Gcaud3334.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3334.t1
Unique Name	Gcaud3334.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	433

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5789_length_1412_cov_4.283876	contig	NODE_5789_length_1412_cov_4.283876:116..1412 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3334	Gcaud3334	Gracilaria caudata M_176_S67 male	gene	NODE_5789_length_1412_cov_4.283876 116..1412 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3334.t1.CDS1	Gcaud3334.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5789_length_1412_cov_4.283876 116..1412 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3334.t1.exon1	Gcaud3334.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5789_length_1412_cov_4.283876 116..1412 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3334.t1	Gcaud3334.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5789_length_1412_cov_4.283876 116..1412 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5789_length_1412_cov_4.283876:116..1412+
coding sequence from alignment at NODE_5789_length_1412_cov_4.283876:116..1412+

mRNA sequence

>Gcaud3334.t1 ID=Gcaud3334.t1|Name=Gcaud3334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=433bp
XAVESVLSAIPNLPEDKRALTVELLEILVRYCVFSKQLNILEDLFPLSEP
SEAHNLVLEKLQSIDEDLRFDHWFIGSLTGAALMISSSENISVDQSSLTS
RYEQVEGIPVFDTLTKLEREAAKLVKELASVGTNLQHIAQFLAEYKDTMV
EXXXXGIAKTVKSVKDSVGVMVLENALNRKRDIRGGGGYTRLLLDNAENA
QTLVANGDNNGALSAMRNTNAPEETPTEYGPRDFDSLMNLVGSVILAPTP
PEMASTMSAVARALAAGVAARTVPNIIQVLTRIRDISFSGNDSANRLLAV
SGPMSACATIAARTLAILLSRGDENAEGILRKAVTSRLSVPFLHAQQRIS
RVIAFFSFVNSDEWIFTSASEDANWTVLLAALNIAEMSYPERSDENSGFI
ETFFGMFGRSNNYEGAVESVAFKIITLRPEYSQ

spliced messenger RNA

>Gcaud3334.t1 ID=Gcaud3334.t1|Name=Gcaud3334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1297bp|location=Sequence derived from alignment at NODE_5789_length_1412_cov_4.283876:116..1412+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GGCGGTGGAAAGTGTTCTTTCTGCTATCCCCAACCTCCCGGAAGACAAAA
GGGCGTTAACAGTTGAACTTCTAGAAATCTTGGTTCGGTACTGCGTATTC
AGCAAGCAGTTGAATATCCTGGAAGATCTTTTTCCTCTCAGTGAGCCGTC
TGAAGCACACAATCTTGTGTTAGAGAAACTTCAATCAATCGATGAAGATT
TGCGCTTTGATCACTGGTTCATTGGTAGCCTAACGGGGGCAGCGCTGATG
ATATCTTCTTCTGAGAACATTTCGGTGGATCAATCATCGCTGACTTCGCG
ATATGAGCAAGTGGAAGGTATTCCTGTGTTTGACACATTGACGAAACTTG
AGCGAGAAGCAGCCAAGTTGGTGAAAGAGCTAGCAAGCGTCGGCACAAAC
CTTCAACACATCGCACAATTCCTCGCGGAGTACAAGGATACGATGGTGGA
GNNNNNNNNNNTGGGTATAGCTAAAACGGTCAAGTCCGTGAAAGATTCGG
TCGGAGTCATGGTTTTGGAAAACGCTTTGAACAGAAAGCGCGACATTCGA
GGCGGAGGGGGATATACGCGGCTCCTCCTAGACAACGCGGAAAACGCCCA
GACTCTTGTAGCAAATGGTGATAACAATGGGGCTCTGTCTGCTATGCGTA
ACACCAATGCACCGGAGGAGACGCCAACGGAGTATGGTCCCCGGGATTTC
GATTCATTAATGAATTTAGTTGGGAGCGTGATTCTTGCTCCAACTCCCCC
CGAGATGGCTAGTACAATGTCTGCCGTTGCGAGGGCCCTTGCCGCTGGAG
TTGCAGCACGTACGGTTCCTAACATTATTCAAGTGCTAACAAGAATAAGG
GATATCAGCTTTAGCGGGAACGATTCGGCAAACAGGCTCTTGGCCGTTTC
TGGGCCAATGTCAGCGTGTGCGACAATTGCCGCTCGAACTTTGGCCATAC
TGCTAAGTCGTGGTGACGAAAACGCAGAGGGAATCCTACGCAAAGCGGTG
ACATCGCGATTATCTGTTCCGTTTCTTCATGCACAGCAGCGTATTTCTAG
GGTCATCGCCTTCTTTAGCTTCGTGAATTCTGACGAATGGATATTCACAA
GCGCATCTGAAGATGCTAACTGGACGGTGCTGCTCGCAGCCCTTAACATT
GCTGAGATGTCTTATCCGGAGAGAAGTGACGAAAACTCAGGTTTTATTGA
GACCTTCTTCGGTATGTTCGGGCGTTCAAATAACTACGAAGGTGCAGTGG
AAAGCGTAGCCTTCAAGATCATTACTCTTCGACCCGAATACTCTCAA

protein sequence of Gcaud3334.t1

>Gcaud3334.t1 ID=Gcaud3334.t1|Name=Gcaud3334.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=433bp
XAVESVLSAIPNLPEDKRALTVELLEILVRYCVFSKQLNILEDLFPLSEP
SEAHNLVLEKLQSIDEDLRFDHWFIGSLTGAALMISSSENISVDQSSLTS
RYEQVEGIPVFDTLTKLEREAAKLVKELASVGTNLQHIAQFLAEYKDTMV
EXXXXGIAKTVKSVKDSVGVMVLENALNRKRDIRGGGGYTRLLLDNAENA
QTLVANGDNNGALSAMRNTNAPEETPTEYGPRDFDSLMNLVGSVILAPTP
PEMASTMSAVARALAAGVAARTVPNIIQVLTRIRDISFSGNDSANRLLAV
SGPMSACATIAARTLAILLSRGDENAEGILRKAVTSRLSVPFLHAQQRIS
RVIAFFSFVNSDEWIFTSASEDANWTVLLAALNIAEMSYPERSDENSGFI
ETFFGMFGRSNNYEGAVESVAFKIITLRPEYSQ

mRNA from alignment at NODE_5789_length_1412_cov_4.283876:116..1412+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3334.t1 ID=Gcaud3334.t1|Name=Gcaud3334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1297bp|location=Sequence derived from alignment at NODE_5789_length_1412_cov_4.283876:116..1412+ (Gracilaria caudata M_176_S67 male)
GGCGGTGGAAAGTGTTCTTTCTGCTATCCCCAACCTCCCGGAAGACAAAA
GGGCGTTAACAGTTGAACTTCTAGAAATCTTGGTTCGGTACTGCGTATTC
AGCAAGCAGTTGAATATCCTGGAAGATCTTTTTCCTCTCAGTGAGCCGTC
TGAAGCACACAATCTTGTGTTAGAGAAACTTCAATCAATCGATGAAGATT
TGCGCTTTGATCACTGGTTCATTGGTAGCCTAACGGGGGCAGCGCTGATG
ATATCTTCTTCTGAGAACATTTCGGTGGATCAATCATCGCTGACTTCGCG
ATATGAGCAAGTGGAAGGTATTCCTGTGTTTGACACATTGACGAAACTTG
AGCGAGAAGCAGCCAAGTTGGTGAAAGAGCTAGCAAGCGTCGGCACAAAC
CTTCAACACATCGCACAATTCCTCGCGGAGTACAAGGATACGATGGTGGA
GNNNNNNNNNNTGGGTATAGCTAAAACGGTCAAGTCCGTGAAAGATTCGG
TCGGAGTCATGGTTTTGGAAAACGCTTTGAACAGAAAGCGCGACATTCGA
GGCGGAGGGGGATATACGCGGCTCCTCCTAGACAACGCGGAAAACGCCCA
GACTCTTGTAGCAAATGGTGATAACAATGGGGCTCTGTCTGCTATGCGTA
ACACCAATGCACCGGAGGAGACGCCAACGGAGTATGGTCCCCGGGATTTC
GATTCATTAATGAATTTAGTTGGGAGCGTGATTCTTGCTCCAACTCCCCC
CGAGATGGCTAGTACAATGTCTGCCGTTGCGAGGGCCCTTGCCGCTGGAG
TTGCAGCACGTACGGTTCCTAACATTATTCAAGTGCTAACAAGAATAAGG
GATATCAGCTTTAGCGGGAACGATTCGGCAAACAGGCTCTTGGCCGTTTC
TGGGCCAATGTCAGCGTGTGCGACAATTGCCGCTCGAACTTTGGCCATAC
TGCTAAGTCGTGGTGACGAAAACGCAGAGGGAATCCTACGCAAAGCGGTG
ACATCGCGATTATCTGTTCCGTTTCTTCATGCACAGCAGCGTATTTCTAG
GGTCATCGCCTTCTTTAGCTTCGTGAATTCTGACGAATGGATATTCACAA
GCGCATCTGAAGATGCTAACTGGACGGTGCTGCTCGCAGCCCTTAACATT
GCTGAGATGTCTTATCCGGAGAGAAGTGACGAAAACTCAGGTTTTATTGA
GACCTTCTTCGGTATGTTCGGGCGTTCAAATAACTACGAAGGTGCAGTGG
AAAGCGTAGCCTTCAAGATCATTACTCTTCGACCCGAATACTCTCAA

Coding sequence (CDS) from alignment at NODE_5789_length_1412_cov_4.283876:116..1412+

>Gcaud3334.t1 ID=Gcaud3334.t1|Name=Gcaud3334.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1297bp|location=Sequence derived from alignment at NODE_5789_length_1412_cov_4.283876:116..1412+ (Gracilaria caudata M_176_S67 male)
GGCGGTGGAAAGTGTTCTTTCTGCTATCCCCAACCTCCCGGAAGACAAAA
GGGCGTTAACAGTTGAACTTCTAGAAATCTTGGTTCGGTACTGCGTATTC
AGCAAGCAGTTGAATATCCTGGAAGATCTTTTTCCTCTCAGTGAGCCGTC
TGAAGCACACAATCTTGTGTTAGAGAAACTTCAATCAATCGATGAAGATT
TGCGCTTTGATCACTGGTTCATTGGTAGCCTAACGGGGGCAGCGCTGATG
ATATCTTCTTCTGAGAACATTTCGGTGGATCAATCATCGCTGACTTCGCG
ATATGAGCAAGTGGAAGGTATTCCTGTGTTTGACACATTGACGAAACTTG
AGCGAGAAGCAGCCAAGTTGGTGAAAGAGCTAGCAAGCGTCGGCACAAAC
CTTCAACACATCGCACAATTCCTCGCGGAGTACAAGGATACGATGGTGGA
GNNNNNNNNNNTGGGTATAGCTAAAACGGTCAAGTCCGTGAAAGATTCGG
TCGGAGTCATGGTTTTGGAAAACGCTTTGAACAGAAAGCGCGACATTCGA
GGCGGAGGGGGATATACGCGGCTCCTCCTAGACAACGCGGAAAACGCCCA
GACTCTTGTAGCAAATGGTGATAACAATGGGGCTCTGTCTGCTATGCGTA
ACACCAATGCACCGGAGGAGACGCCAACGGAGTATGGTCCCCGGGATTTC
GATTCATTAATGAATTTAGTTGGGAGCGTGATTCTTGCTCCAACTCCCCC
CGAGATGGCTAGTACAATGTCTGCCGTTGCGAGGGCCCTTGCCGCTGGAG
TTGCAGCACGTACGGTTCCTAACATTATTCAAGTGCTAACAAGAATAAGG
GATATCAGCTTTAGCGGGAACGATTCGGCAAACAGGCTCTTGGCCGTTTC
TGGGCCAATGTCAGCGTGTGCGACAATTGCCGCTCGAACTTTGGCCATAC
TGCTAAGTCGTGGTGACGAAAACGCAGAGGGAATCCTACGCAAAGCGGTG
ACATCGCGATTATCTGTTCCGTTTCTTCATGCACAGCAGCGTATTTCTAG
GGTCATCGCCTTCTTTAGCTTCGTGAATTCTGACGAATGGATATTCACAA
GCGCATCTGAAGATGCTAACTGGACGGTGCTGCTCGCAGCCCTTAACATT
GCTGAGATGTCTTATCCGGAGAGAAGTGACGAAAACTCAGGTTTTATTGA
GACCTTCTTCGGTATGTTCGGGCGTTCAAATAACTACGAAGGTGCAGTGG
AAAGCGTAGCCTTCAAGATCATTACTCTTCGACCCGAATACTCTCAA