Gcaud3344.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3344.t1
Unique Name	Gcaud3344.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	340

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_320_length_30264_cov_4.539025	contig	NODE_320_length_30264_cov_4.539025:19632..20651 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	85681.XP_006435185.1
Max annot lvl	35493\|Streptophyta
Evalue	0.000147
EggNOG OGs	2A5Q9@1\|root,2RYA3@2759\|Eukaryota,37U97@33090\|Viridiplantae,3GIZ3@35493\|Streptophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3344	Gcaud3344	Gracilaria caudata M_176_S67 male	gene	NODE_320_length_30264_cov_4.539025 19632..20651 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3344.t1.stop1	Gcaud3344.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_320_length_30264_cov_4.539025 19632..19634 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3344.t1.CDS1	Gcaud3344.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_320_length_30264_cov_4.539025 19632..20651 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3344.t1.exon1	Gcaud3344.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_320_length_30264_cov_4.539025 19632..20651 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3344.t1.start1	Gcaud3344.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_320_length_30264_cov_4.539025 20649..20651 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3344.t1	Gcaud3344.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_320_length_30264_cov_4.539025 19632..20651 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_320_length_30264_cov_4.539025:19632..20651-
coding sequence from alignment at NODE_320_length_30264_cov_4.539025:19632..20651-

mRNA sequence

>Gcaud3344.t1 ID=Gcaud3344.t1|Name=Gcaud3344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=340bp
MEDSDGDEVPLDQVQNHLFQGAESGYDSENTAHDDGRMASNNSEAYEDDD
SLGGVDDDQRPGNENVSDEDNDEDEDEDEQEVEEEEIEEEEVEEDGEEAE
EAVEMVDVAEDEDIELEKEELGTNKMVSQQDGHELRVEGNQADGYGDGDG
DDDEDDIPLAARMNTVTPPSPKMQRLRFFKNADDDDVPLATLYKRHKPKR
KYRAKASSSRATSSRATSSRATSSRATSSRAASSRASSSRASSSRARSGR
VSKREPKPRARSTQRKKEKEESVRKFEKIGQRRETPLDNDPLRLFYQSMY
KEKLSKGKHSYVAENWCLRHGIFEEDTAKDIISRWQLAR*

spliced messenger RNA

>Gcaud3344.t1 ID=Gcaud3344.t1|Name=Gcaud3344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:19632..20651- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACTCTGATGGTGACGAAGTCCCCCTGGATCAAGTGCAGAATCA
TTTATTTCAAGGAGCTGAGTCGGGGTACGACTCAGAAAACACTGCCCATG
ATGATGGGCGCATGGCTTCCAACAATTCCGAAGCATATGAAGACGATGAC
TCACTAGGGGGAGTAGACGATGATCAAAGACCGGGAAACGAAAACGTGTC
TGACGAAGATAATGATGAAGACGAGGACGAAGACGAGCAAGAAGTAGAGG
AAGAGGAGATAGAAGAGGAAGAAGTGGAGGAAGATGGAGAGGAGGCGGAG
GAAGCGGTGGAGATGGTCGATGTTGCGGAGGACGAAGACATAGAGCTAGA
AAAGGAGGAATTGGGCACTAACAAAATGGTATCACAGCAAGATGGACATG
AACTCCGGGTCGAAGGCAATCAGGCGGACGGCTACGGCGATGGCGATGGC
GATGACGATGAAGACGACATACCACTCGCAGCACGCATGAACACTGTCAC
ACCACCGTCGCCTAAGATGCAGAGACTACGGTTCTTCAAAAATGCTGACG
ATGACGATGTGCCACTTGCTACGCTGTACAAACGCCACAAGCCTAAGCGA
AAGTATCGTGCCAAAGCCTCCTCTTCGAGAGCCACCTCCTCTAGGGCCAC
CTCCTCTAGAGCCACCTCCTCAAGAGCCACCTCCTCCAGAGCCGCCTCCT
CCAGGGCAAGCTCCTCTAGAGCAAGCTCCTCTAGAGCACGGAGTGGAAGA
GTGTCAAAGAGAGAGCCAAAACCAAGAGCCAGGTCGACGCAACGAAAGAA
GGAAAAAGAAGAGTCGGTTCGCAAGTTTGAGAAGATTGGACAAAGGCGAG
AAACGCCACTGGATAACGATCCCTTGCGGTTGTTTTATCAAAGCATGTAC
AAAGAGAAACTATCTAAGGGCAAGCACTCTTACGTTGCTGAGAATTGGTG
CTTGCGACATGGAATTTTTGAAGAAGATACAGCGAAGGACATCATCTCAC
GTTGGCAACTAGCTCGATAG

protein sequence of Gcaud3344.t1

>Gcaud3344.t1 ID=Gcaud3344.t1|Name=Gcaud3344.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=340bp
MEDSDGDEVPLDQVQNHLFQGAESGYDSENTAHDDGRMASNNSEAYEDDD
SLGGVDDDQRPGNENVSDEDNDEDEDEDEQEVEEEEIEEEEVEEDGEEAE
EAVEMVDVAEDEDIELEKEELGTNKMVSQQDGHELRVEGNQADGYGDGDG
DDDEDDIPLAARMNTVTPPSPKMQRLRFFKNADDDDVPLATLYKRHKPKR
KYRAKASSSRATSSRATSSRATSSRATSSRAASSRASSSRASSSRARSGR
VSKREPKPRARSTQRKKEKEESVRKFEKIGQRRETPLDNDPLRLFYQSMY
KEKLSKGKHSYVAENWCLRHGIFEEDTAKDIISRWQLAR*

mRNA from alignment at NODE_320_length_30264_cov_4.539025:19632..20651-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3344.t1 ID=Gcaud3344.t1|Name=Gcaud3344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:19632..20651- (Gracilaria caudata M_176_S67 male)
ATGGAAGACTCTGATGGTGACGAAGTCCCCCTGGATCAAGTGCAGAATCA
TTTATTTCAAGGAGCTGAGTCGGGGTACGACTCAGAAAACACTGCCCATG
ATGATGGGCGCATGGCTTCCAACAATTCCGAAGCATATGAAGACGATGAC
TCACTAGGGGGAGTAGACGATGATCAAAGACCGGGAAACGAAAACGTGTC
TGACGAAGATAATGATGAAGACGAGGACGAAGACGAGCAAGAAGTAGAGG
AAGAGGAGATAGAAGAGGAAGAAGTGGAGGAAGATGGAGAGGAGGCGGAG
GAAGCGGTGGAGATGGTCGATGTTGCGGAGGACGAAGACATAGAGCTAGA
AAAGGAGGAATTGGGCACTAACAAAATGGTATCACAGCAAGATGGACATG
AACTCCGGGTCGAAGGCAATCAGGCGGACGGCTACGGCGATGGCGATGGC
GATGACGATGAAGACGACATACCACTCGCAGCACGCATGAACACTGTCAC
ACCACCGTCGCCTAAGATGCAGAGACTACGGTTCTTCAAAAATGCTGACG
ATGACGATGTGCCACTTGCTACGCTGTACAAACGCCACAAGCCTAAGCGA
AAGTATCGTGCCAAAGCCTCCTCTTCGAGAGCCACCTCCTCTAGGGCCAC
CTCCTCTAGAGCCACCTCCTCAAGAGCCACCTCCTCCAGAGCCGCCTCCT
CCAGGGCAAGCTCCTCTAGAGCAAGCTCCTCTAGAGCACGGAGTGGAAGA
GTGTCAAAGAGAGAGCCAAAACCAAGAGCCAGGTCGACGCAACGAAAGAA
GGAAAAAGAAGAGTCGGTTCGCAAGTTTGAGAAGATTGGACAAAGGCGAG
AAACGCCACTGGATAACGATCCCTTGCGGTTGTTTTATCAAAGCATGTAC
AAAGAGAAACTATCTAAGGGCAAGCACTCTTACGTTGCTGAGAATTGGTG
CTTGCGACATGGAATTTTTGAAGAAGATACAGCGAAGGACATCATCTCAC
GTTGGCAACTAGCTCGATAG

Coding sequence (CDS) from alignment at NODE_320_length_30264_cov_4.539025:19632..20651-

>Gcaud3344.t1 ID=Gcaud3344.t1|Name=Gcaud3344.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1020bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:19632..20651- (Gracilaria caudata M_176_S67 male)
ATGGAAGACTCTGATGGTGACGAAGTCCCCCTGGATCAAGTGCAGAATCA
TTTATTTCAAGGAGCTGAGTCGGGGTACGACTCAGAAAACACTGCCCATG
ATGATGGGCGCATGGCTTCCAACAATTCCGAAGCATATGAAGACGATGAC
TCACTAGGGGGAGTAGACGATGATCAAAGACCGGGAAACGAAAACGTGTC
TGACGAAGATAATGATGAAGACGAGGACGAAGACGAGCAAGAAGTAGAGG
AAGAGGAGATAGAAGAGGAAGAAGTGGAGGAAGATGGAGAGGAGGCGGAG
GAAGCGGTGGAGATGGTCGATGTTGCGGAGGACGAAGACATAGAGCTAGA
AAAGGAGGAATTGGGCACTAACAAAATGGTATCACAGCAAGATGGACATG
AACTCCGGGTCGAAGGCAATCAGGCGGACGGCTACGGCGATGGCGATGGC
GATGACGATGAAGACGACATACCACTCGCAGCACGCATGAACACTGTCAC
ACCACCGTCGCCTAAGATGCAGAGACTACGGTTCTTCAAAAATGCTGACG
ATGACGATGTGCCACTTGCTACGCTGTACAAACGCCACAAGCCTAAGCGA
AAGTATCGTGCCAAAGCCTCCTCTTCGAGAGCCACCTCCTCTAGGGCCAC
CTCCTCTAGAGCCACCTCCTCAAGAGCCACCTCCTCCAGAGCCGCCTCCT
CCAGGGCAAGCTCCTCTAGAGCAAGCTCCTCTAGAGCACGGAGTGGAAGA
GTGTCAAAGAGAGAGCCAAAACCAAGAGCCAGGTCGACGCAACGAAAGAA
GGAAAAAGAAGAGTCGGTTCGCAAGTTTGAGAAGATTGGACAAAGGCGAG
AAACGCCACTGGATAACGATCCCTTGCGGTTGTTTTATCAAAGCATGTAC
AAAGAGAAACTATCTAAGGGCAAGCACTCTTACGTTGCTGAGAATTGGTG
CTTGCGACATGGAATTTTTGAAGAAGATACAGCGAAGGACATCATCTCAC
GTTGGCAACTAGCTCGATAG