Gcaud3330.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3330.t1
Unique Name	Gcaud3330.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	668

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_135_length_45127_cov_4.991851	contig	NODE_135_length_45127_cov_4.991851:34086..36089 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1313172.YM304_00980
PFAMs	Beta_propel
Max annot lvl	201174\|Actinobacteria
Evalue	9.87e-108
EggNOG OGs	COG1948@1\|root,COG4880@2\|Bacteria,2I8JU@201174\|Actinobacteria
Description	Beta propeller domain
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3330	Gcaud3330	Gracilaria caudata M_176_S67 male	gene	NODE_135_length_45127_cov_4.991851 34086..36089 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3330.t1.stop1	Gcaud3330.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_135_length_45127_cov_4.991851 34086..34088 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3330.t1.CDS1	Gcaud3330.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_135_length_45127_cov_4.991851 34086..36089 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3330.t1.exon1	Gcaud3330.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_135_length_45127_cov_4.991851 34086..36089 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3330.t1.start1	Gcaud3330.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_135_length_45127_cov_4.991851 36087..36089 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3330.t1	Gcaud3330.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_135_length_45127_cov_4.991851 34086..36089 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_135_length_45127_cov_4.991851:34086..36089-
coding sequence from alignment at NODE_135_length_45127_cov_4.991851:34086..36089-

mRNA sequence

>Gcaud3330.t1 ID=Gcaud3330.t1|Name=Gcaud3330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=668bp
MAALTTFCLALLLVFLNNFANASLISKFGNCPELNNYYINRAVNLVGPYG
LTSYNAYARSRSPEGLPEDPGTPGGPADLPLHRPFAEPQRVAGGNLTEAD
RDTSFDDPDENGLVAGVDFSTTNVQVTGVDEPDIIKTDGRRVFTVSGTTF
SVVEVLEGGKTGRRVGKLELPTAPRDMLIEGDFLLALGDVRSYRRPVHLR
YKTDPSYGEEATVVYQIHVSGGTPRLVSTLYLEGSYIKSREVEGVVRLVL
RFRPLSSIWLYYPTGDVQPSQTEKWNREIIQYSQPGNWLPTYRLQRNGRE
QFGVYATCSDIYYSQNVFAGFNLLTVVTLPIAGFLEPSSSASVMSDAETI
YATKKSMFVTTNEIRFDDVPANSPRWGANYQTAIHHFSLSDAGASYVASG
AVSGSIINQFAMHEWHDTFFIATTDGARWWTSRDLSRSKVTAFLPNRDTR
QLVKIGEVGNLGIGERIFSVRYIGETAYVVTFRQIDPLYIIDLSNPRAMR
VTGELKIPGFSSYLHPVGPGRLLGVGQEATETGRTTGAKVSLFDVSDKTN
PLELSSWTLSGSYSEAQWDHRAFLYWRRERVAVMPVNVYSSSQRFTGAIV
LDVSESTITERGRVTHNTTGLDWWNWWSRSIKRNAIIDKYLWSMSTKILQ
VNDLEQLSEVEAQVEIA*

spliced messenger RNA

>Gcaud3330.t1 ID=Gcaud3330.t1|Name=Gcaud3330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2004bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:34086..36089- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGCTCACAACATTCTGCCTTGCTCTCCTCCTCGTGTTCCTCAA
CAATTTCGCCAATGCAAGCCTCATCAGCAAGTTTGGCAACTGCCCGGAGC
TCAACAATTACTACATCAACCGCGCCGTAAACCTGGTCGGTCCGTACGGG
CTCACTTCCTACAATGCATATGCCCGATCTCGTTCTCCTGAGGGACTGCC
GGAAGACCCTGGAACGCCCGGTGGCCCCGCCGATCTTCCGCTCCATCGCC
CTTTCGCCGAACCGCAGCGCGTCGCCGGCGGCAATCTTACCGAGGCTGAT
CGCGACACGAGCTTTGATGACCCCGACGAAAATGGGCTGGTCGCCGGCGT
CGACTTCTCGACAACCAACGTCCAGGTCACGGGCGTGGACGAGCCGGACA
TCATCAAGACGGACGGCCGCCGTGTGTTCACCGTGAGCGGCACCACGTTC
TCCGTTGTTGAGGTGCTGGAGGGAGGAAAGACCGGCCGCCGCGTTGGCAA
GCTGGAGCTGCCCACGGCGCCGCGGGACATGCTGATTGAGGGTGACTTCT
TGCTGGCGCTCGGCGACGTCCGTTCGTATAGGCGTCCTGTACACCTTCGG
TACAAGACAGACCCTTCGTATGGCGAGGAGGCCACCGTCGTGTACCAGAT
CCACGTCAGCGGTGGCACGCCACGCCTCGTGTCTACGCTCTATCTCGAGG
GTAGCTACATCAAGTCGCGCGAGGTCGAGGGAGTCGTCCGCCTCGTTCTG
CGTTTCCGCCCGCTGTCTTCCATCTGGCTGTACTATCCAACGGGCGACGT
GCAACCCTCTCAGACCGAGAAGTGGAACCGTGAGATCATCCAGTACTCGC
AACCAGGCAACTGGCTGCCGACGTACCGCCTGCAGCGCAACGGCCGCGAG
CAGTTCGGCGTGTACGCGACGTGCAGCGATATCTACTACTCGCAGAACGT
GTTCGCAGGCTTCAACCTCCTCACCGTCGTCACGCTGCCTATCGCGGGCT
TCCTGGAACCGTCCAGCTCGGCGTCCGTCATGTCGGACGCGGAAACAATC
TACGCCACGAAGAAGTCAATGTTCGTGACGACGAACGAGATCCGCTTCGA
CGATGTGCCCGCGAACTCGCCGCGCTGGGGAGCAAACTATCAGACGGCGA
TCCACCACTTCTCTCTTTCGGACGCTGGCGCCTCGTACGTCGCAAGCGGC
GCCGTGAGCGGCAGCATCATCAACCAGTTTGCCATGCACGAGTGGCATGA
CACGTTCTTCATCGCGACGACAGACGGGGCGCGGTGGTGGACCAGCCGCG
ATCTGAGCCGCAGTAAGGTGACCGCGTTCCTGCCCAACCGAGACACGCGC
CAGCTCGTGAAGATCGGCGAAGTCGGAAACCTCGGCATCGGTGAGCGCAT
TTTCTCCGTGCGTTACATCGGGGAAACGGCGTACGTCGTGACGTTCCGCC
AGATTGACCCGCTGTACATCATCGACCTGTCCAACCCGCGTGCGATGCGT
GTGACAGGCGAGCTCAAGATCCCTGGGTTCAGCTCTTACCTACATCCAGT
TGGACCTGGGCGCCTCCTCGGTGTCGGACAGGAGGCTACGGAGACTGGGC
GCACTACGGGGGCGAAGGTGTCGCTGTTCGATGTGAGCGACAAGACAAAC
CCGCTTGAGCTCTCCTCTTGGACGCTATCGGGGAGCTATTCGGAGGCACA
GTGGGATCACCGCGCATTCTTGTACTGGCGCCGCGAGCGTGTGGCTGTAA
TGCCGGTGAACGTGTACTCGTCGTCGCAGCGGTTCACGGGCGCGATTGTG
CTCGACGTATCCGAATCGACCATCACGGAGCGCGGCCGCGTGACACACAA
CACAACCGGGCTGGACTGGTGGAACTGGTGGAGCCGTAGTATCAAGCGTA
ATGCAATCATAGACAAATACCTGTGGTCCATGTCAACGAAGATTCTTCAG
GTGAACGATCTGGAGCAGCTGAGCGAGGTCGAGGCACAAGTCGAAATCGC
GTAG

protein sequence of Gcaud3330.t1

>Gcaud3330.t1 ID=Gcaud3330.t1|Name=Gcaud3330.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=668bp
MAALTTFCLALLLVFLNNFANASLISKFGNCPELNNYYINRAVNLVGPYG
LTSYNAYARSRSPEGLPEDPGTPGGPADLPLHRPFAEPQRVAGGNLTEAD
RDTSFDDPDENGLVAGVDFSTTNVQVTGVDEPDIIKTDGRRVFTVSGTTF
SVVEVLEGGKTGRRVGKLELPTAPRDMLIEGDFLLALGDVRSYRRPVHLR
YKTDPSYGEEATVVYQIHVSGGTPRLVSTLYLEGSYIKSREVEGVVRLVL
RFRPLSSIWLYYPTGDVQPSQTEKWNREIIQYSQPGNWLPTYRLQRNGRE
QFGVYATCSDIYYSQNVFAGFNLLTVVTLPIAGFLEPSSSASVMSDAETI
YATKKSMFVTTNEIRFDDVPANSPRWGANYQTAIHHFSLSDAGASYVASG
AVSGSIINQFAMHEWHDTFFIATTDGARWWTSRDLSRSKVTAFLPNRDTR
QLVKIGEVGNLGIGERIFSVRYIGETAYVVTFRQIDPLYIIDLSNPRAMR
VTGELKIPGFSSYLHPVGPGRLLGVGQEATETGRTTGAKVSLFDVSDKTN
PLELSSWTLSGSYSEAQWDHRAFLYWRRERVAVMPVNVYSSSQRFTGAIV
LDVSESTITERGRVTHNTTGLDWWNWWSRSIKRNAIIDKYLWSMSTKILQ
VNDLEQLSEVEAQVEIA*

mRNA from alignment at NODE_135_length_45127_cov_4.991851:34086..36089-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3330.t1 ID=Gcaud3330.t1|Name=Gcaud3330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2004bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:34086..36089- (Gracilaria caudata M_176_S67 male)
ATGGCGGCGCTCACAACATTCTGCCTTGCTCTCCTCCTCGTGTTCCTCAA
CAATTTCGCCAATGCAAGCCTCATCAGCAAGTTTGGCAACTGCCCGGAGC
TCAACAATTACTACATCAACCGCGCCGTAAACCTGGTCGGTCCGTACGGG
CTCACTTCCTACAATGCATATGCCCGATCTCGTTCTCCTGAGGGACTGCC
GGAAGACCCTGGAACGCCCGGTGGCCCCGCCGATCTTCCGCTCCATCGCC
CTTTCGCCGAACCGCAGCGCGTCGCCGGCGGCAATCTTACCGAGGCTGAT
CGCGACACGAGCTTTGATGACCCCGACGAAAATGGGCTGGTCGCCGGCGT
CGACTTCTCGACAACCAACGTCCAGGTCACGGGCGTGGACGAGCCGGACA
TCATCAAGACGGACGGCCGCCGTGTGTTCACCGTGAGCGGCACCACGTTC
TCCGTTGTTGAGGTGCTGGAGGGAGGAAAGACCGGCCGCCGCGTTGGCAA
GCTGGAGCTGCCCACGGCGCCGCGGGACATGCTGATTGAGGGTGACTTCT
TGCTGGCGCTCGGCGACGTCCGTTCGTATAGGCGTCCTGTACACCTTCGG
TACAAGACAGACCCTTCGTATGGCGAGGAGGCCACCGTCGTGTACCAGAT
CCACGTCAGCGGTGGCACGCCACGCCTCGTGTCTACGCTCTATCTCGAGG
GTAGCTACATCAAGTCGCGCGAGGTCGAGGGAGTCGTCCGCCTCGTTCTG
CGTTTCCGCCCGCTGTCTTCCATCTGGCTGTACTATCCAACGGGCGACGT
GCAACCCTCTCAGACCGAGAAGTGGAACCGTGAGATCATCCAGTACTCGC
AACCAGGCAACTGGCTGCCGACGTACCGCCTGCAGCGCAACGGCCGCGAG
CAGTTCGGCGTGTACGCGACGTGCAGCGATATCTACTACTCGCAGAACGT
GTTCGCAGGCTTCAACCTCCTCACCGTCGTCACGCTGCCTATCGCGGGCT
TCCTGGAACCGTCCAGCTCGGCGTCCGTCATGTCGGACGCGGAAACAATC
TACGCCACGAAGAAGTCAATGTTCGTGACGACGAACGAGATCCGCTTCGA
CGATGTGCCCGCGAACTCGCCGCGCTGGGGAGCAAACTATCAGACGGCGA
TCCACCACTTCTCTCTTTCGGACGCTGGCGCCTCGTACGTCGCAAGCGGC
GCCGTGAGCGGCAGCATCATCAACCAGTTTGCCATGCACGAGTGGCATGA
CACGTTCTTCATCGCGACGACAGACGGGGCGCGGTGGTGGACCAGCCGCG
ATCTGAGCCGCAGTAAGGTGACCGCGTTCCTGCCCAACCGAGACACGCGC
CAGCTCGTGAAGATCGGCGAAGTCGGAAACCTCGGCATCGGTGAGCGCAT
TTTCTCCGTGCGTTACATCGGGGAAACGGCGTACGTCGTGACGTTCCGCC
AGATTGACCCGCTGTACATCATCGACCTGTCCAACCCGCGTGCGATGCGT
GTGACAGGCGAGCTCAAGATCCCTGGGTTCAGCTCTTACCTACATCCAGT
TGGACCTGGGCGCCTCCTCGGTGTCGGACAGGAGGCTACGGAGACTGGGC
GCACTACGGGGGCGAAGGTGTCGCTGTTCGATGTGAGCGACAAGACAAAC
CCGCTTGAGCTCTCCTCTTGGACGCTATCGGGGAGCTATTCGGAGGCACA
GTGGGATCACCGCGCATTCTTGTACTGGCGCCGCGAGCGTGTGGCTGTAA
TGCCGGTGAACGTGTACTCGTCGTCGCAGCGGTTCACGGGCGCGATTGTG
CTCGACGTATCCGAATCGACCATCACGGAGCGCGGCCGCGTGACACACAA
CACAACCGGGCTGGACTGGTGGAACTGGTGGAGCCGTAGTATCAAGCGTA
ATGCAATCATAGACAAATACCTGTGGTCCATGTCAACGAAGATTCTTCAG
GTGAACGATCTGGAGCAGCTGAGCGAGGTCGAGGCACAAGTCGAAATCGC
GTAG

Coding sequence (CDS) from alignment at NODE_135_length_45127_cov_4.991851:34086..36089-

>Gcaud3330.t1 ID=Gcaud3330.t1|Name=Gcaud3330.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2004bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:34086..36089- (Gracilaria caudata M_176_S67 male)
ATGGCGGCGCTCACAACATTCTGCCTTGCTCTCCTCCTCGTGTTCCTCAA
CAATTTCGCCAATGCAAGCCTCATCAGCAAGTTTGGCAACTGCCCGGAGC
TCAACAATTACTACATCAACCGCGCCGTAAACCTGGTCGGTCCGTACGGG
CTCACTTCCTACAATGCATATGCCCGATCTCGTTCTCCTGAGGGACTGCC
GGAAGACCCTGGAACGCCCGGTGGCCCCGCCGATCTTCCGCTCCATCGCC
CTTTCGCCGAACCGCAGCGCGTCGCCGGCGGCAATCTTACCGAGGCTGAT
CGCGACACGAGCTTTGATGACCCCGACGAAAATGGGCTGGTCGCCGGCGT
CGACTTCTCGACAACCAACGTCCAGGTCACGGGCGTGGACGAGCCGGACA
TCATCAAGACGGACGGCCGCCGTGTGTTCACCGTGAGCGGCACCACGTTC
TCCGTTGTTGAGGTGCTGGAGGGAGGAAAGACCGGCCGCCGCGTTGGCAA
GCTGGAGCTGCCCACGGCGCCGCGGGACATGCTGATTGAGGGTGACTTCT
TGCTGGCGCTCGGCGACGTCCGTTCGTATAGGCGTCCTGTACACCTTCGG
TACAAGACAGACCCTTCGTATGGCGAGGAGGCCACCGTCGTGTACCAGAT
CCACGTCAGCGGTGGCACGCCACGCCTCGTGTCTACGCTCTATCTCGAGG
GTAGCTACATCAAGTCGCGCGAGGTCGAGGGAGTCGTCCGCCTCGTTCTG
CGTTTCCGCCCGCTGTCTTCCATCTGGCTGTACTATCCAACGGGCGACGT
GCAACCCTCTCAGACCGAGAAGTGGAACCGTGAGATCATCCAGTACTCGC
AACCAGGCAACTGGCTGCCGACGTACCGCCTGCAGCGCAACGGCCGCGAG
CAGTTCGGCGTGTACGCGACGTGCAGCGATATCTACTACTCGCAGAACGT
GTTCGCAGGCTTCAACCTCCTCACCGTCGTCACGCTGCCTATCGCGGGCT
TCCTGGAACCGTCCAGCTCGGCGTCCGTCATGTCGGACGCGGAAACAATC
TACGCCACGAAGAAGTCAATGTTCGTGACGACGAACGAGATCCGCTTCGA
CGATGTGCCCGCGAACTCGCCGCGCTGGGGAGCAAACTATCAGACGGCGA
TCCACCACTTCTCTCTTTCGGACGCTGGCGCCTCGTACGTCGCAAGCGGC
GCCGTGAGCGGCAGCATCATCAACCAGTTTGCCATGCACGAGTGGCATGA
CACGTTCTTCATCGCGACGACAGACGGGGCGCGGTGGTGGACCAGCCGCG
ATCTGAGCCGCAGTAAGGTGACCGCGTTCCTGCCCAACCGAGACACGCGC
CAGCTCGTGAAGATCGGCGAAGTCGGAAACCTCGGCATCGGTGAGCGCAT
TTTCTCCGTGCGTTACATCGGGGAAACGGCGTACGTCGTGACGTTCCGCC
AGATTGACCCGCTGTACATCATCGACCTGTCCAACCCGCGTGCGATGCGT
GTGACAGGCGAGCTCAAGATCCCTGGGTTCAGCTCTTACCTACATCCAGT
TGGACCTGGGCGCCTCCTCGGTGTCGGACAGGAGGCTACGGAGACTGGGC
GCACTACGGGGGCGAAGGTGTCGCTGTTCGATGTGAGCGACAAGACAAAC
CCGCTTGAGCTCTCCTCTTGGACGCTATCGGGGAGCTATTCGGAGGCACA
GTGGGATCACCGCGCATTCTTGTACTGGCGCCGCGAGCGTGTGGCTGTAA
TGCCGGTGAACGTGTACTCGTCGTCGCAGCGGTTCACGGGCGCGATTGTG
CTCGACGTATCCGAATCGACCATCACGGAGCGCGGCCGCGTGACACACAA
CACAACCGGGCTGGACTGGTGGAACTGGTGGAGCCGTAGTATCAAGCGTA
ATGCAATCATAGACAAATACCTGTGGTCCATGTCAACGAAGATTCTTCAG
GTGAACGATCTGGAGCAGCTGAGCGAGGTCGAGGCACAAGTCGAAATCGC
GTAG