Gcaud3337.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3337.t1
Unique Name	Gcaud3337.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	405

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_320_length_30264_cov_4.539025	contig	NODE_320_length_30264_cov_4.539025:4673..5887 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	32049.SYNPCC7002_A0123
Preferred name	der
PFAMs	KH_dom-like,MMR_HSR1
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00031
KEGG ko	ko:K00058,ko:K03977
KEGG Reaction	R01513
KEGG Pathway	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG Module	M00020
Evalue	7.47e-166
EggNOG OGs	COG1160@1\|root,COG1160@2\|Bacteria,1G00M@1117\|Cyanobacteria,1GZ51@1129\|Synechococcus
EC	1.1.1.399,1.1.1.95
Description	GTPase that plays an essential role in the late steps of ribosome biogenesis
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000,ko03009,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3337	Gcaud3337	Gracilaria caudata M_176_S67 male	gene	NODE_320_length_30264_cov_4.539025 4673..5887 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3337.t1.start1	Gcaud3337.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_320_length_30264_cov_4.539025 4673..4675 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3337.t1.CDS1	Gcaud3337.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_320_length_30264_cov_4.539025 4673..5887 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3337.t1.exon1	Gcaud3337.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_320_length_30264_cov_4.539025 4673..5887 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3337.t1.stop1	Gcaud3337.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_320_length_30264_cov_4.539025 5885..5887 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3337.t1	Gcaud3337.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_320_length_30264_cov_4.539025 4673..5887 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_320_length_30264_cov_4.539025:4673..5887+
coding sequence from alignment at NODE_320_length_30264_cov_4.539025:4673..5887+

mRNA sequence

>Gcaud3337.t1 ID=Gcaud3337.t1|Name=Gcaud3337.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=405bp
MYRPTEWAGYHFRVVDTGGLVFDDQSSFLPEIRSQAMIAIEEAAAVILCV
DGQAGVNPLDLDLADFLRKSAPNVPVFVAVNKCESHHGSAMAIDFWELGL
GEPIPVSAIHGSGTGDLLDSVVEAIPKVDVAAEDDIINVAIVGRPNVGKS
SLLNLLTGVQRTIVSEIPGTTRDAIDEVITVHGKKYRLIDTAGIRRRTNV
SFGTEFFMINRAFKAIRRADVVLLMLDITESSEQDRKIADRIVDEGKACV
VLANKWDLVPEKDNRTYKSAKEAVQERTVSISWAPIELISVLEKKRVSKV
LSLVDDALEQHRRRVSTAVLNDVLRDAVEWHKPPSTRAAKQGRIYYCTQV
ASRPPTIAMFVNDPRLFHDNYRRYMAGQFRKALGFFGTPMRLLWRGKARA
PNLG*

spliced messenger RNA

>Gcaud3337.t1 ID=Gcaud3337.t1|Name=Gcaud3337.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:4673..5887+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCGTCCCACAGAGTGGGCTGGTTATCATTTTCGCGTGGTCGATAC
TGGAGGGCTTGTGTTTGATGACCAGTCCAGTTTTCTACCAGAGATTAGGT
CTCAGGCTATGATAGCTATCGAAGAAGCTGCTGCTGTTATTTTATGCGTT
GACGGTCAAGCGGGGGTGAACCCTCTCGACCTTGACCTAGCGGACTTCTT
GAGGAAGTCTGCGCCGAATGTTCCCGTATTTGTCGCCGTCAACAAATGTG
AGAGCCATCACGGTTCAGCTATGGCTATCGACTTTTGGGAGTTGGGCCTC
GGAGAACCGATTCCGGTTAGCGCTATACACGGCAGTGGTACTGGAGATCT
GCTTGATAGTGTCGTGGAAGCGATTCCGAAAGTTGACGTTGCGGCAGAAG
ACGATATTATCAACGTAGCCATTGTAGGACGGCCGAACGTAGGAAAGAGT
AGTCTGTTGAATTTGCTCACAGGGGTCCAGCGCACTATTGTCAGCGAAAT
TCCCGGTACCACACGAGATGCAATTGACGAGGTAATTACCGTGCATGGAA
AGAAATACCGTCTCATCGATACTGCAGGCATACGACGAAGGACGAATGTG
TCTTTTGGGACCGAATTCTTCATGATAAATCGAGCATTCAAGGCCATACG
GCGTGCAGACGTCGTGTTACTTATGCTGGACATTACAGAATCTTCAGAGC
AAGACAGGAAGATCGCTGACCGAATCGTTGATGAGGGAAAGGCGTGCGTT
GTGCTGGCTAATAAGTGGGATCTCGTACCAGAAAAGGACAATAGAACATA
CAAGAGTGCAAAGGAGGCTGTGCAGGAACGAACGGTGTCCATTTCGTGGG
CTCCCATTGAGCTTATTTCTGTTCTGGAGAAGAAGAGAGTAAGCAAAGTG
CTCTCGTTGGTAGATGACGCTTTAGAACAACATCGCAGGAGAGTGTCAAC
AGCTGTTCTAAACGACGTTTTGCGAGATGCAGTGGAGTGGCACAAGCCGC
CAAGTACCAGAGCGGCGAAGCAGGGACGTATATATTATTGTACACAGGTT
GCCAGTAGACCTCCGACTATTGCAATGTTTGTCAATGATCCGCGACTCTT
CCATGATAATTATCGAAGGTACATGGCGGGTCAGTTTAGGAAGGCGCTCG
GATTCTTTGGTACGCCGATGCGACTGCTCTGGAGAGGAAAAGCAAGGGCT
CCGAATCTTGGTTAG

protein sequence of Gcaud3337.t1

>Gcaud3337.t1 ID=Gcaud3337.t1|Name=Gcaud3337.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=405bp
MYRPTEWAGYHFRVVDTGGLVFDDQSSFLPEIRSQAMIAIEEAAAVILCV
DGQAGVNPLDLDLADFLRKSAPNVPVFVAVNKCESHHGSAMAIDFWELGL
GEPIPVSAIHGSGTGDLLDSVVEAIPKVDVAAEDDIINVAIVGRPNVGKS
SLLNLLTGVQRTIVSEIPGTTRDAIDEVITVHGKKYRLIDTAGIRRRTNV
SFGTEFFMINRAFKAIRRADVVLLMLDITESSEQDRKIADRIVDEGKACV
VLANKWDLVPEKDNRTYKSAKEAVQERTVSISWAPIELISVLEKKRVSKV
LSLVDDALEQHRRRVSTAVLNDVLRDAVEWHKPPSTRAAKQGRIYYCTQV
ASRPPTIAMFVNDPRLFHDNYRRYMAGQFRKALGFFGTPMRLLWRGKARA
PNLG*

mRNA from alignment at NODE_320_length_30264_cov_4.539025:4673..5887+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3337.t1 ID=Gcaud3337.t1|Name=Gcaud3337.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:4673..5887+ (Gracilaria caudata M_176_S67 male)
ATGTATCGTCCCACAGAGTGGGCTGGTTATCATTTTCGCGTGGTCGATAC
TGGAGGGCTTGTGTTTGATGACCAGTCCAGTTTTCTACCAGAGATTAGGT
CTCAGGCTATGATAGCTATCGAAGAAGCTGCTGCTGTTATTTTATGCGTT
GACGGTCAAGCGGGGGTGAACCCTCTCGACCTTGACCTAGCGGACTTCTT
GAGGAAGTCTGCGCCGAATGTTCCCGTATTTGTCGCCGTCAACAAATGTG
AGAGCCATCACGGTTCAGCTATGGCTATCGACTTTTGGGAGTTGGGCCTC
GGAGAACCGATTCCGGTTAGCGCTATACACGGCAGTGGTACTGGAGATCT
GCTTGATAGTGTCGTGGAAGCGATTCCGAAAGTTGACGTTGCGGCAGAAG
ACGATATTATCAACGTAGCCATTGTAGGACGGCCGAACGTAGGAAAGAGT
AGTCTGTTGAATTTGCTCACAGGGGTCCAGCGCACTATTGTCAGCGAAAT
TCCCGGTACCACACGAGATGCAATTGACGAGGTAATTACCGTGCATGGAA
AGAAATACCGTCTCATCGATACTGCAGGCATACGACGAAGGACGAATGTG
TCTTTTGGGACCGAATTCTTCATGATAAATCGAGCATTCAAGGCCATACG
GCGTGCAGACGTCGTGTTACTTATGCTGGACATTACAGAATCTTCAGAGC
AAGACAGGAAGATCGCTGACCGAATCGTTGATGAGGGAAAGGCGTGCGTT
GTGCTGGCTAATAAGTGGGATCTCGTACCAGAAAAGGACAATAGAACATA
CAAGAGTGCAAAGGAGGCTGTGCAGGAACGAACGGTGTCCATTTCGTGGG
CTCCCATTGAGCTTATTTCTGTTCTGGAGAAGAAGAGAGTAAGCAAAGTG
CTCTCGTTGGTAGATGACGCTTTAGAACAACATCGCAGGAGAGTGTCAAC
AGCTGTTCTAAACGACGTTTTGCGAGATGCAGTGGAGTGGCACAAGCCGC
CAAGTACCAGAGCGGCGAAGCAGGGACGTATATATTATTGTACACAGGTT
GCCAGTAGACCTCCGACTATTGCAATGTTTGTCAATGATCCGCGACTCTT
CCATGATAATTATCGAAGGTACATGGCGGGTCAGTTTAGGAAGGCGCTCG
GATTCTTTGGTACGCCGATGCGACTGCTCTGGAGAGGAAAAGCAAGGGCT
CCGAATCTTGGTTAG

Coding sequence (CDS) from alignment at NODE_320_length_30264_cov_4.539025:4673..5887+

>Gcaud3337.t1 ID=Gcaud3337.t1|Name=Gcaud3337.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1215bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:4673..5887+ (Gracilaria caudata M_176_S67 male)
ATGTATCGTCCCACAGAGTGGGCTGGTTATCATTTTCGCGTGGTCGATAC
TGGAGGGCTTGTGTTTGATGACCAGTCCAGTTTTCTACCAGAGATTAGGT
CTCAGGCTATGATAGCTATCGAAGAAGCTGCTGCTGTTATTTTATGCGTT
GACGGTCAAGCGGGGGTGAACCCTCTCGACCTTGACCTAGCGGACTTCTT
GAGGAAGTCTGCGCCGAATGTTCCCGTATTTGTCGCCGTCAACAAATGTG
AGAGCCATCACGGTTCAGCTATGGCTATCGACTTTTGGGAGTTGGGCCTC
GGAGAACCGATTCCGGTTAGCGCTATACACGGCAGTGGTACTGGAGATCT
GCTTGATAGTGTCGTGGAAGCGATTCCGAAAGTTGACGTTGCGGCAGAAG
ACGATATTATCAACGTAGCCATTGTAGGACGGCCGAACGTAGGAAAGAGT
AGTCTGTTGAATTTGCTCACAGGGGTCCAGCGCACTATTGTCAGCGAAAT
TCCCGGTACCACACGAGATGCAATTGACGAGGTAATTACCGTGCATGGAA
AGAAATACCGTCTCATCGATACTGCAGGCATACGACGAAGGACGAATGTG
TCTTTTGGGACCGAATTCTTCATGATAAATCGAGCATTCAAGGCCATACG
GCGTGCAGACGTCGTGTTACTTATGCTGGACATTACAGAATCTTCAGAGC
AAGACAGGAAGATCGCTGACCGAATCGTTGATGAGGGAAAGGCGTGCGTT
GTGCTGGCTAATAAGTGGGATCTCGTACCAGAAAAGGACAATAGAACATA
CAAGAGTGCAAAGGAGGCTGTGCAGGAACGAACGGTGTCCATTTCGTGGG
CTCCCATTGAGCTTATTTCTGTTCTGGAGAAGAAGAGAGTAAGCAAAGTG
CTCTCGTTGGTAGATGACGCTTTAGAACAACATCGCAGGAGAGTGTCAAC
AGCTGTTCTAAACGACGTTTTGCGAGATGCAGTGGAGTGGCACAAGCCGC
CAAGTACCAGAGCGGCGAAGCAGGGACGTATATATTATTGTACACAGGTT
GCCAGTAGACCTCCGACTATTGCAATGTTTGTCAATGATCCGCGACTCTT
CCATGATAATTATCGAAGGTACATGGCGGGTCAGTTTAGGAAGGCGCTCG
GATTCTTTGGTACGCCGATGCGACTGCTCTGGAGAGGAAAAGCAAGGGCT
CCGAATCTTGGTTAG