAAAACGGACAAAGTATTGCCGTATGCCGACATTTTGCGCGATGTTTACC
TGTTGCTGGCGTATGGAAATCCAGCTGAAAGCCCGACAGGTCATCTTACT
AAGCAGAGCAGACGGGAGAAGGTTGCTGACAATGTGAATTCAGCCATTTT
GGCATCGCAAGGGCGGCCGATGAGATCCTTACTGGAGCGGTTCATCTGCC
AGAATGAGAACATCTTGAAACATCTGATGGTGATGGGTAACGGCCCGGCA
GCGTTAGTATCTGCCCAGGATATGCTGTGA

Coding sequence (CDS) from alignment at NODE_1125_length_13517_cov_4.326531:1453..2832-

>Gcaud3373.t1 ID=Gcaud3373.t1|Name=Gcaud3373.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1380bp|location=Sequence derived from alignment at NODE_1125_length_13517_cov_4.326531:1453..2832- (Gracilaria caudata M_176_S67 male)
ATGCGCCCTCCCATTTACTCTCTTGAACAGGCCGTACCCCTCCATCGCTT
CAGGCGCCGTGCCGCGGACACACCTCTCTGCGTAAACGGCGTTTGTACCG
TACTGCCCGGCCGACACCATATCCACTCACTCGCATTCTCCGAGGAGGAT
AAAGCAGACCATCTGCAATGCTCCCACGCCGGCTTAGTCGTCACGTACAA
TGGCCCAGGCCGCGAGGAGAAGGACGCCGCCTCCATCCGCACCTCCCAAC
CAATTCCCCCCAATGGCATTGCCCTCTATTATTTTGAGATCTCCATCGTT
GACCAGGGCGATACCGGTCGCATTGGAGTTGGCCTGTGCGATCGCAAGGT
CCGCCTCGGCAAAATGCCTGGCTGGGAAGCCGGTAGCTATGCCTATCACG
GCGACGACGGCCTCCTCTTCCGCCAGACCGGGATTGCCGGCAATTCTTAT
GGACCGAAGTATGGAACAGGAGATATCATCGGCTGCTGCTGGGATTTGGT
CGACAACATTGTCTTCTTCACCCGCAACGGGAAGAATCTTGGCACCGCCT
TCACTAACCTAACCGGCGTATTATACCCCACCGTCGGCATGCAATCCATG
AACGGTAGCATCAGCGCAAACTTCGGGCACAAATCCTTTGAATTCGATAT
TGAATCTTACGCCCGGCAGCAGCGCGATAAGATTCTCGCCTCCATCATGT
CGAAACCACTACCACAGGACTACACCATTCTTACCGACACAGTACTCATG
TATCTCATGCATAATGGTTATTCGCATACTGCAGCAGCTTTTGCCAAGGA
TGCCGGGCGCGAGCAAATATACCAAAGGGAGCGTGATTCTATGCTCAAGC
GCCAGGCTGTTTGTGACAAAGTTCTACAAGGTGACATAGACGCTGCTATA
TACGATTTGGAGAAGCAGTTTCCACAAGTTCTCAAGACGCAATTGAACGT
GCGTTTCCTGCTACTAACGCAAAAATTCATTGAAATGATTGTCAGCGGCG
CTAGTCTGGAAGAAACGGTGGAGTATGGCAGAAGAGAACTATCTGTTTTC
CGCGATAAGGAGTACATCAAATCAGCTCAAGAAAACGACGATTCCATTCC
CAAAACGGACAAAGTATTGCCGTATGCCGACATTTTGCGCGATGTTTACC
TGTTGCTGGCGTATGGAAATCCAGCTGAAAGCCCGACAGGTCATCTTACT
AAGCAGAGCAGACGGGAGAAGGTTGCTGACAATGTGAATTCAGCCATTTT
GGCATCGCAAGGGCGGCCGATGAGATCCTTACTGGAGCGGTTCATCTGCC
AGAATGAGAACATCTTGAAACATCTGATGGTGATGGGTAACGGCCCGGCA
GCGTTAGTATCTGCCCAGGATATGCTGTGA