Gcaud3368.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3368.t1
Unique NameGcaud3368.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_179_length_39915_cov_4.496535contigNODE_179_length_39915_cov_4.496535:29863..30711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SM42
PFAMsCwf_Cwc_15
Max annot lvl3041|Chlorophyta
KEGG koko:K12863
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Evalue2.47e-15
EggNOG OGsKOG3228@1|root,KOG3228@2759|Eukaryota,37RUK@33090|Viridiplantae,34HWP@3041|Chlorophyta
DescriptionCwf15 Cwc15 cell cycle control protein. This family represents Cwf15 Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3368Gcaud3368Gracilaria caudata M_176_S67 malegeneNODE_179_length_39915_cov_4.496535 29863..30711 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3368.t1.start1Gcaud3368.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_179_length_39915_cov_4.496535 29863..29865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3368.t1.CDS1Gcaud3368.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_179_length_39915_cov_4.496535 29863..30711 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3368.t1.exon1Gcaud3368.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_179_length_39915_cov_4.496535 29863..30711 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3368.t1.stop1Gcaud3368.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_179_length_39915_cov_4.496535 30709..30711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3368.t1Gcaud3368.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_179_length_39915_cov_4.496535 29863..30711 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3368.t1 ID=Gcaud3368.t1|Name=Gcaud3368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=283bp
MTTAHRATWKAARGGLQEEGSFRLHAPSVAVSGKDAPTERTLKKRHFTPD
ESSRDEMRMRIENEEEPLGKRPRRSRFGPTPQADAETDDGNSDVAPKLLP
PPEIEGVDGGDGGKDKGGRSHGEEEQGVADDSQEAGTPGRALDHTPEENE
HDEPQEDSEDEDDESEEDEAELLAELERIRKEREFEKAKKQAEEQERLER
EESSKAASENPLLSNLANFNDEISETASIATGSVPAFAVRRRWDDDVVFR
NQARGERKHKPRFLNDTIRNDFHRRFMRQYMR*
back to top

spliced messenger RNA

>Gcaud3368.t1 ID=Gcaud3368.t1|Name=Gcaud3368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:29863..30711+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACGGCACATCGCGCAACATGGAAGGCGGCAAGAGGTGGTTTGCA
GGAGGAAGGCAGTTTTCGCCTACACGCGCCATCAGTTGCTGTATCCGGAA
AGGACGCCCCCACGGAGCGAACGTTGAAGAAACGTCACTTCACTCCCGAC
GAGTCCTCGCGCGACGAGATGCGTATGAGAATTGAGAACGAAGAAGAGCC
TTTGGGCAAGAGACCGCGCCGTTCGCGCTTCGGACCGACCCCTCAAGCCG
ACGCAGAGACGGATGACGGTAATAGCGATGTGGCCCCAAAGCTTTTACCA
CCACCTGAGATAGAGGGCGTGGATGGAGGTGATGGGGGGAAAGACAAAGG
GGGACGTTCTCATGGCGAAGAGGAACAAGGTGTTGCTGATGACTCTCAAG
AGGCTGGAACACCTGGAAGAGCACTCGATCATACGCCCGAAGAGAACGAA
CACGACGAACCTCAAGAAGATTCTGAAGACGAAGACGACGAATCCGAGGA
GGACGAAGCCGAGCTTCTAGCAGAGCTCGAACGAATTCgaaaagaaagag
aatttgaaaaggcaaagaaacaagcagaggaacaggaGCGACTAGAGCGA
GAGGAGAGTTCAAAAGCAGCCTCTGAAAACCCATTGCTTTCAAACTTGGC
GAACTTCAATGATGAGATTAGCGAAACTGCGAGTATTGCCACGGGCAGTG
TACCGGCTTTCGCGGTCAGAAGACGGTGGGACGATGATGTAGTGTTTCGG
AATCAGGCACGAGGCGAGCGCAAGCACAAGCCCAGGTTTCTGAATGATAC
CATCAGAAATGACTTCCACAGGAGGTTCATGAGGCAATATATGCGATAG
back to top

protein sequence of Gcaud3368.t1

>Gcaud3368.t1 ID=Gcaud3368.t1|Name=Gcaud3368.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
MTTAHRATWKAARGGLQEEGSFRLHAPSVAVSGKDAPTERTLKKRHFTPD
ESSRDEMRMRIENEEEPLGKRPRRSRFGPTPQADAETDDGNSDVAPKLLP
PPEIEGVDGGDGGKDKGGRSHGEEEQGVADDSQEAGTPGRALDHTPEENE
HDEPQEDSEDEDDESEEDEAELLAELERIRKEREFEKAKKQAEEQERLER
EESSKAASENPLLSNLANFNDEISETASIATGSVPAFAVRRRWDDDVVFR
NQARGERKHKPRFLNDTIRNDFHRRFMRQYMR*
back to top

mRNA from alignment at NODE_179_length_39915_cov_4.496535:29863..30711+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3368.t1 ID=Gcaud3368.t1|Name=Gcaud3368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:29863..30711+ (Gracilaria caudata M_176_S67 male)
ATGACGACGGCACATCGCGCAACATGGAAGGCGGCAAGAGGTGGTTTGCA
GGAGGAAGGCAGTTTTCGCCTACACGCGCCATCAGTTGCTGTATCCGGAA
AGGACGCCCCCACGGAGCGAACGTTGAAGAAACGTCACTTCACTCCCGAC
GAGTCCTCGCGCGACGAGATGCGTATGAGAATTGAGAACGAAGAAGAGCC
TTTGGGCAAGAGACCGCGCCGTTCGCGCTTCGGACCGACCCCTCAAGCCG
ACGCAGAGACGGATGACGGTAATAGCGATGTGGCCCCAAAGCTTTTACCA
CCACCTGAGATAGAGGGCGTGGATGGAGGTGATGGGGGGAAAGACAAAGG
GGGACGTTCTCATGGCGAAGAGGAACAAGGTGTTGCTGATGACTCTCAAG
AGGCTGGAACACCTGGAAGAGCACTCGATCATACGCCCGAAGAGAACGAA
CACGACGAACCTCAAGAAGATTCTGAAGACGAAGACGACGAATCCGAGGA
GGACGAAGCCGAGCTTCTAGCAGAGCTCGAACGAATTCgaaaagaaagag
aatttgaaaaggcaaagaaacaagcagaggaacaggaGCGACTAGAGCGA
GAGGAGAGTTCAAAAGCAGCCTCTGAAAACCCATTGCTTTCAAACTTGGC
GAACTTCAATGATGAGATTAGCGAAACTGCGAGTATTGCCACGGGCAGTG
TACCGGCTTTCGCGGTCAGAAGACGGTGGGACGATGATGTAGTGTTTCGG
AATCAGGCACGAGGCGAGCGCAAGCACAAGCCCAGGTTTCTGAATGATAC
CATCAGAAATGACTTCCACAGGAGGTTCATGAGGCAATATATGCGATAG
back to top

Coding sequence (CDS) from alignment at NODE_179_length_39915_cov_4.496535:29863..30711+

>Gcaud3368.t1 ID=Gcaud3368.t1|Name=Gcaud3368.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=849bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:29863..30711+ (Gracilaria caudata M_176_S67 male)
ATGACGACGGCACATCGCGCAACATGGAAGGCGGCAAGAGGTGGTTTGCA
GGAGGAAGGCAGTTTTCGCCTACACGCGCCATCAGTTGCTGTATCCGGAA
AGGACGCCCCCACGGAGCGAACGTTGAAGAAACGTCACTTCACTCCCGAC
GAGTCCTCGCGCGACGAGATGCGTATGAGAATTGAGAACGAAGAAGAGCC
TTTGGGCAAGAGACCGCGCCGTTCGCGCTTCGGACCGACCCCTCAAGCCG
ACGCAGAGACGGATGACGGTAATAGCGATGTGGCCCCAAAGCTTTTACCA
CCACCTGAGATAGAGGGCGTGGATGGAGGTGATGGGGGGAAAGACAAAGG
GGGACGTTCTCATGGCGAAGAGGAACAAGGTGTTGCTGATGACTCTCAAG
AGGCTGGAACACCTGGAAGAGCACTCGATCATACGCCCGAAGAGAACGAA
CACGACGAACCTCAAGAAGATTCTGAAGACGAAGACGACGAATCCGAGGA
GGACGAAGCCGAGCTTCTAGCAGAGCTCGAACGAATTCgaaaagaaagag
aatttgaaaaggcaaagaaacaagcagaggaacaggaGCGACTAGAGCGA
GAGGAGAGTTCAAAAGCAGCCTCTGAAAACCCATTGCTTTCAAACTTGGC
GAACTTCAATGATGAGATTAGCGAAACTGCGAGTATTGCCACGGGCAGTG
TACCGGCTTTCGCGGTCAGAAGACGGTGGGACGATGATGTAGTGTTTCGG
AATCAGGCACGAGGCGAGCGCAAGCACAAGCCCAGGTTTCTGAATGATAC
CATCAGAAATGACTTCCACAGGAGGTTCATGAGGCAATATATGCGATAG
back to top