Gcaud3359.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3359.t1
Unique Name	Gcaud3359.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	322

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_179_length_39915_cov_4.496535	contig	NODE_179_length_39915_cov_4.496535:8712..9677 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705360.1
PFAMs	PseudoU_synth_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06173
Evalue	1.73e-76
EggNOG OGs	COG0101@1\|root,KOG4393@2759\|Eukaryota
EC	5.4.99.12
Description	pseudouridine synthase activity
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3359	Gcaud3359	Gracilaria caudata M_176_S67 male	gene	NODE_179_length_39915_cov_4.496535 8712..9677 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3359.t1.start1	Gcaud3359.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_179_length_39915_cov_4.496535 8712..8714 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3359.t1.CDS1	Gcaud3359.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_179_length_39915_cov_4.496535 8712..9677 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3359.t1.exon1	Gcaud3359.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_179_length_39915_cov_4.496535 8712..9677 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3359.t1.stop1	Gcaud3359.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_179_length_39915_cov_4.496535 9675..9677 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3359.t1	Gcaud3359.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_179_length_39915_cov_4.496535 8712..9677 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_179_length_39915_cov_4.496535:8712..9677+
coding sequence from alignment at NODE_179_length_39915_cov_4.496535:8712..9677+

mRNA sequence

>Gcaud3359.t1 ID=Gcaud3359.t1|Name=Gcaud3359.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=322bp
MRSFLFFSTCPPCLSIPPPSTNNTTCEDNSRKRFRARVAYDGTHFNGWQF
QYEVRSIQGELEKAIERKVGKLIRVVGASRTDSGVHARGQALHFDIPDEL
ASREAEDMQKFQFTLNQILPKDVRLTNLELAPMVKHNAIPMFKQASSITS
QDVKLRPWHSIFCSTGKLYTYRFSIAKYLDPMQRLYRYHEWRAARFGFSE
HTLREATKKFVGSHDFSAFTNASSPPPGITAPVRVNPVRTIWSADVIHEG
DDMYRVEFRINGALYRMIRNIMGTIFAVSCGQLELSDIDRFFESRDRRIT
PKSAPAHGLCLERVFYDDWDA*

spliced messenger RNA

>Gcaud3359.t1 ID=Gcaud3359.t1|Name=Gcaud3359.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=966bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:8712..9677+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTCTTTTCTTTTCTTTTCCACTTGCCCACCATGTCTTTCGATTCC
GCCCCCGTCGACGAATAATACGACATGCGAAGACAACTCGAGAAAGCGTT
TTCGCGCTCGCGTCGCATACGATGGGACACATTTCAATGGATGGCAGTTC
CAATACGAAGTCCGCTCGATACAAGGAGAACTGGAGAAAGCCATCGAGCG
AAAAGTTGGAAAGTTGATACGGGTGGTTGGGGCAAGCAGAACCGATAGTG
GGGTACACGCAAGAGGACAAGCTTTACATTTTGATATTCCTGACGAACTA
GCATCTAGGGAAGCCGAAGACATGCAGAAGTTCCAATTTACTTTAAACCA
AATTCTGCCGAAGGACGTCAGACTCACGAATTTGGAGCTGGCTCCGATGG
TGAAGCACAACGCAATACCCATGTTTAAGCAAGCCTCGTCAATCACATCT
CAGGATGTAAAGCTTCGCCCTTGGCATTCTATCTTTTGCTCCACTGGAAA
GCTATACACATACCGATTTTCTATTGCTAAGTACCTGGATCCGATGCAAC
GATTGTACAGATATCATGAATGGCGAGCGGCAAGATTCGGATTTTCTGAG
CATACACTACGCGAAGCAACGAAGAAATTTGTGGGATCTCATGACTTTTC
AGCGTTTACGAATGCAAGTAGCCCACCACCAGGAATCACTGCTCCAGTAC
GGGTGAATCCCGTTCGGACAATTTGGTCAGCAGATGTGATTCACGAAGGG
GATGACATGTATCGAGTTGAGTTCAGAATAAATGGCGCCTTATACAGGAT
GATTCGAAACATCATGGGAACAATTTTCGCAGTTAGCTGTGGTCAGCTGG
AACTGTCTGATATCGATAGGTTTTTCGAATCACGAGATAGAAGGATCACT
CCGAAGAGTGCTCCGGCCCATGGGCTATGTCTTGAACGTGTGTTTTACGA
TGACTGGGATGCGTAG

protein sequence of Gcaud3359.t1

>Gcaud3359.t1 ID=Gcaud3359.t1|Name=Gcaud3359.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=322bp
MRSFLFFSTCPPCLSIPPPSTNNTTCEDNSRKRFRARVAYDGTHFNGWQF
QYEVRSIQGELEKAIERKVGKLIRVVGASRTDSGVHARGQALHFDIPDEL
ASREAEDMQKFQFTLNQILPKDVRLTNLELAPMVKHNAIPMFKQASSITS
QDVKLRPWHSIFCSTGKLYTYRFSIAKYLDPMQRLYRYHEWRAARFGFSE
HTLREATKKFVGSHDFSAFTNASSPPPGITAPVRVNPVRTIWSADVIHEG
DDMYRVEFRINGALYRMIRNIMGTIFAVSCGQLELSDIDRFFESRDRRIT
PKSAPAHGLCLERVFYDDWDA*

mRNA from alignment at NODE_179_length_39915_cov_4.496535:8712..9677+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3359.t1 ID=Gcaud3359.t1|Name=Gcaud3359.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=966bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:8712..9677+ (Gracilaria caudata M_176_S67 male)
ATGAGGTCTTTTCTTTTCTTTTCCACTTGCCCACCATGTCTTTCGATTCC
GCCCCCGTCGACGAATAATACGACATGCGAAGACAACTCGAGAAAGCGTT
TTCGCGCTCGCGTCGCATACGATGGGACACATTTCAATGGATGGCAGTTC
CAATACGAAGTCCGCTCGATACAAGGAGAACTGGAGAAAGCCATCGAGCG
AAAAGTTGGAAAGTTGATACGGGTGGTTGGGGCAAGCAGAACCGATAGTG
GGGTACACGCAAGAGGACAAGCTTTACATTTTGATATTCCTGACGAACTA
GCATCTAGGGAAGCCGAAGACATGCAGAAGTTCCAATTTACTTTAAACCA
AATTCTGCCGAAGGACGTCAGACTCACGAATTTGGAGCTGGCTCCGATGG
TGAAGCACAACGCAATACCCATGTTTAAGCAAGCCTCGTCAATCACATCT
CAGGATGTAAAGCTTCGCCCTTGGCATTCTATCTTTTGCTCCACTGGAAA
GCTATACACATACCGATTTTCTATTGCTAAGTACCTGGATCCGATGCAAC
GATTGTACAGATATCATGAATGGCGAGCGGCAAGATTCGGATTTTCTGAG
CATACACTACGCGAAGCAACGAAGAAATTTGTGGGATCTCATGACTTTTC
AGCGTTTACGAATGCAAGTAGCCCACCACCAGGAATCACTGCTCCAGTAC
GGGTGAATCCCGTTCGGACAATTTGGTCAGCAGATGTGATTCACGAAGGG
GATGACATGTATCGAGTTGAGTTCAGAATAAATGGCGCCTTATACAGGAT
GATTCGAAACATCATGGGAACAATTTTCGCAGTTAGCTGTGGTCAGCTGG
AACTGTCTGATATCGATAGGTTTTTCGAATCACGAGATAGAAGGATCACT
CCGAAGAGTGCTCCGGCCCATGGGCTATGTCTTGAACGTGTGTTTTACGA
TGACTGGGATGCGTAG

Coding sequence (CDS) from alignment at NODE_179_length_39915_cov_4.496535:8712..9677+

>Gcaud3359.t1 ID=Gcaud3359.t1|Name=Gcaud3359.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=966bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:8712..9677+ (Gracilaria caudata M_176_S67 male)
ATGAGGTCTTTTCTTTTCTTTTCCACTTGCCCACCATGTCTTTCGATTCC
GCCCCCGTCGACGAATAATACGACATGCGAAGACAACTCGAGAAAGCGTT
TTCGCGCTCGCGTCGCATACGATGGGACACATTTCAATGGATGGCAGTTC
CAATACGAAGTCCGCTCGATACAAGGAGAACTGGAGAAAGCCATCGAGCG
AAAAGTTGGAAAGTTGATACGGGTGGTTGGGGCAAGCAGAACCGATAGTG
GGGTACACGCAAGAGGACAAGCTTTACATTTTGATATTCCTGACGAACTA
GCATCTAGGGAAGCCGAAGACATGCAGAAGTTCCAATTTACTTTAAACCA
AATTCTGCCGAAGGACGTCAGACTCACGAATTTGGAGCTGGCTCCGATGG
TGAAGCACAACGCAATACCCATGTTTAAGCAAGCCTCGTCAATCACATCT
CAGGATGTAAAGCTTCGCCCTTGGCATTCTATCTTTTGCTCCACTGGAAA
GCTATACACATACCGATTTTCTATTGCTAAGTACCTGGATCCGATGCAAC
GATTGTACAGATATCATGAATGGCGAGCGGCAAGATTCGGATTTTCTGAG
CATACACTACGCGAAGCAACGAAGAAATTTGTGGGATCTCATGACTTTTC
AGCGTTTACGAATGCAAGTAGCCCACCACCAGGAATCACTGCTCCAGTAC
GGGTGAATCCCGTTCGGACAATTTGGTCAGCAGATGTGATTCACGAAGGG
GATGACATGTATCGAGTTGAGTTCAGAATAAATGGCGCCTTATACAGGAT
GATTCGAAACATCATGGGAACAATTTTCGCAGTTAGCTGTGGTCAGCTGG
AACTGTCTGATATCGATAGGTTTTTCGAATCACGAGATAGAAGGATCACT
CCGAAGAGTGCTCCGGCCCATGGGCTATGTCTTGAACGTGTGTTTTACGA
TGACTGGGATGCGTAG