Gcaud3314.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3314.t1
Unique Name	Gcaud3314.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_375_length_27991_cov_4.438244	contig	NODE_375_length_27991_cov_4.438244:4293..5597 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1232410.KI421421_gene3516
Preferred name	cfa1
PFAMs	CMAS
Max annot lvl	28221\|Deltaproteobacteria
KEGG ko	ko:K00574,ko:K20238
Evalue	3.96e-136
EggNOG OGs	COG2230@1\|root,COG2230@2\|Bacteria,1MX3U@1224\|Proteobacteria,42PB7@68525\|delta/epsilon subdivisions,2WJX5@28221\|Deltaproteobacteria,43U6C@69541\|Desulfuromonadales
EC	2.1.1.317,2.1.1.79
Description	Mycolic acid cyclopropane synthetase
COG category	M
BiGG Reaction	iAF987.Gmet_2187
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3314	Gcaud3314	Gracilaria caudata M_176_S67 male	gene	NODE_375_length_27991_cov_4.438244 4293..5597 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3314.t1.start1	Gcaud3314.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_375_length_27991_cov_4.438244 4293..4295 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3314.t1.CDS1	Gcaud3314.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_375_length_27991_cov_4.438244 4293..5597 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3314.t1.exon1	Gcaud3314.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_375_length_27991_cov_4.438244 4293..5597 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3314.t1.stop1	Gcaud3314.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_375_length_27991_cov_4.438244 5595..5597 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3314.t1	Gcaud3314.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_375_length_27991_cov_4.438244 4293..5597 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_375_length_27991_cov_4.438244:4293..5597+
coding sequence from alignment at NODE_375_length_27991_cov_4.438244:4293..5597+

mRNA sequence

>Gcaud3314.t1 ID=Gcaud3314.t1|Name=Gcaud3314.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp
MGDNNTVAIRAPHVQQTLSFLDAFFHPYPNSNFAFRLWNGIMWQKPDADP
ARFVIVLNHPAALRRMFLPPSDARMALAYALGDFDIEGETMQALDLGRHI
TESWKWYDVIINGIRLLRLPSDDGKGSDHEARLEGALHSEDRDKKAIEFH
YSMSNEFYSLWLDKRMVYSCAYFHNRTDDIDTAQYNKLELICRKLRLKQG
ERLLDVGCGWGSLVIHAVTNYGVTAVGVTISEKQAEFAQARIQEAGIGDR
CKIEILDYRKVDESEPFDKIVSVGMIEHVGRNKLKTYFEKCFRLLRKGGV
FLNHGITLLKTRFKSVGEVEKAFINKYIFPDGDLQPLLFVLRHAAEAGFE
IRDVDCLREHYALTLSRWLSRLENHEEEAVKLMGRQTYRLWKMYLLCSEH
GFTKGLHTIYQTLLYKATDDFNTQLPLTRTDWYK*

spliced messenger RNA

>Gcaud3314.t1 ID=Gcaud3314.t1|Name=Gcaud3314.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:4293..5597+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGATAATAACACTGTGGCAATCAGGGCTCCGCATGTACAGCAAAC
GTTGTCGTTCCTGGATGCCTTTTTTCACCCTTATCCGAACTCCAATTTCG
CCTTCCGTCTCTGGAATGGCATCATGTGGCAGAAGCCTGATGCCGACCCC
GCCCGCTTTGTTATTGTACTCAACCATCCTGCTGCTCTTCGACGCATGTT
TTTGCCTCCGTCAGATGCACGCATGGCCTTGGCATATGCTCTTGGAGACT
TTGACATAGAAGGAGAGACTATGCAAGCGCTTGATCTGGGACGGCATATT
ACCGAGTCTTGGAAATGGTATGATGTAATCATTAATGGAATCCGTCTTTT
GCGCCTGCCGTCCGATGATGGCAAGGGTTCAGATCATGAAGCCCGTCTGG
AGGGAGCTCTCCATTCTGAAGATCGTGATAAGAAAGCCATCGAGTTTCAC
TACTCTATGTCCAACGAATTTTATTCATTGTGGTTGGACAAACGCATGGT
GTATTCGTGTGCTTACTTCCACAATCGCACGGACGATATTGACACGGCGC
AATACAATAAGCTTGAGTTGATCTGTCGCAAACTGCGGCTAAAGCAAGGC
GAACGTCTCCTTGATGTCGGCTGTGGCTGGGGTTCATTAGTGATCCACGC
TGTAACAAACTACGGTGTGACGGCCGTTGGTGTGACCATCAGCGAGAAAC
AAGCTGAATTCGCACAGGCTCGCATTCAAGAAGCCGGAATTGGTGATCGT
TGCAAGATCGAAATTCTGGATTATCGTAAGGTGGATGAGTCCGAACCGTT
TGACAAAATTGTGAGTGTGGGAATGATCGAGCACGTAGGTCGCAACAAGT
TAAAGACTTACTTCGAAAAATGTTTCCGCTTACTGCGAAAAGGGGGGGTG
TTCCTCAACCATGGCATCACGCTTTTGAAAACGAGATTCAAGAGCGTTGG
CGAAGTGGAAAAAGCGTTCATTAACAAATACATCTTTCCAGACGGTGACC
TTCAGCCGCTCCTATTCGTACTGCGGCACGCGGCCGAAGCCGGATTTGAG
ATTCGTGACGTGGATTGTCTGCGCGAGCATTACGCCCTGACGCTGAGCCG
CTGGCTCTCAAGATTGGAGAATCATGAAGAGGAAGCGGTGAAGTTGATGG
GGAGACAGACGTATCGCTTGTGGAAGATGTATCTGCTGTGCTCTGAGCAT
GGCTTTACCAAAGGACTGCATACCATTTATCAGACGCTACTGTACAAGGC
AACCGACGACTTCAACACGCAACTTCCGTTGACCAGAACAGACTGGTATA
AGTAG

protein sequence of Gcaud3314.t1

>Gcaud3314.t1 ID=Gcaud3314.t1|Name=Gcaud3314.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=435bp
MGDNNTVAIRAPHVQQTLSFLDAFFHPYPNSNFAFRLWNGIMWQKPDADP
ARFVIVLNHPAALRRMFLPPSDARMALAYALGDFDIEGETMQALDLGRHI
TESWKWYDVIINGIRLLRLPSDDGKGSDHEARLEGALHSEDRDKKAIEFH
YSMSNEFYSLWLDKRMVYSCAYFHNRTDDIDTAQYNKLELICRKLRLKQG
ERLLDVGCGWGSLVIHAVTNYGVTAVGVTISEKQAEFAQARIQEAGIGDR
CKIEILDYRKVDESEPFDKIVSVGMIEHVGRNKLKTYFEKCFRLLRKGGV
FLNHGITLLKTRFKSVGEVEKAFINKYIFPDGDLQPLLFVLRHAAEAGFE
IRDVDCLREHYALTLSRWLSRLENHEEEAVKLMGRQTYRLWKMYLLCSEH
GFTKGLHTIYQTLLYKATDDFNTQLPLTRTDWYK*

mRNA from alignment at NODE_375_length_27991_cov_4.438244:4293..5597+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3314.t1 ID=Gcaud3314.t1|Name=Gcaud3314.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:4293..5597+ (Gracilaria caudata M_176_S67 male)
ATGGGGGATAATAACACTGTGGCAATCAGGGCTCCGCATGTACAGCAAAC
GTTGTCGTTCCTGGATGCCTTTTTTCACCCTTATCCGAACTCCAATTTCG
CCTTCCGTCTCTGGAATGGCATCATGTGGCAGAAGCCTGATGCCGACCCC
GCCCGCTTTGTTATTGTACTCAACCATCCTGCTGCTCTTCGACGCATGTT
TTTGCCTCCGTCAGATGCACGCATGGCCTTGGCATATGCTCTTGGAGACT
TTGACATAGAAGGAGAGACTATGCAAGCGCTTGATCTGGGACGGCATATT
ACCGAGTCTTGGAAATGGTATGATGTAATCATTAATGGAATCCGTCTTTT
GCGCCTGCCGTCCGATGATGGCAAGGGTTCAGATCATGAAGCCCGTCTGG
AGGGAGCTCTCCATTCTGAAGATCGTGATAAGAAAGCCATCGAGTTTCAC
TACTCTATGTCCAACGAATTTTATTCATTGTGGTTGGACAAACGCATGGT
GTATTCGTGTGCTTACTTCCACAATCGCACGGACGATATTGACACGGCGC
AATACAATAAGCTTGAGTTGATCTGTCGCAAACTGCGGCTAAAGCAAGGC
GAACGTCTCCTTGATGTCGGCTGTGGCTGGGGTTCATTAGTGATCCACGC
TGTAACAAACTACGGTGTGACGGCCGTTGGTGTGACCATCAGCGAGAAAC
AAGCTGAATTCGCACAGGCTCGCATTCAAGAAGCCGGAATTGGTGATCGT
TGCAAGATCGAAATTCTGGATTATCGTAAGGTGGATGAGTCCGAACCGTT
TGACAAAATTGTGAGTGTGGGAATGATCGAGCACGTAGGTCGCAACAAGT
TAAAGACTTACTTCGAAAAATGTTTCCGCTTACTGCGAAAAGGGGGGGTG
TTCCTCAACCATGGCATCACGCTTTTGAAAACGAGATTCAAGAGCGTTGG
CGAAGTGGAAAAAGCGTTCATTAACAAATACATCTTTCCAGACGGTGACC
TTCAGCCGCTCCTATTCGTACTGCGGCACGCGGCCGAAGCCGGATTTGAG
ATTCGTGACGTGGATTGTCTGCGCGAGCATTACGCCCTGACGCTGAGCCG
CTGGCTCTCAAGATTGGAGAATCATGAAGAGGAAGCGGTGAAGTTGATGG
GGAGACAGACGTATCGCTTGTGGAAGATGTATCTGCTGTGCTCTGAGCAT
GGCTTTACCAAAGGACTGCATACCATTTATCAGACGCTACTGTACAAGGC
AACCGACGACTTCAACACGCAACTTCCGTTGACCAGAACAGACTGGTATA
AGTAG

Coding sequence (CDS) from alignment at NODE_375_length_27991_cov_4.438244:4293..5597+

>Gcaud3314.t1 ID=Gcaud3314.t1|Name=Gcaud3314.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1305bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:4293..5597+ (Gracilaria caudata M_176_S67 male)
ATGGGGGATAATAACACTGTGGCAATCAGGGCTCCGCATGTACAGCAAAC
GTTGTCGTTCCTGGATGCCTTTTTTCACCCTTATCCGAACTCCAATTTCG
CCTTCCGTCTCTGGAATGGCATCATGTGGCAGAAGCCTGATGCCGACCCC
GCCCGCTTTGTTATTGTACTCAACCATCCTGCTGCTCTTCGACGCATGTT
TTTGCCTCCGTCAGATGCACGCATGGCCTTGGCATATGCTCTTGGAGACT
TTGACATAGAAGGAGAGACTATGCAAGCGCTTGATCTGGGACGGCATATT
ACCGAGTCTTGGAAATGGTATGATGTAATCATTAATGGAATCCGTCTTTT
GCGCCTGCCGTCCGATGATGGCAAGGGTTCAGATCATGAAGCCCGTCTGG
AGGGAGCTCTCCATTCTGAAGATCGTGATAAGAAAGCCATCGAGTTTCAC
TACTCTATGTCCAACGAATTTTATTCATTGTGGTTGGACAAACGCATGGT
GTATTCGTGTGCTTACTTCCACAATCGCACGGACGATATTGACACGGCGC
AATACAATAAGCTTGAGTTGATCTGTCGCAAACTGCGGCTAAAGCAAGGC
GAACGTCTCCTTGATGTCGGCTGTGGCTGGGGTTCATTAGTGATCCACGC
TGTAACAAACTACGGTGTGACGGCCGTTGGTGTGACCATCAGCGAGAAAC
AAGCTGAATTCGCACAGGCTCGCATTCAAGAAGCCGGAATTGGTGATCGT
TGCAAGATCGAAATTCTGGATTATCGTAAGGTGGATGAGTCCGAACCGTT
TGACAAAATTGTGAGTGTGGGAATGATCGAGCACGTAGGTCGCAACAAGT
TAAAGACTTACTTCGAAAAATGTTTCCGCTTACTGCGAAAAGGGGGGGTG
TTCCTCAACCATGGCATCACGCTTTTGAAAACGAGATTCAAGAGCGTTGG
CGAAGTGGAAAAAGCGTTCATTAACAAATACATCTTTCCAGACGGTGACC
TTCAGCCGCTCCTATTCGTACTGCGGCACGCGGCCGAAGCCGGATTTGAG
ATTCGTGACGTGGATTGTCTGCGCGAGCATTACGCCCTGACGCTGAGCCG
CTGGCTCTCAAGATTGGAGAATCATGAAGAGGAAGCGGTGAAGTTGATGG
GGAGACAGACGTATCGCTTGTGGAAGATGTATCTGCTGTGCTCTGAGCAT
GGCTTTACCAAAGGACTGCATACCATTTATCAGACGCTACTGTACAAGGC
AACCGACGACTTCAACACGCAACTTCCGTTGACCAGAACAGACTGGTATA
AGTAG