Gcaud3371.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3371.t1
Unique Name	Gcaud3371.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_179_length_39915_cov_4.496535	contig	NODE_179_length_39915_cov_4.496535:37914..38966 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	218851.Aquca_014_00787.1
Preferred name	CCR2
PFAMs	Epimerase
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00004,RC00566
KEGG ko	ko:K09753
KEGG Reaction	R01615,R01941,R02193,R02220,R02506,R06569
KEGG Pathway	ko00940,ko01100,ko01110,map00940,map01100,map01110
KEGG Module	M00039
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006950,GO:0007623,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009409,GO:0009628,GO:0009698,GO:0009699,GO:0009808,GO:0009809,GO:0009987,GO:0016491,GO:0016620,GO:0016621,GO:0016903,GO:0019438,GO:0019748,GO:0042752,GO:0042754,GO:0044237,GO:0044249,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0048511,GO:0048519,GO:0050789,GO:0050896,GO:0055114,GO:0065007,GO:0071704,GO:1901360,GO:1901362,GO:1901576
Evalue	2.51e-42
EggNOG OGs	COG0451@1\|root,KOG1502@2759\|Eukaryota,37KK8@33090\|Viridiplantae,3G7E0@35493\|Streptophyta
EC	1.2.1.44
Description	Cinnamoyl-CoA reductase
COG category	V
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3371	Gcaud3371	Gracilaria caudata M_176_S67 male	gene	NODE_179_length_39915_cov_4.496535 37914..38966 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3371.t1.stop1	Gcaud3371.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_179_length_39915_cov_4.496535 37914..37916 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3371.t1.CDS1	Gcaud3371.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_179_length_39915_cov_4.496535 37914..38966 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3371.t1.exon1	Gcaud3371.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_179_length_39915_cov_4.496535 37914..38966 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3371.t1.start1	Gcaud3371.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_179_length_39915_cov_4.496535 38964..38966 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3371.t1	Gcaud3371.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_179_length_39915_cov_4.496535 37914..38966 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_179_length_39915_cov_4.496535:37914..38966-
coding sequence from alignment at NODE_179_length_39915_cov_4.496535:37914..38966-

mRNA sequence

>Gcaud3371.t1 ID=Gcaud3371.t1|Name=Gcaud3371.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp
MESSSEQSVLVTGATSFVGSHVIAALLARGFVVRGTEPIFTNDVQQALKS
LPRSENLSLLHMDLKEQESFLQPLAGCRALIHVATPVLLPLNGSLPFRTK
DEAFQKQIKPAVEGTEALFTAAARAGVRRIVLTSSTASMLAQRTMPPMLD
ENCWSDEEFCKETMMTHPYGAYRLAKVQQEKVARKVAETMSLQLVCINPG
YIVGPSLLPAVNGSVAMLLELLEGRGCGVARCKPGMIPDQYCCLIDVREV
AMAHVLALEQEQVAGRIVALSQSPLYVDMYRKLCEHDTFKKYPQRPLDST
KSRTKLPYDNSKMRQLGVKEIPWEESLRESASSLAAYGHIVRGIDELNNA
*

spliced messenger RNA

>Gcaud3371.t1 ID=Gcaud3371.t1|Name=Gcaud3371.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:37914..38966- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCCTCATCAGAGCAATCTGTGCTCGTAACTGGCGCAACTTCATT
TGTTGGCTCACATGTGATTGCCGCTCTTCTCGCTCGCGGTTTTGTCGTGC
GCGGCACCGAACCTATCTTTACAAATGATGTTCAGCAAGCTCTTAAGTCG
CTGCCACGCTCTGAAAACCTCTCCCTCCTTCACATGGATCTGAAAGAGCA
AGAATCGTTTCTTCAACCTTTAGCTGGTTGCCGAGCTCTCATTCATGTTG
CGACGCCCGTTCTGCTTCCCCTGAATGGTAGTTTACCGTTTAGGACAAAA
GATGAAGCTTTCCAAAAGCAGATCAAACCGGCCGTGGAAGGAACAGAAGC
GTTGTTTACTGCAGCAGCCAGGGCTGGTGTGAGAAGAATTGTATTGACCT
CATCGACAGCATCCATGCTTGCCCAACGAACCATGCCCCCTATGCTGGAT
GAGAATTGTTGGAGCGACGAAGAATTCTGCAAGGAGACAATGATGACTCA
CCCTTACGGGGCGTACCGACTAGCCAAAGTACAGCAGGAGAAGGTCGCCA
GGAAGGTGGCGGAGACGATGTCGCTTCAGCTTGTTTGCATTAATCCAGGA
TATATTGTTGGACCTTCACTACTTCCTGCTGTGAATGGTAGTGTCGCGAT
GCTTCTTGAGCTCCTCGAGGGCCGTGGCTGTGGTGTGGCACGATGTAAAC
CTGGAATGATTCCAGATCAATACTGTTGTTTGATTGACGTTCGCGAAGTA
GCGATGGCACACGTTCTGGCTTTGGAACAAGAGCAAGTGGCGGGTCGCAT
TGTGGCATTATCACAGTCACCGCTTTATGTCGATATGTACAGGAAGCTTT
GCGAACATGATACTTTCAAGAAATACCCACAGCGCCCGCTAGACAGCACT
AAATCGAGAACAAAGCTGCCATATGATAATAGCAAGATGCGACAATTGGG
CGTGAAGGAGATTCCGTGGGAGGAGAGCCTCAGAGAGAGTGCATCTTCAT
TGGCAGCATACGGACATATCGTAAGAGGCATAGATGAGTTGAATAATGCT
TAG

protein sequence of Gcaud3371.t1

>Gcaud3371.t1 ID=Gcaud3371.t1|Name=Gcaud3371.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=351bp
MESSSEQSVLVTGATSFVGSHVIAALLARGFVVRGTEPIFTNDVQQALKS
LPRSENLSLLHMDLKEQESFLQPLAGCRALIHVATPVLLPLNGSLPFRTK
DEAFQKQIKPAVEGTEALFTAAARAGVRRIVLTSSTASMLAQRTMPPMLD
ENCWSDEEFCKETMMTHPYGAYRLAKVQQEKVARKVAETMSLQLVCINPG
YIVGPSLLPAVNGSVAMLLELLEGRGCGVARCKPGMIPDQYCCLIDVREV
AMAHVLALEQEQVAGRIVALSQSPLYVDMYRKLCEHDTFKKYPQRPLDST
KSRTKLPYDNSKMRQLGVKEIPWEESLRESASSLAAYGHIVRGIDELNNA
*

mRNA from alignment at NODE_179_length_39915_cov_4.496535:37914..38966-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3371.t1 ID=Gcaud3371.t1|Name=Gcaud3371.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:37914..38966- (Gracilaria caudata M_176_S67 male)
ATGGAATCCTCATCAGAGCAATCTGTGCTCGTAACTGGCGCAACTTCATT
TGTTGGCTCACATGTGATTGCCGCTCTTCTCGCTCGCGGTTTTGTCGTGC
GCGGCACCGAACCTATCTTTACAAATGATGTTCAGCAAGCTCTTAAGTCG
CTGCCACGCTCTGAAAACCTCTCCCTCCTTCACATGGATCTGAAAGAGCA
AGAATCGTTTCTTCAACCTTTAGCTGGTTGCCGAGCTCTCATTCATGTTG
CGACGCCCGTTCTGCTTCCCCTGAATGGTAGTTTACCGTTTAGGACAAAA
GATGAAGCTTTCCAAAAGCAGATCAAACCGGCCGTGGAAGGAACAGAAGC
GTTGTTTACTGCAGCAGCCAGGGCTGGTGTGAGAAGAATTGTATTGACCT
CATCGACAGCATCCATGCTTGCCCAACGAACCATGCCCCCTATGCTGGAT
GAGAATTGTTGGAGCGACGAAGAATTCTGCAAGGAGACAATGATGACTCA
CCCTTACGGGGCGTACCGACTAGCCAAAGTACAGCAGGAGAAGGTCGCCA
GGAAGGTGGCGGAGACGATGTCGCTTCAGCTTGTTTGCATTAATCCAGGA
TATATTGTTGGACCTTCACTACTTCCTGCTGTGAATGGTAGTGTCGCGAT
GCTTCTTGAGCTCCTCGAGGGCCGTGGCTGTGGTGTGGCACGATGTAAAC
CTGGAATGATTCCAGATCAATACTGTTGTTTGATTGACGTTCGCGAAGTA
GCGATGGCACACGTTCTGGCTTTGGAACAAGAGCAAGTGGCGGGTCGCAT
TGTGGCATTATCACAGTCACCGCTTTATGTCGATATGTACAGGAAGCTTT
GCGAACATGATACTTTCAAGAAATACCCACAGCGCCCGCTAGACAGCACT
AAATCGAGAACAAAGCTGCCATATGATAATAGCAAGATGCGACAATTGGG
CGTGAAGGAGATTCCGTGGGAGGAGAGCCTCAGAGAGAGTGCATCTTCAT
TGGCAGCATACGGACATATCGTAAGAGGCATAGATGAGTTGAATAATGCT
TAG

Coding sequence (CDS) from alignment at NODE_179_length_39915_cov_4.496535:37914..38966-

>Gcaud3371.t1 ID=Gcaud3371.t1|Name=Gcaud3371.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1053bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:37914..38966- (Gracilaria caudata M_176_S67 male)
ATGGAATCCTCATCAGAGCAATCTGTGCTCGTAACTGGCGCAACTTCATT
TGTTGGCTCACATGTGATTGCCGCTCTTCTCGCTCGCGGTTTTGTCGTGC
GCGGCACCGAACCTATCTTTACAAATGATGTTCAGCAAGCTCTTAAGTCG
CTGCCACGCTCTGAAAACCTCTCCCTCCTTCACATGGATCTGAAAGAGCA
AGAATCGTTTCTTCAACCTTTAGCTGGTTGCCGAGCTCTCATTCATGTTG
CGACGCCCGTTCTGCTTCCCCTGAATGGTAGTTTACCGTTTAGGACAAAA
GATGAAGCTTTCCAAAAGCAGATCAAACCGGCCGTGGAAGGAACAGAAGC
GTTGTTTACTGCAGCAGCCAGGGCTGGTGTGAGAAGAATTGTATTGACCT
CATCGACAGCATCCATGCTTGCCCAACGAACCATGCCCCCTATGCTGGAT
GAGAATTGTTGGAGCGACGAAGAATTCTGCAAGGAGACAATGATGACTCA
CCCTTACGGGGCGTACCGACTAGCCAAAGTACAGCAGGAGAAGGTCGCCA
GGAAGGTGGCGGAGACGATGTCGCTTCAGCTTGTTTGCATTAATCCAGGA
TATATTGTTGGACCTTCACTACTTCCTGCTGTGAATGGTAGTGTCGCGAT
GCTTCTTGAGCTCCTCGAGGGCCGTGGCTGTGGTGTGGCACGATGTAAAC
CTGGAATGATTCCAGATCAATACTGTTGTTTGATTGACGTTCGCGAAGTA
GCGATGGCACACGTTCTGGCTTTGGAACAAGAGCAAGTGGCGGGTCGCAT
TGTGGCATTATCACAGTCACCGCTTTATGTCGATATGTACAGGAAGCTTT
GCGAACATGATACTTTCAAGAAATACCCACAGCGCCCGCTAGACAGCACT
AAATCGAGAACAAAGCTGCCATATGATAATAGCAAGATGCGACAATTGGG
CGTGAAGGAGATTCCGTGGGAGGAGAGCCTCAGAGAGAGTGCATCTTCAT
TGGCAGCATACGGACATATCGTAAGAGGCATAGATGAGTTGAATAATGCT
TAG