Gcaud3348.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3348.t1
Unique Name	Gcaud3348.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	308

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_320_length_30264_cov_4.539025	contig	NODE_320_length_30264_cov_4.539025:27560..28483 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708324.1
PFAMs	Branch
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG Reaction	R05925,R06189
KEGG Pathway	ko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG Module	M00057
GOs	GO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue	4.38e-32
EggNOG OGs	KOG0799@1\|root,KOG0799@2759\|Eukaryota
EC	2.4.1.150,2.4.2.26
Description	acetylglucosaminyltransferase activity
COG category	O
CAZy	GT14
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3348	Gcaud3348	Gracilaria caudata M_176_S67 male	gene	NODE_320_length_30264_cov_4.539025 27560..28483 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3348.t1.start1	Gcaud3348.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_320_length_30264_cov_4.539025 27560..27562 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3348.t1.CDS1	Gcaud3348.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_320_length_30264_cov_4.539025 27560..28483 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3348.t1.exon1	Gcaud3348.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_320_length_30264_cov_4.539025 27560..28483 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3348.t1.stop1	Gcaud3348.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_320_length_30264_cov_4.539025 28481..28483 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3348.t1	Gcaud3348.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_320_length_30264_cov_4.539025 27560..28483 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_320_length_30264_cov_4.539025:27560..28483+
coding sequence from alignment at NODE_320_length_30264_cov_4.539025:27560..28483+

mRNA sequence

>Gcaud3348.t1 ID=Gcaud3348.t1|Name=Gcaud3348.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=308bp
MSTVQTHFDNNEYRNVFILPSEPIAYAGVSMLLNTLNAISSALEHKWDFF
INLSGSDYPVLSPDTIRRLLGNPAVLKERLNFLQSQEADKDREWFINRRL
RSLYLDTTLHTTSTKQDGVLISLNATNPVDFTGVPFVKSEAWVILHRSFC
IHAVSSASGRRLLLSYAMARAADELFFGTLLSQSKEFRPTMTWDSFRFIQ
WGLHGTKWSRPGYLDELDGEIRNELAASGAFFARKFRDSESPLLDFIDSH
LNGITELDYRRNDSSVTQFTSMAERRLRCAATFRSATNNCNRGWLRNDDP
VQNRDLD*

spliced messenger RNA

>Gcaud3348.t1 ID=Gcaud3348.t1|Name=Gcaud3348.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=924bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:27560..28483+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACAGTCCAAACTCACTTTGATAATAATGAATATCGAAACGTCTT
CATTCTACCTTCGGAACCGATCGCATATGCTGGAGTCTCAATGCTTCTCA
ACACGCTGAACGCTATTTCGTCTGCACTTGAACACAAGTGGGATTTCTTT
ATTAATCTCTCAGGCTCCGATTATCCTGTTCTCAGCCCTGACACCATCAG
AAGATTGCTCGGGAATCCAGCTGTCCTCAAGGAGAGATTGAACTTTTTGC
AATCACAAGAAGCCGATAAAGATCGCGAATGGTTTATAAACAGGAGACTC
CGTAGCTTGTACTTGGATACCACCTTGCACACTACTTCTACGAAACAAGA
TGGTGTTCTCATTAGTTTGAACGCTACAAACCCCGTTGACTTTACTGGTG
TTCCGTTCGTTAAGTCCGAGGCATGGGTCATTCTGCACAGATCCTTTTGC
ATTCACGCCGTCTCTTCCGCTTCTGGACGCCGTCTGCTTCTATCTTATGC
GATGGCACGCGCAGCAGATGAGCTTTTCTTTGGAACCTTACTTTCGCAAT
CGAAAGAATTTCGACCAACCATGACATGGGATTCGTTTCGATTCATTCAA
TGGGGTCTGCATGGAACTAAATGGTCTCGTCCGGGGTATCTCGACGAGCT
GGATGGGGAGATCAGGAACGAATTAGCAGCTAGTGGTGCTTTTTTCGCAA
GAAAGTTTCGAGACTCGGAAAGTCCGTTACTGGACTTCATTGACAGCCAT
CTAAACGGCATAACTGAGTTAGACTACCGAAGGAATGATTCGAGTGTGAC
GCAGTTCACTTCCATGGCTGAGAGGCGATTGCGGTGTGCTGCTACATTTC
GATCAGCGACAAATAACTGTAATCGAGGATGGTTAAGAAATGACGATCCA
GTGCAAAACCGAGACCTGGATTAA

protein sequence of Gcaud3348.t1

>Gcaud3348.t1 ID=Gcaud3348.t1|Name=Gcaud3348.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=308bp
MSTVQTHFDNNEYRNVFILPSEPIAYAGVSMLLNTLNAISSALEHKWDFF
INLSGSDYPVLSPDTIRRLLGNPAVLKERLNFLQSQEADKDREWFINRRL
RSLYLDTTLHTTSTKQDGVLISLNATNPVDFTGVPFVKSEAWVILHRSFC
IHAVSSASGRRLLLSYAMARAADELFFGTLLSQSKEFRPTMTWDSFRFIQ
WGLHGTKWSRPGYLDELDGEIRNELAASGAFFARKFRDSESPLLDFIDSH
LNGITELDYRRNDSSVTQFTSMAERRLRCAATFRSATNNCNRGWLRNDDP
VQNRDLD*

mRNA from alignment at NODE_320_length_30264_cov_4.539025:27560..28483+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3348.t1 ID=Gcaud3348.t1|Name=Gcaud3348.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=924bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:27560..28483+ (Gracilaria caudata M_176_S67 male)
ATGTCAACAGTCCAAACTCACTTTGATAATAATGAATATCGAAACGTCTT
CATTCTACCTTCGGAACCGATCGCATATGCTGGAGTCTCAATGCTTCTCA
ACACGCTGAACGCTATTTCGTCTGCACTTGAACACAAGTGGGATTTCTTT
ATTAATCTCTCAGGCTCCGATTATCCTGTTCTCAGCCCTGACACCATCAG
AAGATTGCTCGGGAATCCAGCTGTCCTCAAGGAGAGATTGAACTTTTTGC
AATCACAAGAAGCCGATAAAGATCGCGAATGGTTTATAAACAGGAGACTC
CGTAGCTTGTACTTGGATACCACCTTGCACACTACTTCTACGAAACAAGA
TGGTGTTCTCATTAGTTTGAACGCTACAAACCCCGTTGACTTTACTGGTG
TTCCGTTCGTTAAGTCCGAGGCATGGGTCATTCTGCACAGATCCTTTTGC
ATTCACGCCGTCTCTTCCGCTTCTGGACGCCGTCTGCTTCTATCTTATGC
GATGGCACGCGCAGCAGATGAGCTTTTCTTTGGAACCTTACTTTCGCAAT
CGAAAGAATTTCGACCAACCATGACATGGGATTCGTTTCGATTCATTCAA
TGGGGTCTGCATGGAACTAAATGGTCTCGTCCGGGGTATCTCGACGAGCT
GGATGGGGAGATCAGGAACGAATTAGCAGCTAGTGGTGCTTTTTTCGCAA
GAAAGTTTCGAGACTCGGAAAGTCCGTTACTGGACTTCATTGACAGCCAT
CTAAACGGCATAACTGAGTTAGACTACCGAAGGAATGATTCGAGTGTGAC
GCAGTTCACTTCCATGGCTGAGAGGCGATTGCGGTGTGCTGCTACATTTC
GATCAGCGACAAATAACTGTAATCGAGGATGGTTAAGAAATGACGATCCA
GTGCAAAACCGAGACCTGGATTAA

Coding sequence (CDS) from alignment at NODE_320_length_30264_cov_4.539025:27560..28483+

>Gcaud3348.t1 ID=Gcaud3348.t1|Name=Gcaud3348.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=924bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:27560..28483+ (Gracilaria caudata M_176_S67 male)
ATGTCAACAGTCCAAACTCACTTTGATAATAATGAATATCGAAACGTCTT
CATTCTACCTTCGGAACCGATCGCATATGCTGGAGTCTCAATGCTTCTCA
ACACGCTGAACGCTATTTCGTCTGCACTTGAACACAAGTGGGATTTCTTT
ATTAATCTCTCAGGCTCCGATTATCCTGTTCTCAGCCCTGACACCATCAG
AAGATTGCTCGGGAATCCAGCTGTCCTCAAGGAGAGATTGAACTTTTTGC
AATCACAAGAAGCCGATAAAGATCGCGAATGGTTTATAAACAGGAGACTC
CGTAGCTTGTACTTGGATACCACCTTGCACACTACTTCTACGAAACAAGA
TGGTGTTCTCATTAGTTTGAACGCTACAAACCCCGTTGACTTTACTGGTG
TTCCGTTCGTTAAGTCCGAGGCATGGGTCATTCTGCACAGATCCTTTTGC
ATTCACGCCGTCTCTTCCGCTTCTGGACGCCGTCTGCTTCTATCTTATGC
GATGGCACGCGCAGCAGATGAGCTTTTCTTTGGAACCTTACTTTCGCAAT
CGAAAGAATTTCGACCAACCATGACATGGGATTCGTTTCGATTCATTCAA
TGGGGTCTGCATGGAACTAAATGGTCTCGTCCGGGGTATCTCGACGAGCT
GGATGGGGAGATCAGGAACGAATTAGCAGCTAGTGGTGCTTTTTTCGCAA
GAAAGTTTCGAGACTCGGAAAGTCCGTTACTGGACTTCATTGACAGCCAT
CTAAACGGCATAACTGAGTTAGACTACCGAAGGAATGATTCGAGTGTGAC
GCAGTTCACTTCCATGGCTGAGAGGCGATTGCGGTGTGCTGCTACATTTC
GATCAGCGACAAATAACTGTAATCGAGGATGGTTAAGAAATGACGATCCA
GTGCAAAACCGAGACCTGGATTAA