Gcaud3364.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3364.t1
Unique NameGcaud3364.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_179_length_39915_cov_4.496535contigNODE_179_length_39915_cov_4.496535:19356..20351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10025604
PFAMsBPL_C,BPL_LplA_LipB
Max annot lvl35493|Streptophyta
KEGG rclassRC00043,RC00070,RC00096,RC02896
KEGG koko:K01942
KEGG ReactionR01074,R05145
KEGG Pathwayko00780,ko01100,map00780,map01100
GOsGO:0000785,GO:0001101,GO:0003674,GO:0003824,GO:0004077,GO:0004078,GO:0004080,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005694,GO:0005737,GO:0005829,GO:0006325,GO:0006464,GO:0006807,GO:0006996,GO:0007584,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009305,GO:0009374,GO:0009507,GO:0009536,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0014070,GO:0016043,GO:0016363,GO:0016569,GO:0016570,GO:0016874,GO:0016879,GO:0018271,GO:0019538,GO:0019842,GO:0019899,GO:0031406,GO:0031667,GO:0031974,GO:0031981,GO:0033218,GO:0033273,GO:0033293,GO:0034399,GO:0036094,GO:0036211,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042966,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048037,GO:0050662,GO:0050896,GO:0051276,GO:0070013,GO:0070781,GO:0071110,GO:0071704,GO:0071840,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901576,GO:1901681,GO:1901698,GO:1901700
Evalue1.66e-41
EggNOG OGsCOG0340@1|root,KOG1536@2759|Eukaryota,37PT9@33090|Viridiplantae,3GCAK@35493|Streptophyta,4JM2N@91835|fabids
EC6.3.4.10,6.3.4.11,6.3.4.15,6.3.4.9
DescriptionBiotin--protein ligase
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3364Gcaud3364Gracilaria caudata M_176_S67 malegeneNODE_179_length_39915_cov_4.496535 19356..20351 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3364.t1.start1Gcaud3364.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_179_length_39915_cov_4.496535 19356..19358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3364.t1.CDS1Gcaud3364.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_179_length_39915_cov_4.496535 19356..20351 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3364.t1.exon1Gcaud3364.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_179_length_39915_cov_4.496535 19356..20351 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3364.t1.stop1Gcaud3364.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_179_length_39915_cov_4.496535 20349..20351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3364.t1Gcaud3364.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_179_length_39915_cov_4.496535 19356..20351 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3364.t1 ID=Gcaud3364.t1|Name=Gcaud3364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=332bp
MEAAEELRIHCTTPQAHDQLMRRHASDLLCLTLSHNVKLFSPEETLETAS
QLLHDDPHSKSEPYSEQKQLDMAVVQRYLETDWCGHMLVALPQTATTQNV
LLRLMPWCNFGSVAVTGFQTKGRGRRGAIWKSPIGSVAISVKVIVPSAKP
ETLTFLQFIAALAVVEAAKRNWNVPLRIKWPNDIYKHGDKLGGVLCEGAL
RNNQFEVIVGVGVNVTNQYPTTCLLDHRITHGREIFVAQFLVEFERLYNT
YREHGFDGELRNMYLDAWMHSGQQLAIGGPHGARAVVHGLAPNGWVRVLR
EDNNSFEDLPPESTSLDMKNSILKEKDVGPR*
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spliced messenger RNA

>Gcaud3364.t1 ID=Gcaud3364.t1|Name=Gcaud3364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=996bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:19356..20351+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCAGCAGAAGAGCTCAGGATCCACTGTACCACCCCTCAAGCGCA
TGATCAACTGATGCGACGTCATGCCAGTGATCTCCTTTGTCTCACACTAT
CTCACAACGTAAAGCTATTTTCCCCGGAAGAGACGCTGGAAACTGCCTCT
CAATTGCTTCATGACGATCCTCATTCTAAAAGCGAGCCTTATTCAGAACA
AAAGCAGTTGGATATGGCTGTTGTGCAACGCTACCTGGAAACGGACTGGT
GCGGCCATATGTTGGTTGCCCTTCCGCAAACTGCAACCACCCAAAATGTT
CTTCTCCGGCTGATGCCGTGGTGCAACTTCGGCAGCGTGGCAGTTACTGG
TTTCCAAACCAAGGGAAGAGGCCGTCGTGGAGCGATATGGAAGTCTCCGA
TCGGCAGTGTCGCCATTTCCGTCAAAGTCATCGTTCCGAGTGCTAAACCC
GAAACGCTAACCTTTCTCCAATTCATTGCCGCTTTGGCTGTCGTGGAAGC
CGCGAAACGAAATTGGAATGTGCCGTTGCGTATCAAATGGCCTAATGATA
TATATAAACATGGTGATAAACTAGGTGGTGTCCTTTGCGAGGGAGCACTT
CGTAACAATCAGTTTGAAGTGATCGTCGGGGTTGGAGTCAACGTTACAAA
TCAATATCCTACAACATGTCTGCTCGATCATAGAATAACCCATGGACGAG
AAATTTTCGTTGCTCAGTTTCTTGTAGAGTTTGAGCGGTTGTATAATACT
TATCGTGAGCATGGATTTGATGGTGAGCTAAGAAATATGTATCTTGATGC
ATGGATGCATAGCGGACAGCAGCTGGCAATTGGTGGACCGCATGGTGCTC
GGGCTGTAGTGCACGGATTGGCTCCCAACGGTTGGGTACGAGTTTTGAGA
GAAGACAACAATTCTTTTGAAGATCTGCCACCAGAAAGCACAAGCCTTGA
TATGAAGAATTCCATTTTGAAGGAAAAGGATGTCGGTCCGCGATAA
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protein sequence of Gcaud3364.t1

>Gcaud3364.t1 ID=Gcaud3364.t1|Name=Gcaud3364.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=332bp
MEAAEELRIHCTTPQAHDQLMRRHASDLLCLTLSHNVKLFSPEETLETAS
QLLHDDPHSKSEPYSEQKQLDMAVVQRYLETDWCGHMLVALPQTATTQNV
LLRLMPWCNFGSVAVTGFQTKGRGRRGAIWKSPIGSVAISVKVIVPSAKP
ETLTFLQFIAALAVVEAAKRNWNVPLRIKWPNDIYKHGDKLGGVLCEGAL
RNNQFEVIVGVGVNVTNQYPTTCLLDHRITHGREIFVAQFLVEFERLYNT
YREHGFDGELRNMYLDAWMHSGQQLAIGGPHGARAVVHGLAPNGWVRVLR
EDNNSFEDLPPESTSLDMKNSILKEKDVGPR*
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mRNA from alignment at NODE_179_length_39915_cov_4.496535:19356..20351+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3364.t1 ID=Gcaud3364.t1|Name=Gcaud3364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=996bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:19356..20351+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCAGCAGAAGAGCTCAGGATCCACTGTACCACCCCTCAAGCGCA
TGATCAACTGATGCGACGTCATGCCAGTGATCTCCTTTGTCTCACACTAT
CTCACAACGTAAAGCTATTTTCCCCGGAAGAGACGCTGGAAACTGCCTCT
CAATTGCTTCATGACGATCCTCATTCTAAAAGCGAGCCTTATTCAGAACA
AAAGCAGTTGGATATGGCTGTTGTGCAACGCTACCTGGAAACGGACTGGT
GCGGCCATATGTTGGTTGCCCTTCCGCAAACTGCAACCACCCAAAATGTT
CTTCTCCGGCTGATGCCGTGGTGCAACTTCGGCAGCGTGGCAGTTACTGG
TTTCCAAACCAAGGGAAGAGGCCGTCGTGGAGCGATATGGAAGTCTCCGA
TCGGCAGTGTCGCCATTTCCGTCAAAGTCATCGTTCCGAGTGCTAAACCC
GAAACGCTAACCTTTCTCCAATTCATTGCCGCTTTGGCTGTCGTGGAAGC
CGCGAAACGAAATTGGAATGTGCCGTTGCGTATCAAATGGCCTAATGATA
TATATAAACATGGTGATAAACTAGGTGGTGTCCTTTGCGAGGGAGCACTT
CGTAACAATCAGTTTGAAGTGATCGTCGGGGTTGGAGTCAACGTTACAAA
TCAATATCCTACAACATGTCTGCTCGATCATAGAATAACCCATGGACGAG
AAATTTTCGTTGCTCAGTTTCTTGTAGAGTTTGAGCGGTTGTATAATACT
TATCGTGAGCATGGATTTGATGGTGAGCTAAGAAATATGTATCTTGATGC
ATGGATGCATAGCGGACAGCAGCTGGCAATTGGTGGACCGCATGGTGCTC
GGGCTGTAGTGCACGGATTGGCTCCCAACGGTTGGGTACGAGTTTTGAGA
GAAGACAACAATTCTTTTGAAGATCTGCCACCAGAAAGCACAAGCCTTGA
TATGAAGAATTCCATTTTGAAGGAAAAGGATGTCGGTCCGCGATAA
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Coding sequence (CDS) from alignment at NODE_179_length_39915_cov_4.496535:19356..20351+

>Gcaud3364.t1 ID=Gcaud3364.t1|Name=Gcaud3364.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=996bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:19356..20351+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCAGCAGAAGAGCTCAGGATCCACTGTACCACCCCTCAAGCGCA
TGATCAACTGATGCGACGTCATGCCAGTGATCTCCTTTGTCTCACACTAT
CTCACAACGTAAAGCTATTTTCCCCGGAAGAGACGCTGGAAACTGCCTCT
CAATTGCTTCATGACGATCCTCATTCTAAAAGCGAGCCTTATTCAGAACA
AAAGCAGTTGGATATGGCTGTTGTGCAACGCTACCTGGAAACGGACTGGT
GCGGCCATATGTTGGTTGCCCTTCCGCAAACTGCAACCACCCAAAATGTT
CTTCTCCGGCTGATGCCGTGGTGCAACTTCGGCAGCGTGGCAGTTACTGG
TTTCCAAACCAAGGGAAGAGGCCGTCGTGGAGCGATATGGAAGTCTCCGA
TCGGCAGTGTCGCCATTTCCGTCAAAGTCATCGTTCCGAGTGCTAAACCC
GAAACGCTAACCTTTCTCCAATTCATTGCCGCTTTGGCTGTCGTGGAAGC
CGCGAAACGAAATTGGAATGTGCCGTTGCGTATCAAATGGCCTAATGATA
TATATAAACATGGTGATAAACTAGGTGGTGTCCTTTGCGAGGGAGCACTT
CGTAACAATCAGTTTGAAGTGATCGTCGGGGTTGGAGTCAACGTTACAAA
TCAATATCCTACAACATGTCTGCTCGATCATAGAATAACCCATGGACGAG
AAATTTTCGTTGCTCAGTTTCTTGTAGAGTTTGAGCGGTTGTATAATACT
TATCGTGAGCATGGATTTGATGGTGAGCTAAGAAATATGTATCTTGATGC
ATGGATGCATAGCGGACAGCAGCTGGCAATTGGTGGACCGCATGGTGCTC
GGGCTGTAGTGCACGGATTGGCTCCCAACGGTTGGGTACGAGTTTTGAGA
GAAGACAACAATTCTTTTGAAGATCTGCCACCAGAAAGCACAAGCCTTGA
TATGAAGAATTCCATTTTGAAGGAAAAGGATGTCGGTCCGCGATAA
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