Gcaud3323.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3323.t2
Unique NameGcaud3323.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_135_length_45127_cov_4.991851contigNODE_135_length_45127_cov_4.991851:11791..12273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3323Gcaud3323Gracilaria caudata M_176_S67 malegeneNODE_135_length_45127_cov_4.991851 196..12273 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3323.t2.stop1Gcaud3323.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_135_length_45127_cov_4.991851 11791..11793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3323.t2.CDS1Gcaud3323.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_135_length_45127_cov_4.991851 11791..12273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3323.t2.exon1Gcaud3323.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_135_length_45127_cov_4.991851 11791..12273 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3323.t2.start1Gcaud3323.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_135_length_45127_cov_4.991851 12271..12273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3323.t2Gcaud3323.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_135_length_45127_cov_4.991851 11791..12273 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3323.t2 ID=Gcaud3323.t2|Name=Gcaud3323.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=161bp
MLLLLVLLQLNNVVHVQPVHIPKDMINAMNVKLELSAAEQPANVPYVKQV
QWVRKTLGLQVAFHANPVNMADVQVGTFPALMLLALIVLRIQHRTLPVED
SVEELMAHVPVATSKPLPETANGVKLTKGTIWNWNDVCPVIELRVVSVGF
HFNALHVPMS*
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spliced messenger RNA

>Gcaud3323.t2 ID=Gcaud3323.t2|Name=Gcaud3323.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:11791..12273- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTCCTCCTGGTTCTACTTCAATTGAACAATGTAGTCCATGTCCA
GCCGGTACATATTCCGAAGGATATGATCAATGCCATGAATGTGAAGCTGG
AACTTTCAGCGGCCGAGCAGCCGGCAAATGTACCTTATGTCAAGCAGGTT
CAATGGGTGAGAAAGACTTTGGGTCTACAAGTTGCATTCCATGCCAACCC
GGTCAATATGGCAGACGTACAAGTTGGTACCTTTCCGGCACTAATGCTGC
TTGCTTTGATTGTCCTGAGAATACAACATCGTACACTCCCGGTAGAAGAT
TCTGTAGAAGAATTGATGGCCCATGTCCCCGTGGCTACATCCAAACCTCT
TCCGGAGACTGCGAACGGTGTGAAACTGACCAAAGGTACGATTTGGAACT
GGAACGATGTGTGCCCTGTGATAGAACTGAGGGTAGTGTCGGTGGGCTTC
CACTTCAATGCGCTCCATGTGCCGATGTCTTAA
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protein sequence of Gcaud3323.t2

>Gcaud3323.t2 ID=Gcaud3323.t2|Name=Gcaud3323.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=161bp
MLLLLVLLQLNNVVHVQPVHIPKDMINAMNVKLELSAAEQPANVPYVKQV
QWVRKTLGLQVAFHANPVNMADVQVGTFPALMLLALIVLRIQHRTLPVED
SVEELMAHVPVATSKPLPETANGVKLTKGTIWNWNDVCPVIELRVVSVGF
HFNALHVPMS*
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mRNA from alignment at NODE_135_length_45127_cov_4.991851:11791..12273-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3323.t2 ID=Gcaud3323.t2|Name=Gcaud3323.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:11791..12273- (Gracilaria caudata M_176_S67 male)
ATGCTGCTCCTCCTGGTTCTACTTCAATTGAACAATGTAGTCCATGTCCA
GCCGGTACATATTCCGAAGGATATGATCAATGCCATGAATGTGAAGCTGG
AACTTTCAGCGGCCGAGCAGCCGGCAAATGTACCTTATGTCAAGCAGGTT
CAATGGGTGAGAAAGACTTTGGGTCTACAAGTTGCATTCCATGCCAACCC
GGTCAATATGGCAGACGTACAAGTTGGTACCTTTCCGGCACTAATGCTGC
TTGCTTTGATTGTCCTGAGAATACAACATCGTACACTCCCGGTAGAAGAT
TCTGTAGAAGAATTGATGGCCCATGTCCCCGTGGCTACATCCAAACCTCT
TCCGGAGACTGCGAACGGTGTGAAACTGACCAAAGGTACGATTTGGAACT
GGAACGATGTGTGCCCTGTGATAGAACTGAGGGTAGTGTCGGTGGGCTTC
CACTTCAATGCGCTCCATGTGCCGATGTCTTAA
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Coding sequence (CDS) from alignment at NODE_135_length_45127_cov_4.991851:11791..12273-

>Gcaud3323.t2 ID=Gcaud3323.t2|Name=Gcaud3323.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=483bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:11791..12273- (Gracilaria caudata M_176_S67 male)
ATGCTGCTCCTCCTGGTTCTACTTCAATTGAACAATGTAGTCCATGTCCA
GCCGGTACATATTCCGAAGGATATGATCAATGCCATGAATGTGAAGCTGG
AACTTTCAGCGGCCGAGCAGCCGGCAAATGTACCTTATGTCAAGCAGGTT
CAATGGGTGAGAAAGACTTTGGGTCTACAAGTTGCATTCCATGCCAACCC
GGTCAATATGGCAGACGTACAAGTTGGTACCTTTCCGGCACTAATGCTGC
TTGCTTTGATTGTCCTGAGAATACAACATCGTACACTCCCGGTAGAAGAT
TCTGTAGAAGAATTGATGGCCCATGTCCCCGTGGCTACATCCAAACCTCT
TCCGGAGACTGCGAACGGTGTGAAACTGACCAAAGGTACGATTTGGAACT
GGAACGATGTGTGCCCTGTGATAGAACTGAGGGTAGTGTCGGTGGGCTTC
CACTTCAATGCGCTCCATGTGCCGATGTCTTAA
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