Gcaud3316.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3316.t1
Unique Name	Gcaud3316.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	421

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_375_length_27991_cov_4.438244	contig	NODE_375_length_27991_cov_4.438244:16649..17911 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3316	Gcaud3316	Gracilaria caudata M_176_S67 male	gene	NODE_375_length_27991_cov_4.438244 16649..17911 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3316.t1.stop1	Gcaud3316.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_375_length_27991_cov_4.438244 16649..16651 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3316.t1.CDS1	Gcaud3316.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_375_length_27991_cov_4.438244 16649..17911 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3316.t1.exon1	Gcaud3316.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_375_length_27991_cov_4.438244 16649..17911 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3316.t1.start1	Gcaud3316.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_375_length_27991_cov_4.438244 17909..17911 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3316.t1	Gcaud3316.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_375_length_27991_cov_4.438244 16649..17911 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_375_length_27991_cov_4.438244:16649..17911-
coding sequence from alignment at NODE_375_length_27991_cov_4.438244:16649..17911-

mRNA sequence

>Gcaud3316.t1 ID=Gcaud3316.t1|Name=Gcaud3316.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=421bp
MRQHAADNLFQNIPPLYPSSPFPSIDYVATPFAELLDAIASIMILWTTSA
IVNRLMTIPFGKDTRSIVLKRMFDRLMNLSFASCGRFRAHSHCKNSFASL
LFRVISISFFVVLGGMELLVIFSQTYQQKTRSLDVLNLKSPTIQIPQNES
QKTGFFKGCVPLLSGDRTSISLVLTLCNYEEFDYGTRVARRNGFEFQFNS
SDWRFFEVYESQSFVDLYSRISVEIRDPRRSALYFANMTRLGFSMTPPKL
EWLLRKLNEICASCNASADFISPVFSVIRSDINPIVDETKSVDVGILFAD
EVQSMLRLSNRQLKTKDFLGHNGQDDESKQGLLEMTSDRVKRVSGLTLWI
VLAALAIINLVTSRLMTDVDDDVNDIVASVLACPPGTSLLDCDNTRFSIV
DTHPPSLQREMADETEQHIF*

spliced messenger RNA

>Gcaud3316.t1 ID=Gcaud3316.t1|Name=Gcaud3316.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:16649..17911- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACAACACGCAGCTGACAATCTCTTTCAGAACATCCCACCGCTGTA
TCCATCTTCGCCTTTTCCATCAATTGACTACGTTGCAACACCATTTGCAG
AACTTCTTGACGCAATCGCTTCAATTATGATTCTGTGGACTACTTCAGCA
ATAGTGAATCGATTAATGACCATTCCATTCGGAAAAGACACTCGATCTAT
TGTGCTGAAACGAATGTTTGATCGTCTCATGAACCTCAGCTTTGCGTCTT
GTGGCCGTTTTAGAGCTCATTCACACTGCAAGAATTCGTTCGCCAGCCTA
CTGTTTAGGGTCATTTCAATATCATTCTTTGTGGTTCTTGGGGGCATGGA
GCTCCTTGTTATATTTTCTCAAACATATCAGCAGAAGACCAGAAGTCTGG
ATGTTTTGAATCTCAAGAGCCCTACCATCCAGATCCCTCAGAACGAGAGC
CAAAAGACAGGATTCTTTAAGGGATGTGTACCGCTGTTATCGGGAGATCG
TACCAGTATCAGTCTTGTGCTCACGCTATGCAATTATGAAGAGTTTGACT
ATGGAACAAGAGTTGCTCGACGAAACGGGTTTGAGTTTCAATTTAATTCT
TCTGATTGGCGATTCTTTGAAGTATATGAATCACAATCTTTCGTGGATTT
GTATAGCAGAATATCCGTAGAGATCAGGGATCCAAGACGCTCGGCGCTAT
ATTTTGCCAATATGACTCGTCTTGGATTCTCCATGACTCCGCCCAAACTG
GAATGGCTTTTGAGAAAGCTGAACGAAATCTGTGCCTCGTGCAATGCTAG
TGCGGACTTCATTAGCCCGGTGTTTTCTGTTATCCGTTCAGATATTAATC
CAATCGTAGACGAGACTAAAAGCGTGGATGTTGGTATTCTATTTGCGGAT
GAGGTGCAGTCAATGCTTCGCTTGTCAAATAGACAACTGAAAACCAAAGA
CTTCCTTGGCCACAATGGACAAGATGACGAAAGTAAGCAGGGTTTGCTCG
AAATGACTTCTGACAGGGTGAAGAGAGTGAGCGGATTGACGTTATGGATT
GTTCTTGCAGCACTTGCCATAATCAACCTTGTGACTAGTCGACTCATGAC
CGATGTGGACGACGACGTCAATGACATTGTCGCATCGGTACTGGCATGCC
CGCCGGGAACATCACTACTGGATTGCGATAACACAAGATTCTCAATCGTG
GATACACACCCTCCATCTCTTCAGCGTGAAATGGCTGATGAAACTGAACA
ACACATCTTCTAA

protein sequence of Gcaud3316.t1

>Gcaud3316.t1 ID=Gcaud3316.t1|Name=Gcaud3316.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=421bp
MRQHAADNLFQNIPPLYPSSPFPSIDYVATPFAELLDAIASIMILWTTSA
IVNRLMTIPFGKDTRSIVLKRMFDRLMNLSFASCGRFRAHSHCKNSFASL
LFRVISISFFVVLGGMELLVIFSQTYQQKTRSLDVLNLKSPTIQIPQNES
QKTGFFKGCVPLLSGDRTSISLVLTLCNYEEFDYGTRVARRNGFEFQFNS
SDWRFFEVYESQSFVDLYSRISVEIRDPRRSALYFANMTRLGFSMTPPKL
EWLLRKLNEICASCNASADFISPVFSVIRSDINPIVDETKSVDVGILFAD
EVQSMLRLSNRQLKTKDFLGHNGQDDESKQGLLEMTSDRVKRVSGLTLWI
VLAALAIINLVTSRLMTDVDDDVNDIVASVLACPPGTSLLDCDNTRFSIV
DTHPPSLQREMADETEQHIF*

mRNA from alignment at NODE_375_length_27991_cov_4.438244:16649..17911-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3316.t1 ID=Gcaud3316.t1|Name=Gcaud3316.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:16649..17911- (Gracilaria caudata M_176_S67 male)
ATGAGACAACACGCAGCTGACAATCTCTTTCAGAACATCCCACCGCTGTA
TCCATCTTCGCCTTTTCCATCAATTGACTACGTTGCAACACCATTTGCAG
AACTTCTTGACGCAATCGCTTCAATTATGATTCTGTGGACTACTTCAGCA
ATAGTGAATCGATTAATGACCATTCCATTCGGAAAAGACACTCGATCTAT
TGTGCTGAAACGAATGTTTGATCGTCTCATGAACCTCAGCTTTGCGTCTT
GTGGCCGTTTTAGAGCTCATTCACACTGCAAGAATTCGTTCGCCAGCCTA
CTGTTTAGGGTCATTTCAATATCATTCTTTGTGGTTCTTGGGGGCATGGA
GCTCCTTGTTATATTTTCTCAAACATATCAGCAGAAGACCAGAAGTCTGG
ATGTTTTGAATCTCAAGAGCCCTACCATCCAGATCCCTCAGAACGAGAGC
CAAAAGACAGGATTCTTTAAGGGATGTGTACCGCTGTTATCGGGAGATCG
TACCAGTATCAGTCTTGTGCTCACGCTATGCAATTATGAAGAGTTTGACT
ATGGAACAAGAGTTGCTCGACGAAACGGGTTTGAGTTTCAATTTAATTCT
TCTGATTGGCGATTCTTTGAAGTATATGAATCACAATCTTTCGTGGATTT
GTATAGCAGAATATCCGTAGAGATCAGGGATCCAAGACGCTCGGCGCTAT
ATTTTGCCAATATGACTCGTCTTGGATTCTCCATGACTCCGCCCAAACTG
GAATGGCTTTTGAGAAAGCTGAACGAAATCTGTGCCTCGTGCAATGCTAG
TGCGGACTTCATTAGCCCGGTGTTTTCTGTTATCCGTTCAGATATTAATC
CAATCGTAGACGAGACTAAAAGCGTGGATGTTGGTATTCTATTTGCGGAT
GAGGTGCAGTCAATGCTTCGCTTGTCAAATAGACAACTGAAAACCAAAGA
CTTCCTTGGCCACAATGGACAAGATGACGAAAGTAAGCAGGGTTTGCTCG
AAATGACTTCTGACAGGGTGAAGAGAGTGAGCGGATTGACGTTATGGATT
GTTCTTGCAGCACTTGCCATAATCAACCTTGTGACTAGTCGACTCATGAC
CGATGTGGACGACGACGTCAATGACATTGTCGCATCGGTACTGGCATGCC
CGCCGGGAACATCACTACTGGATTGCGATAACACAAGATTCTCAATCGTG
GATACACACCCTCCATCTCTTCAGCGTGAAATGGCTGATGAAACTGAACA
ACACATCTTCTAA

Coding sequence (CDS) from alignment at NODE_375_length_27991_cov_4.438244:16649..17911-

>Gcaud3316.t1 ID=Gcaud3316.t1|Name=Gcaud3316.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1263bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:16649..17911- (Gracilaria caudata M_176_S67 male)
ATGAGACAACACGCAGCTGACAATCTCTTTCAGAACATCCCACCGCTGTA
TCCATCTTCGCCTTTTCCATCAATTGACTACGTTGCAACACCATTTGCAG
AACTTCTTGACGCAATCGCTTCAATTATGATTCTGTGGACTACTTCAGCA
ATAGTGAATCGATTAATGACCATTCCATTCGGAAAAGACACTCGATCTAT
TGTGCTGAAACGAATGTTTGATCGTCTCATGAACCTCAGCTTTGCGTCTT
GTGGCCGTTTTAGAGCTCATTCACACTGCAAGAATTCGTTCGCCAGCCTA
CTGTTTAGGGTCATTTCAATATCATTCTTTGTGGTTCTTGGGGGCATGGA
GCTCCTTGTTATATTTTCTCAAACATATCAGCAGAAGACCAGAAGTCTGG
ATGTTTTGAATCTCAAGAGCCCTACCATCCAGATCCCTCAGAACGAGAGC
CAAAAGACAGGATTCTTTAAGGGATGTGTACCGCTGTTATCGGGAGATCG
TACCAGTATCAGTCTTGTGCTCACGCTATGCAATTATGAAGAGTTTGACT
ATGGAACAAGAGTTGCTCGACGAAACGGGTTTGAGTTTCAATTTAATTCT
TCTGATTGGCGATTCTTTGAAGTATATGAATCACAATCTTTCGTGGATTT
GTATAGCAGAATATCCGTAGAGATCAGGGATCCAAGACGCTCGGCGCTAT
ATTTTGCCAATATGACTCGTCTTGGATTCTCCATGACTCCGCCCAAACTG
GAATGGCTTTTGAGAAAGCTGAACGAAATCTGTGCCTCGTGCAATGCTAG
TGCGGACTTCATTAGCCCGGTGTTTTCTGTTATCCGTTCAGATATTAATC
CAATCGTAGACGAGACTAAAAGCGTGGATGTTGGTATTCTATTTGCGGAT
GAGGTGCAGTCAATGCTTCGCTTGTCAAATAGACAACTGAAAACCAAAGA
CTTCCTTGGCCACAATGGACAAGATGACGAAAGTAAGCAGGGTTTGCTCG
AAATGACTTCTGACAGGGTGAAGAGAGTGAGCGGATTGACGTTATGGATT
GTTCTTGCAGCACTTGCCATAATCAACCTTGTGACTAGTCGACTCATGAC
CGATGTGGACGACGACGTCAATGACATTGTCGCATCGGTACTGGCATGCC
CGCCGGGAACATCACTACTGGATTGCGATAACACAAGATTCTCAATCGTG
GATACACACCCTCCATCTCTTCAGCGTGAAATGGCTGATGAAACTGAACA
ACACATCTTCTAA