Gcaud3322.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3322.t1
Unique NameGcaud3322.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length43
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1225_length_12409_cov_4.475727contigNODE_1225_length_12409_cov_4.475727:8489..8873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3322Gcaud3322Gracilaria caudata M_176_S67 malegeneNODE_1225_length_12409_cov_4.475727 8489..8873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3322.t1Gcaud3322.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1225_length_12409_cov_4.475727 8489..8873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3322.t1.CDS1Gcaud3322.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1225_length_12409_cov_4.475727 8489..8524 +
Gcaud3322.t1.CDS2Gcaud3322.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1225_length_12409_cov_4.475727 8781..8873 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3322.t1.exon1Gcaud3322.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1225_length_12409_cov_4.475727 8489..8524 +
Gcaud3322.t1.exon2Gcaud3322.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1225_length_12409_cov_4.475727 8781..8873 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3322.t1.intron1Gcaud3322.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1225_length_12409_cov_4.475727 8525..8780 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3322.t1.stop1Gcaud3322.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1225_length_12409_cov_4.475727 8871..8873 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3322.t1 ID=Gcaud3322.t1|Name=Gcaud3322.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=43bp
LISVTVMWSDRQFNLDSVSTRRSSSIYYRAPDKALPPAVAKE*
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spliced messenger RNA

>Gcaud3322.t1 ID=Gcaud3322.t1|Name=Gcaud3322.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=129bp|location=Sequence derived from alignment at NODE_1225_length_12409_cov_4.475727:8489..8873+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGATTTCTGTCACTGTAATGTGGTCTGACAGGCAGTTCAATTTGGACAG
CGTTTCAACGAGACGAAGCTCGAGTATCTACTACAGGGCACCCGACAAAG
CGCTGCCCCCCGCGGTTGCGAAGGAGTGA
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protein sequence of Gcaud3322.t1

>Gcaud3322.t1 ID=Gcaud3322.t1|Name=Gcaud3322.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=43bp
LISVTVMWSDRQFNLDSVSTRRSSSIYYRAPDKALPPAVAKE*
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mRNA from alignment at NODE_1225_length_12409_cov_4.475727:8489..8873+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3322.t1 ID=Gcaud3322.t1|Name=Gcaud3322.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=385bp|location=Sequence derived from alignment at NODE_1225_length_12409_cov_4.475727:8489..8873+ (Gracilaria caudata M_176_S67 male)
CTGATTTCTGTCACTGTAATGTGGTCTGACAGGCAGGTACGTTGCAGTAA
CGGGAAGTCGTAGGGCAGTGCCACCGTCTCGGAGAGCACCCTCTCCGACG
GGGATGCTCACGATTTGCGTCGATGACGGCAACGCCACAATCGCGAACGC
TGCGCCCAACAAAAGGCCCGTTCCACCGTCCATAGCGCGCTCGCGTTCAG
TAGCACTTGAGAGCTGCAGTTTCTGGTTCGTATTCCAATCTGACGAAAAA
GCACGGTGCGTGGTGATGAACGACTATTGCCCGAATTGAAAGTTCAATTT
GGACAGCGTTTCAACGAGACGAAGCTCGAGTATCTACTACAGGGCACCCG
ACAAAGCGCTGCCCCCCGCGGTTGCGAAGGAGTGA
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Coding sequence (CDS) from alignment at NODE_1225_length_12409_cov_4.475727:8489..8873+

>Gcaud3322.t1 ID=Gcaud3322.t1|Name=Gcaud3322.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=129bp|location=Sequence derived from alignment at NODE_1225_length_12409_cov_4.475727:8489..8873+ (Gracilaria caudata M_176_S67 male)
CTGATTTCTGTCACTGTAATGTGGTCTGACAGGCAGTTCAATTTGGACAG
CGTTTCAACGAGACGAAGCTCGAGTATCTACTACAGGGCACCCGACAAAG
CGCTGCCCCCCGCGGTTGCGAAGGAGTGA
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