Gcaud3324.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3324.t1
Unique NameGcaud3324.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_135_length_45127_cov_4.991851contigNODE_135_length_45127_cov_4.991851:14424..14807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog321327.CYA_2834
Preferred namehliC
PFAMsChloroa_b-bind
Max annot lvl1117|Cyanobacteria
Evalue1.95e-08
EggNOG OGs2EACI@1|root,334GG@2|Bacteria,1G907@1117|Cyanobacteria,1H1H0@1129|Synechococcus
DescriptionChlorophyll A-B binding protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3324Gcaud3324Gracilaria caudata M_176_S67 malegeneNODE_135_length_45127_cov_4.991851 14424..14807 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3324.t1.start1Gcaud3324.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_135_length_45127_cov_4.991851 14424..14426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3324.t1.CDS1Gcaud3324.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_135_length_45127_cov_4.991851 14424..14807 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3324.t1.exon1Gcaud3324.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_135_length_45127_cov_4.991851 14424..14807 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3324.t1.stop1Gcaud3324.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_135_length_45127_cov_4.991851 14805..14807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3324.t1Gcaud3324.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_135_length_45127_cov_4.991851 14424..14807 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3324.t1 ID=Gcaud3324.t1|Name=Gcaud3324.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=128bp
MHSSTAFASSFTPSLNTKSFVSSTTAQVPRIFAATPRMALQTKEKTKPAQ
SPYRSLEANRAAKLASEYRGPQGFTPYAEKVNGRLAQLGFLIGLITEIAT
GKGINEQILIMFSPLIHLVESLGRLAS*
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spliced messenger RNA

>Gcaud3324.t1 ID=Gcaud3324.t1|Name=Gcaud3324.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:14424..14807+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCTTCCACAGCATTTGCCTCGTCCTTCACCCCCTCGCTCAACAC
CAAGTCCTTCGTCTCATCCACCACCGCGCAAGTTCCGCGCATCTTCGCCG
CCACCCCTCGCATGGCACTGCAAACAAAGGAAAAGACCAAGCCCGCTCAA
TCTCCCTACCGCTCTCTGGAGGCCAACCGCGCTGCAAAGCTGGCAAGCGA
GTACCGGGGGCCGCAGGGTTTCACGCCGTACGCCGAAAAGGTCAACGGAC
GTCTGGCGCAGCTCGGATTTTTGATCGGTTTGATCACGGAGATCGCTACT
GGAAAAGGAATCAACGAGCAAATCCTCATCATGTTCTCGCCACTCATTCA
CCTTGTTGAGAGCCTGGGACGACTTGCCAGCTGA
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protein sequence of Gcaud3324.t1

>Gcaud3324.t1 ID=Gcaud3324.t1|Name=Gcaud3324.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=128bp
MHSSTAFASSFTPSLNTKSFVSSTTAQVPRIFAATPRMALQTKEKTKPAQ
SPYRSLEANRAAKLASEYRGPQGFTPYAEKVNGRLAQLGFLIGLITEIAT
GKGINEQILIMFSPLIHLVESLGRLAS*
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mRNA from alignment at NODE_135_length_45127_cov_4.991851:14424..14807+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3324.t1 ID=Gcaud3324.t1|Name=Gcaud3324.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:14424..14807+ (Gracilaria caudata M_176_S67 male)
ATGCATTCTTCCACAGCATTTGCCTCGTCCTTCACCCCCTCGCTCAACAC
CAAGTCCTTCGTCTCATCCACCACCGCGCAAGTTCCGCGCATCTTCGCCG
CCACCCCTCGCATGGCACTGCAAACAAAGGAAAAGACCAAGCCCGCTCAA
TCTCCCTACCGCTCTCTGGAGGCCAACCGCGCTGCAAAGCTGGCAAGCGA
GTACCGGGGGCCGCAGGGTTTCACGCCGTACGCCGAAAAGGTCAACGGAC
GTCTGGCGCAGCTCGGATTTTTGATCGGTTTGATCACGGAGATCGCTACT
GGAAAAGGAATCAACGAGCAAATCCTCATCATGTTCTCGCCACTCATTCA
CCTTGTTGAGAGCCTGGGACGACTTGCCAGCTGA
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Coding sequence (CDS) from alignment at NODE_135_length_45127_cov_4.991851:14424..14807+

>Gcaud3324.t1 ID=Gcaud3324.t1|Name=Gcaud3324.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=384bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:14424..14807+ (Gracilaria caudata M_176_S67 male)
ATGCATTCTTCCACAGCATTTGCCTCGTCCTTCACCCCCTCGCTCAACAC
CAAGTCCTTCGTCTCATCCACCACCGCGCAAGTTCCGCGCATCTTCGCCG
CCACCCCTCGCATGGCACTGCAAACAAAGGAAAAGACCAAGCCCGCTCAA
TCTCCCTACCGCTCTCTGGAGGCCAACCGCGCTGCAAAGCTGGCAAGCGA
GTACCGGGGGCCGCAGGGTTTCACGCCGTACGCCGAAAAGGTCAACGGAC
GTCTGGCGCAGCTCGGATTTTTGATCGGTTTGATCACGGAGATCGCTACT
GGAAAAGGAATCAACGAGCAAATCCTCATCATGTTCTCGCCACTCATTCA
CCTTGTTGAGAGCCTGGGACGACTTGCCAGCTGA
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