Gcaud3372.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3372.t1
Unique NameGcaud3372.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1125_length_13517_cov_4.326531contigNODE_1125_length_13517_cov_4.326531:536..1207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog349521.HCH_04907
PFAMsACT_6
Max annot lvl135619|Oceanospirillales
KEGG koko:K03567
KEGG Pathwayko02026,map02026
Evalue1.29e-17
EggNOG OGsCOG2716@1|root,COG2716@2|Bacteria,1R7W7@1224|Proteobacteria,1RSDP@1236|Gammaproteobacteria,1XJWK@135619|Oceanospirillales
Descriptionglycine cleavage system
COG categoryE
BRITEko00000,ko00001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3372Gcaud3372Gracilaria caudata M_176_S67 malegeneNODE_1125_length_13517_cov_4.326531 536..1207 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3372.t1.start1Gcaud3372.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1125_length_13517_cov_4.326531 536..538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3372.t1.CDS1Gcaud3372.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1125_length_13517_cov_4.326531 536..1207 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3372.t1.exon1Gcaud3372.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1125_length_13517_cov_4.326531 536..1207 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3372.t1.stop1Gcaud3372.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1125_length_13517_cov_4.326531 1205..1207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3372.t1Gcaud3372.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1125_length_13517_cov_4.326531 536..1207 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3372.t1 ID=Gcaud3372.t1|Name=Gcaud3372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=224bp
MSLASRLPALFRLRPAPALAMGRLTTIACSSQPARTPEPATAANTDPRPH
HAVISVAGRDRSGIVNTFAKAVEKYKANIEESKMAILGGDFAMIVYISME
KDADAIDLERLLHEQLPEFSITLRTTTAPADEHPDEPMWRISVEAPDQPG
IASAVSQALATHGGHVHEMETETSTAPFAGYALFILNGRVSMADAELDKI
SDALTLVEEKFGASITLDQISKA*
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spliced messenger RNA

>Gcaud3372.t1 ID=Gcaud3372.t1|Name=Gcaud3372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=672bp|location=Sequence derived from alignment at NODE_1125_length_13517_cov_4.326531:536..1207+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCGCTTCTCGCCTTCCCGCACTTTTCCGCCTTCGTCCGGCCCC
AGCTCTCGCGATGGGACGTCTCACGACCATTGCATGCTCGTCGCAACCAG
CGCGGACGCCCGAGCCGGCTACCGCCGCCAACACAGACCCCCGTCCGCAC
CACGCAGTAATCTCTGTGGCCGGCCGCGACCGCAGCGGCATCGTCAACAC
ATTCGCCAAGGCTGTCGAGAAGTACAAGGCCAACATCGAGGAGTCAAAAA
TGGCCATCCTGGGCGGCGACTTTGCAATGATTGTGTACATCAGCATGGAG
AAGGACGCCGACGCAATCGACTTGGAGAGACTGTTGCATGAGCAGTTGCC
GGAGTTTTCCATCACACTGCGAACTACCACCGCCCCAGCAGACGAACATC
CTGATGAACCCATGTGGAGAATCTCCGTCGAGGCTCCGGACCAACCAGGT
ATTGCGTCTGCGGTTTCGCAGGCGCTGGCCACGCATGGCGGGCATGTCCA
CGAGATGGAAACCGAGACTAGCACTGCTCCGTTCGCCGGTTACGCGCTCT
TCATTCTTAACGGCCGTGTTAGCATGGCCGACGCCGAGCTAGACAAGATC
TCAGACGCCCTCACACTCGTAGAAGAGAAATTTGGAGCCTCCATTACTCT
AGACCAAATCTCGAAGGCCTAG
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protein sequence of Gcaud3372.t1

>Gcaud3372.t1 ID=Gcaud3372.t1|Name=Gcaud3372.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=224bp
MSLASRLPALFRLRPAPALAMGRLTTIACSSQPARTPEPATAANTDPRPH
HAVISVAGRDRSGIVNTFAKAVEKYKANIEESKMAILGGDFAMIVYISME
KDADAIDLERLLHEQLPEFSITLRTTTAPADEHPDEPMWRISVEAPDQPG
IASAVSQALATHGGHVHEMETETSTAPFAGYALFILNGRVSMADAELDKI
SDALTLVEEKFGASITLDQISKA*
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mRNA from alignment at NODE_1125_length_13517_cov_4.326531:536..1207+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3372.t1 ID=Gcaud3372.t1|Name=Gcaud3372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=672bp|location=Sequence derived from alignment at NODE_1125_length_13517_cov_4.326531:536..1207+ (Gracilaria caudata M_176_S67 male)
ATGTCGCTCGCTTCTCGCCTTCCCGCACTTTTCCGCCTTCGTCCGGCCCC
AGCTCTCGCGATGGGACGTCTCACGACCATTGCATGCTCGTCGCAACCAG
CGCGGACGCCCGAGCCGGCTACCGCCGCCAACACAGACCCCCGTCCGCAC
CACGCAGTAATCTCTGTGGCCGGCCGCGACCGCAGCGGCATCGTCAACAC
ATTCGCCAAGGCTGTCGAGAAGTACAAGGCCAACATCGAGGAGTCAAAAA
TGGCCATCCTGGGCGGCGACTTTGCAATGATTGTGTACATCAGCATGGAG
AAGGACGCCGACGCAATCGACTTGGAGAGACTGTTGCATGAGCAGTTGCC
GGAGTTTTCCATCACACTGCGAACTACCACCGCCCCAGCAGACGAACATC
CTGATGAACCCATGTGGAGAATCTCCGTCGAGGCTCCGGACCAACCAGGT
ATTGCGTCTGCGGTTTCGCAGGCGCTGGCCACGCATGGCGGGCATGTCCA
CGAGATGGAAACCGAGACTAGCACTGCTCCGTTCGCCGGTTACGCGCTCT
TCATTCTTAACGGCCGTGTTAGCATGGCCGACGCCGAGCTAGACAAGATC
TCAGACGCCCTCACACTCGTAGAAGAGAAATTTGGAGCCTCCATTACTCT
AGACCAAATCTCGAAGGCCTAG
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Coding sequence (CDS) from alignment at NODE_1125_length_13517_cov_4.326531:536..1207+

>Gcaud3372.t1 ID=Gcaud3372.t1|Name=Gcaud3372.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=672bp|location=Sequence derived from alignment at NODE_1125_length_13517_cov_4.326531:536..1207+ (Gracilaria caudata M_176_S67 male)
ATGTCGCTCGCTTCTCGCCTTCCCGCACTTTTCCGCCTTCGTCCGGCCCC
AGCTCTCGCGATGGGACGTCTCACGACCATTGCATGCTCGTCGCAACCAG
CGCGGACGCCCGAGCCGGCTACCGCCGCCAACACAGACCCCCGTCCGCAC
CACGCAGTAATCTCTGTGGCCGGCCGCGACCGCAGCGGCATCGTCAACAC
ATTCGCCAAGGCTGTCGAGAAGTACAAGGCCAACATCGAGGAGTCAAAAA
TGGCCATCCTGGGCGGCGACTTTGCAATGATTGTGTACATCAGCATGGAG
AAGGACGCCGACGCAATCGACTTGGAGAGACTGTTGCATGAGCAGTTGCC
GGAGTTTTCCATCACACTGCGAACTACCACCGCCCCAGCAGACGAACATC
CTGATGAACCCATGTGGAGAATCTCCGTCGAGGCTCCGGACCAACCAGGT
ATTGCGTCTGCGGTTTCGCAGGCGCTGGCCACGCATGGCGGGCATGTCCA
CGAGATGGAAACCGAGACTAGCACTGCTCCGTTCGCCGGTTACGCGCTCT
TCATTCTTAACGGCCGTGTTAGCATGGCCGACGCCGAGCTAGACAAGATC
TCAGACGCCCTCACACTCGTAGAAGAGAAATTTGGAGCCTCCATTACTCT
AGACCAAATCTCGAAGGCCTAG
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