Gcaud3312.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3312.t1
Unique Name	Gcaud3312.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_505_length_23477_cov_5.081245	contig	NODE_505_length_23477_cov_5.081245:22473..23477 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705903.1
Preferred name	RNR2
PFAMs	Ribonuc_red_sm
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00613,RC01003
KEGG ko	ko:K10808
KEGG Reaction	R02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathway	ko00230,ko00240,ko00480,ko00983,ko01100,ko04115,map00230,map00240,map00480,map00983,map01100,map04115
KEGG Module	M00053
GOs	GO:0003674,GO:0003824,GO:0004748,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009215,GO:0009216,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0032991,GO:0034641,GO:0034654,GO:0042278,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046131,GO:0046385,GO:0046483,GO:0046704,GO:0051063,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072521,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
Evalue	1.86e-172
EggNOG OGs	COG1678@1\|root,KOG1567@2759\|Eukaryota
EC	1.17.4.1
Description	ribonucleoside-diphosphate reductase activity
COG category	K
BiGG Reaction	iMM904.YGR180C,iMM904.YJL026W,iND750.YGR180C,iND750.YJL026W
BRITE	ko00000,ko00001,ko00002,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3312	Gcaud3312	Gracilaria caudata M_176_S67 male	gene	NODE_505_length_23477_cov_5.081245 22473..23477 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3312.t1.stop1	Gcaud3312.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_505_length_23477_cov_5.081245 22473..22475 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3312.t1.CDS1	Gcaud3312.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_505_length_23477_cov_5.081245 22473..23477 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3312.t1.exon1	Gcaud3312.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_505_length_23477_cov_5.081245 22473..23477 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3312.t1	Gcaud3312.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_505_length_23477_cov_5.081245 22473..23477 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_505_length_23477_cov_5.081245:22473..23477-
coding sequence from alignment at NODE_505_length_23477_cov_5.081245:22473..23477-

mRNA sequence

>Gcaud3312.t1 ID=Gcaud3312.t1|Name=Gcaud3312.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=335bp
EQKPFIQPASDVPPIFAAEAADRYTLFPIRHPKIWDLYKKHQAAFWTAEE
IDLSADLQDWNSLTHAERHFITHVLAFFAASDGIVLENLIERFCNDVQLP
EARCFYGFQAAMENIHTETYSLLLDTFIKDPEEKTRLFRAIDEIPCVKKK
ADWAIRWISSSARFAERLVAFAAVEGIFFSGSFCAIFYLKKRGLMPGLTF
SNELISRDEGLHCDHACLLYSMIPDEQRLSEKRIHEIICDAVECEKEFVS
DSLPVDLIGMNAELMREYIAYCADRLLLSLGYNKVYHASQPFDWMELISI
QGKTNFFERRVGEYQKAGVTASRAENTFSLDCDF*

spliced messenger RNA

>Gcaud3312.t1 ID=Gcaud3312.t1|Name=Gcaud3312.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_505_length_23477_cov_5.081245:22473..23477- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GAGCAGAAGCCTTTCATTCAGCCGGCTTCTGATGTTCCGCCTATCTTTGC
CGCTGAGGCTGCCGATCGATACACTCTGTTTCCCATCCGTCATCCCAAGA
TCTGGGACCTGTACAAAAAGCACCAGGCCGCCTTCTGGACCGCAGAGGAG
ATTGATTTATCCGCTGATCTTCAGGATTGGAACTCTCTCACACATGCTGA
GCGACATTTCATCACGCATGTGCTTGCTTTCTTTGCTGCTAGTGATGGAA
TAGTGCTTGAGAATCTCATCGAACGTTTTTGTAATGACGTGCAGTTACCG
GAGGCTCGTTGTTTCTACGGCTTCCAAGCCGCCATGGAAAACATTCATAC
TGAAACCTACTCACTCTTGTTAGATACTTTTATCAAGGATCCTGAGGAGA
AGACCCGTTTATTCCGAGCTATTGACGAGATTCCATGCGTCAAGAAGAAG
GCTGACTGGGCCATTCGATGGATTTCTTCTTCAGCAAGGTTTGCAGAGAG
GCTGGTGGCTTTTGCCGCTGTGGAGGGGATTTTCTTTTCTGGCTCATTCT
GTGCAATCTTCTACTTGAAGAAACGTGGCCTTATGCCTGGTCTTACCTTC
TCCAACGAGCTCATTTCTAGAGATGAAGGTCTGCACTGTGATCATGCCTG
TCTGCTTTACTCTATGATTCCAGATGAACAACGTCTATCAGAGAAGCGCA
TTCACGAGATCATCTGTGACGCTGTCGAGTGCGAGAAGGAATTCGTAAGT
GATTCGTTGCCAGTCGATCTTATTGGAATGAACGCAGAGCTCATGAGGGA
GTACATTGCTTATTGCGCTGATCGACTCTTGCTTTCGCTTGGATATAATA
AGGTGTATCATGCGTCTCAACCGTTTGATTGGATGGAATTGATATCCATT
CAGGGCAAGACAAACTTTTTTGAACGGAGAGTGGGAGAATATCAGAAAGC
CGGTGTGACTGCATCTCGTGCTGAAAATACTTTTTCGCTGGACTGCGATT
TCTGA

protein sequence of Gcaud3312.t1

>Gcaud3312.t1 ID=Gcaud3312.t1|Name=Gcaud3312.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
EQKPFIQPASDVPPIFAAEAADRYTLFPIRHPKIWDLYKKHQAAFWTAEE
IDLSADLQDWNSLTHAERHFITHVLAFFAASDGIVLENLIERFCNDVQLP
EARCFYGFQAAMENIHTETYSLLLDTFIKDPEEKTRLFRAIDEIPCVKKK
ADWAIRWISSSARFAERLVAFAAVEGIFFSGSFCAIFYLKKRGLMPGLTF
SNELISRDEGLHCDHACLLYSMIPDEQRLSEKRIHEIICDAVECEKEFVS
DSLPVDLIGMNAELMREYIAYCADRLLLSLGYNKVYHASQPFDWMELISI
QGKTNFFERRVGEYQKAGVTASRAENTFSLDCDF*

mRNA from alignment at NODE_505_length_23477_cov_5.081245:22473..23477-

Legend: polypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3312.t1 ID=Gcaud3312.t1|Name=Gcaud3312.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_505_length_23477_cov_5.081245:22473..23477- (Gracilaria caudata M_176_S67 male)
GAGCAGAAGCCTTTCATTCAGCCGGCTTCTGATGTTCCGCCTATCTTTGC
CGCTGAGGCTGCCGATCGATACACTCTGTTTCCCATCCGTCATCCCAAGA
TCTGGGACCTGTACAAAAAGCACCAGGCCGCCTTCTGGACCGCAGAGGAG
ATTGATTTATCCGCTGATCTTCAGGATTGGAACTCTCTCACACATGCTGA
GCGACATTTCATCACGCATGTGCTTGCTTTCTTTGCTGCTAGTGATGGAA
TAGTGCTTGAGAATCTCATCGAACGTTTTTGTAATGACGTGCAGTTACCG
GAGGCTCGTTGTTTCTACGGCTTCCAAGCCGCCATGGAAAACATTCATAC
TGAAACCTACTCACTCTTGTTAGATACTTTTATCAAGGATCCTGAGGAGA
AGACCCGTTTATTCCGAGCTATTGACGAGATTCCATGCGTCAAGAAGAAG
GCTGACTGGGCCATTCGATGGATTTCTTCTTCAGCAAGGTTTGCAGAGAG
GCTGGTGGCTTTTGCCGCTGTGGAGGGGATTTTCTTTTCTGGCTCATTCT
GTGCAATCTTCTACTTGAAGAAACGTGGCCTTATGCCTGGTCTTACCTTC
TCCAACGAGCTCATTTCTAGAGATGAAGGTCTGCACTGTGATCATGCCTG
TCTGCTTTACTCTATGATTCCAGATGAACAACGTCTATCAGAGAAGCGCA
TTCACGAGATCATCTGTGACGCTGTCGAGTGCGAGAAGGAATTCGTAAGT
GATTCGTTGCCAGTCGATCTTATTGGAATGAACGCAGAGCTCATGAGGGA
GTACATTGCTTATTGCGCTGATCGACTCTTGCTTTCGCTTGGATATAATA
AGGTGTATCATGCGTCTCAACCGTTTGATTGGATGGAATTGATATCCATT
CAGGGCAAGACAAACTTTTTTGAACGGAGAGTGGGAGAATATCAGAAAGC
CGGTGTGACTGCATCTCGTGCTGAAAATACTTTTTCGCTGGACTGCGATT
TCTGA

Coding sequence (CDS) from alignment at NODE_505_length_23477_cov_5.081245:22473..23477-

>Gcaud3312.t1 ID=Gcaud3312.t1|Name=Gcaud3312.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1005bp|location=Sequence derived from alignment at NODE_505_length_23477_cov_5.081245:22473..23477- (Gracilaria caudata M_176_S67 male)
GAGCAGAAGCCTTTCATTCAGCCGGCTTCTGATGTTCCGCCTATCTTTGC
CGCTGAGGCTGCCGATCGATACACTCTGTTTCCCATCCGTCATCCCAAGA
TCTGGGACCTGTACAAAAAGCACCAGGCCGCCTTCTGGACCGCAGAGGAG
ATTGATTTATCCGCTGATCTTCAGGATTGGAACTCTCTCACACATGCTGA
GCGACATTTCATCACGCATGTGCTTGCTTTCTTTGCTGCTAGTGATGGAA
TAGTGCTTGAGAATCTCATCGAACGTTTTTGTAATGACGTGCAGTTACCG
GAGGCTCGTTGTTTCTACGGCTTCCAAGCCGCCATGGAAAACATTCATAC
TGAAACCTACTCACTCTTGTTAGATACTTTTATCAAGGATCCTGAGGAGA
AGACCCGTTTATTCCGAGCTATTGACGAGATTCCATGCGTCAAGAAGAAG
GCTGACTGGGCCATTCGATGGATTTCTTCTTCAGCAAGGTTTGCAGAGAG
GCTGGTGGCTTTTGCCGCTGTGGAGGGGATTTTCTTTTCTGGCTCATTCT
GTGCAATCTTCTACTTGAAGAAACGTGGCCTTATGCCTGGTCTTACCTTC
TCCAACGAGCTCATTTCTAGAGATGAAGGTCTGCACTGTGATCATGCCTG
TCTGCTTTACTCTATGATTCCAGATGAACAACGTCTATCAGAGAAGCGCA
TTCACGAGATCATCTGTGACGCTGTCGAGTGCGAGAAGGAATTCGTAAGT
GATTCGTTGCCAGTCGATCTTATTGGAATGAACGCAGAGCTCATGAGGGA
GTACATTGCTTATTGCGCTGATCGACTCTTGCTTTCGCTTGGATATAATA
AGGTGTATCATGCGTCTCAACCGTTTGATTGGATGGAATTGATATCCATT
CAGGGCAAGACAAACTTTTTTGAACGGAGAGTGGGAGAATATCAGAAAGC
CGGTGTGACTGCATCTCGTGCTGAAAATACTTTTTCGCTGGACTGCGATT
TCTGA