Gcaud3310.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3310.t1
Unique Name	Gcaud3310.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	386

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_505_length_23477_cov_5.081245	contig	NODE_505_length_23477_cov_5.081245:19607..20764 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FVS7
PFAMs	DUF1350
Max annot lvl	2759\|Eukaryota
Evalue	5.2e-29
EggNOG OGs	COG1084@1\|root,2QSXN@2759\|Eukaryota
Description	Protein of unknown function (DUF1350)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3310	Gcaud3310	Gracilaria caudata M_176_S67 male	gene	NODE_505_length_23477_cov_5.081245 19607..20764 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3310.t1.stop1	Gcaud3310.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_505_length_23477_cov_5.081245 19607..19609 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3310.t1.CDS1	Gcaud3310.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_505_length_23477_cov_5.081245 19607..20764 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3310.t1.exon1	Gcaud3310.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_505_length_23477_cov_5.081245 19607..20764 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3310.t1.start1	Gcaud3310.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_505_length_23477_cov_5.081245 20762..20764 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3310.t1	Gcaud3310.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_505_length_23477_cov_5.081245 19607..20764 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_505_length_23477_cov_5.081245:19607..20764-
coding sequence from alignment at NODE_505_length_23477_cov_5.081245:19607..20764-

mRNA sequence

>Gcaud3310.t1 ID=Gcaud3310.t1|Name=Gcaud3310.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=386bp
MFCLYQSPTAFTAFSVCSPLPFRVPSSQTSRFSTQSRPLFCYLRTPSRAT
AAAAAGDRSDGRVSPSDHTNSSPPPPGNSSPEWQSRPGVDLLLPDDPEVI
LSFTGGFAAGLAPRTTYGAFLRRLSEVLNAAIVAYKQSSPSADHLDLAQK
SAGATGVIAAEIRRTSGRQIPLVGIGHSLGAKCLLLAGCQPDARQACPHS
ANIFISFNNSTRDSALPWRPSDSKAAAQALSSVSAFLSSLDVSQFGMPDA
EQTMKNVLGTVSSLGASLSTEFRPTPEETIALAGARYSISHNLVISFDDD
SLDHSEEIENVLRARLGPKSVVRRTLPGTHLTPMTPDIGADFRATGFSAV
DDGVQKAAFRVAKELDQTVAVIAAFVKLQSLIQNQ*

spliced messenger RNA

>Gcaud3310.t1 ID=Gcaud3310.t1|Name=Gcaud3310.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at NODE_505_length_23477_cov_5.081245:19607..20764- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTGTTTGTATCAATCTCCCACAGCGTTCACAGCCTTCTCAGTTTG
TTCTCCTCTTCCCTTCAGAGTTCCCTCTTCGCAGACGTCGAGGTTTTCAA
CGCAGTCCCGTCCGCTGTTTTGCTATCTGCGAACGCCGTCTCGTGCCACA
GCAGCTGCCGCAGCCGGAGATAGGAGCGACGGCCGTGTGTCACCGTCGGA
CCACACAAACTCTTCTCCCCCGCCTCCAGGAAATTCCAGTCCAGAATGGC
AGTCACGTCCTGGCGTAGACCTCCTTTTACCTGATGACCCCGAGGTCATT
CTGTCCTTTACCGGAGGCTTCGCTGCCGGACTGGCGCCACGTACCACTTA
TGGTGCCTTTCTCCGCCGTCTTTCGGAGGTGCTCAATGCCGCTATCGTTG
CCTACAAACAATCTTCCCCCAGCGCTGACCACCTCGATCTCGCTCAAAAG
TCAGCAGGTGCTACGGGTGTGATTGCTGCTGAAATTCGCCGCACTTCCGG
ACGCCAAATTCCGCTAGTTGGCATTGGGCACTCTCTTGGTGCGAAGTGTC
TACTTCTTGCAGGATGCCAACCTGATGCGCGACAAGCATGTCCACATTCT
GCCAATATCTTCATTAGTTTTAATAACTCTACGCGCGATTCAGCGCTACC
ATGGCGTCCATCCGACTCGAAGGCGGCAGCCCAAGCGTTATCAAGCGTTT
CAGCCTTTCTTTCTAGTCTTGATGTGTCGCAGTTTGGCATGCCAGACGCA
GAACAAACGATGAAGAACGTACTTGGCACTGTTTCATCACTCGGGGCATC
TCTGAGCACAGAATTCCGTCCAACTCCCGAGGAAACAATCGCTCTAGCCG
GTGCACGATATTCAATATCTCATAACCTTGTGATTTCATTCGACGACGAT
TCCCTTGATCACTCAGAGGAGATAGAGAATGTGTTGCGCGCGAGACTGGG
ACCGAAATCAGTTGTGAGACGTACATTGCCGGGGACGCATCTTACGCCCA
TGACTCCAGACATTGGAGCAGACTTCAGAGCAACGGGATTCTCTGCTGTG
GACGACGGTGTCCAGAAAGCTGCTTTCCGTGTTGCAAAGGAGCTGGACCA
AACTGTTGCTGTGATTGCAGCGTTCGTGAAACTTCAGTCGCTGATACAAA
ATCAATGA

protein sequence of Gcaud3310.t1

>Gcaud3310.t1 ID=Gcaud3310.t1|Name=Gcaud3310.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=386bp
MFCLYQSPTAFTAFSVCSPLPFRVPSSQTSRFSTQSRPLFCYLRTPSRAT
AAAAAGDRSDGRVSPSDHTNSSPPPPGNSSPEWQSRPGVDLLLPDDPEVI
LSFTGGFAAGLAPRTTYGAFLRRLSEVLNAAIVAYKQSSPSADHLDLAQK
SAGATGVIAAEIRRTSGRQIPLVGIGHSLGAKCLLLAGCQPDARQACPHS
ANIFISFNNSTRDSALPWRPSDSKAAAQALSSVSAFLSSLDVSQFGMPDA
EQTMKNVLGTVSSLGASLSTEFRPTPEETIALAGARYSISHNLVISFDDD
SLDHSEEIENVLRARLGPKSVVRRTLPGTHLTPMTPDIGADFRATGFSAV
DDGVQKAAFRVAKELDQTVAVIAAFVKLQSLIQNQ*

mRNA from alignment at NODE_505_length_23477_cov_5.081245:19607..20764-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3310.t1 ID=Gcaud3310.t1|Name=Gcaud3310.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at NODE_505_length_23477_cov_5.081245:19607..20764- (Gracilaria caudata M_176_S67 male)
ATGTTTTGTTTGTATCAATCTCCCACAGCGTTCACAGCCTTCTCAGTTTG
TTCTCCTCTTCCCTTCAGAGTTCCCTCTTCGCAGACGTCGAGGTTTTCAA
CGCAGTCCCGTCCGCTGTTTTGCTATCTGCGAACGCCGTCTCGTGCCACA
GCAGCTGCCGCAGCCGGAGATAGGAGCGACGGCCGTGTGTCACCGTCGGA
CCACACAAACTCTTCTCCCCCGCCTCCAGGAAATTCCAGTCCAGAATGGC
AGTCACGTCCTGGCGTAGACCTCCTTTTACCTGATGACCCCGAGGTCATT
CTGTCCTTTACCGGAGGCTTCGCTGCCGGACTGGCGCCACGTACCACTTA
TGGTGCCTTTCTCCGCCGTCTTTCGGAGGTGCTCAATGCCGCTATCGTTG
CCTACAAACAATCTTCCCCCAGCGCTGACCACCTCGATCTCGCTCAAAAG
TCAGCAGGTGCTACGGGTGTGATTGCTGCTGAAATTCGCCGCACTTCCGG
ACGCCAAATTCCGCTAGTTGGCATTGGGCACTCTCTTGGTGCGAAGTGTC
TACTTCTTGCAGGATGCCAACCTGATGCGCGACAAGCATGTCCACATTCT
GCCAATATCTTCATTAGTTTTAATAACTCTACGCGCGATTCAGCGCTACC
ATGGCGTCCATCCGACTCGAAGGCGGCAGCCCAAGCGTTATCAAGCGTTT
CAGCCTTTCTTTCTAGTCTTGATGTGTCGCAGTTTGGCATGCCAGACGCA
GAACAAACGATGAAGAACGTACTTGGCACTGTTTCATCACTCGGGGCATC
TCTGAGCACAGAATTCCGTCCAACTCCCGAGGAAACAATCGCTCTAGCCG
GTGCACGATATTCAATATCTCATAACCTTGTGATTTCATTCGACGACGAT
TCCCTTGATCACTCAGAGGAGATAGAGAATGTGTTGCGCGCGAGACTGGG
ACCGAAATCAGTTGTGAGACGTACATTGCCGGGGACGCATCTTACGCCCA
TGACTCCAGACATTGGAGCAGACTTCAGAGCAACGGGATTCTCTGCTGTG
GACGACGGTGTCCAGAAAGCTGCTTTCCGTGTTGCAAAGGAGCTGGACCA
AACTGTTGCTGTGATTGCAGCGTTCGTGAAACTTCAGTCGCTGATACAAA
ATCAATGA

Coding sequence (CDS) from alignment at NODE_505_length_23477_cov_5.081245:19607..20764-

>Gcaud3310.t1 ID=Gcaud3310.t1|Name=Gcaud3310.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1158bp|location=Sequence derived from alignment at NODE_505_length_23477_cov_5.081245:19607..20764- (Gracilaria caudata M_176_S67 male)
ATGTTTTGTTTGTATCAATCTCCCACAGCGTTCACAGCCTTCTCAGTTTG
TTCTCCTCTTCCCTTCAGAGTTCCCTCTTCGCAGACGTCGAGGTTTTCAA
CGCAGTCCCGTCCGCTGTTTTGCTATCTGCGAACGCCGTCTCGTGCCACA
GCAGCTGCCGCAGCCGGAGATAGGAGCGACGGCCGTGTGTCACCGTCGGA
CCACACAAACTCTTCTCCCCCGCCTCCAGGAAATTCCAGTCCAGAATGGC
AGTCACGTCCTGGCGTAGACCTCCTTTTACCTGATGACCCCGAGGTCATT
CTGTCCTTTACCGGAGGCTTCGCTGCCGGACTGGCGCCACGTACCACTTA
TGGTGCCTTTCTCCGCCGTCTTTCGGAGGTGCTCAATGCCGCTATCGTTG
CCTACAAACAATCTTCCCCCAGCGCTGACCACCTCGATCTCGCTCAAAAG
TCAGCAGGTGCTACGGGTGTGATTGCTGCTGAAATTCGCCGCACTTCCGG
ACGCCAAATTCCGCTAGTTGGCATTGGGCACTCTCTTGGTGCGAAGTGTC
TACTTCTTGCAGGATGCCAACCTGATGCGCGACAAGCATGTCCACATTCT
GCCAATATCTTCATTAGTTTTAATAACTCTACGCGCGATTCAGCGCTACC
ATGGCGTCCATCCGACTCGAAGGCGGCAGCCCAAGCGTTATCAAGCGTTT
CAGCCTTTCTTTCTAGTCTTGATGTGTCGCAGTTTGGCATGCCAGACGCA
GAACAAACGATGAAGAACGTACTTGGCACTGTTTCATCACTCGGGGCATC
TCTGAGCACAGAATTCCGTCCAACTCCCGAGGAAACAATCGCTCTAGCCG
GTGCACGATATTCAATATCTCATAACCTTGTGATTTCATTCGACGACGAT
TCCCTTGATCACTCAGAGGAGATAGAGAATGTGTTGCGCGCGAGACTGGG
ACCGAAATCAGTTGTGAGACGTACATTGCCGGGGACGCATCTTACGCCCA
TGACTCCAGACATTGGAGCAGACTTCAGAGCAACGGGATTCTCTGCTGTG
GACGACGGTGTCCAGAAAGCTGCTTTCCGTGTTGCAAAGGAGCTGGACCA
AACTGTTGCTGTGATTGCAGCGTTCGTGAAACTTCAGTCGCTGATACAAA
ATCAATGA