Gcaud3295.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3295.t1
Unique Name	Gcaud3295.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	439

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_84_length_54915_cov_4.457829	contig	NODE_84_length_54915_cov_4.457829:40198..41514 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3295	Gcaud3295	Gracilaria caudata M_176_S67 male	gene	NODE_84_length_54915_cov_4.457829 40198..41514 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3295.t1.stop1	Gcaud3295.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_84_length_54915_cov_4.457829 40198..40200 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3295.t1.CDS1	Gcaud3295.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_84_length_54915_cov_4.457829 40198..41514 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3295.t1.exon1	Gcaud3295.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_84_length_54915_cov_4.457829 40198..41514 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3295.t1.start1	Gcaud3295.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_84_length_54915_cov_4.457829 41512..41514 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3295.t1	Gcaud3295.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_84_length_54915_cov_4.457829 40198..41514 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_84_length_54915_cov_4.457829:40198..41514-
coding sequence from alignment at NODE_84_length_54915_cov_4.457829:40198..41514-

mRNA sequence

>Gcaud3295.t1 ID=Gcaud3295.t1|Name=Gcaud3295.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=439bp
MMSSNLRSRAVKFSQDNNYQLPSLQVQNRPLKLSADSYNALVVSVAAFVL
LLFGFYSLSLFSANHEIVGLHPPLSLHREVGDHFHKPSSRAGWNDHHYDA
PLEEQWQDPYGEEHHQYHDYYDQHQQIDGERYDAAHDDEKTRYEDYHHDH
YYEQQQHAHQPPHPDELKDHVVEDHATDDHPTTRHEHEHYEDVTPPHHHD
EHGYYDTQGHYHYYDEDHDEYGHYDDHYYDEHYDDHHYGHDAHHDVYHAD
EHHFADHHHSDHHPAEHHAGEQHRASEHHAGEHHAGEHHAGEHHSHEHHA
GEHHAGEHHAGEHHASEHHASEHHAGEHHAGEHREHHAAEHHAGEHQTTD
HHATEHHAGEHHAGDHYNPDHHATKHQRDDPNHAHQHSSNTEQNKQYERH
AHHQNSHQHEHNHYEKGEHADSEHDVHRHQVHFAPDDF*

spliced messenger RNA

>Gcaud3295.t1 ID=Gcaud3295.t1|Name=Gcaud3295.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:40198..41514- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCCTCCAATCTGCGTAGCCGTGCCGTCAAGTTCTCACAGGATAA
CAACTACCAACTGCCTTCCCTTCAAGTACAAAACCGACCGCTTAAGCTTT
CAGCCGATTCGTATAACGCTCTTGTGGTTTCCGTTGCCGCTTTTGTACTG
CTCTTGTTTGGCTTTTATTCCTTGTCCCTGTTCTCCGCAAACCATGAGAT
TGTAGGACTGCATCCTCCGCTCTCCTTACACAGAGAGGTTGGCGATCATT
TTCACAAGCCTTCGAGCCGAGCTGGTTGGAATGATCACCATTACGACGCT
CCTCTTGAGGAGCAATGGCAAGATCCCTATGGTGAAGAACACCATCAGTA
TCACGACTATTACGACCAGCATCAACAGATTGACGGAGAACGCTACGACG
CCGCCCATGATGATGAGAAGACTCGCTATGAAGACTACCACCATGATCAC
TACTACGAACAGCAACAACACGCTCATCAGCCGCCACATCCTGATGAGTT
GAAAGACCACGTCGTTGAGGACCACGCCACCGATGACCATCCCACCACGC
GACATGAACATGAGCACTACGAAGACGTTACTCCACCGCATCATCACGAC
GAGCATGGCTACTACGATACTCAAGGACATTATCATTACTATGATGAGGA
TCACGACGAATACGGTCACTACGATGATCATTACTATGACGAACATTACG
ACGACCATCACTATGGCCATGACGCACATCATGATGTGTACCATGCTGAT
GAACATCACTTCGCGGATCATCATCACTCGGATCACCACCCTGCTGAACA
CCATGCGGGCGAGCAGCATCGCGCGTCAGAACATCATGCAGGAGAGCATC
ATGCCGGTGAGCACCACGCCGGTGAGCACCACTCGCACGAACATCACGCG
GGCGAACATCACGCGGGCGAGCACCATGCGGGGGAGCACCATGCGAGTGA
ACACCATGCGAGCGAACACCATGCGGGCGAACACCATGCGGGCGAACACC
GTGAGCACCACGCGGCCGAGCACCATGCAGGTGAGCATCAAACAACAGAC
CATCATGCGACAGAGCACCATGCTGGAGAGCATCACGCGGGGGATCATTA
CAACCCTGACCATCATGCAACCAAGCACCAACGAGATGATCCCAACCACG
CTCACCAGCATTCTAGCAACACCGAACAGAACAAACAGTATGAACGTCAC
GCCCATCATCAAAATTCACATCAGCACGAACACAATCACTACGAGAAGGG
AGAGCATGCCGATTCCGAACATGACGTTCACAGACATCAAGTTCATTTTG
CGCCAGATGATTTTTAA

protein sequence of Gcaud3295.t1

>Gcaud3295.t1 ID=Gcaud3295.t1|Name=Gcaud3295.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=439bp
MMSSNLRSRAVKFSQDNNYQLPSLQVQNRPLKLSADSYNALVVSVAAFVL
LLFGFYSLSLFSANHEIVGLHPPLSLHREVGDHFHKPSSRAGWNDHHYDA
PLEEQWQDPYGEEHHQYHDYYDQHQQIDGERYDAAHDDEKTRYEDYHHDH
YYEQQQHAHQPPHPDELKDHVVEDHATDDHPTTRHEHEHYEDVTPPHHHD
EHGYYDTQGHYHYYDEDHDEYGHYDDHYYDEHYDDHHYGHDAHHDVYHAD
EHHFADHHHSDHHPAEHHAGEQHRASEHHAGEHHAGEHHAGEHHSHEHHA
GEHHAGEHHAGEHHASEHHASEHHAGEHHAGEHREHHAAEHHAGEHQTTD
HHATEHHAGEHHAGDHYNPDHHATKHQRDDPNHAHQHSSNTEQNKQYERH
AHHQNSHQHEHNHYEKGEHADSEHDVHRHQVHFAPDDF*

mRNA from alignment at NODE_84_length_54915_cov_4.457829:40198..41514-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3295.t1 ID=Gcaud3295.t1|Name=Gcaud3295.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:40198..41514- (Gracilaria caudata M_176_S67 male)
ATGATGTCCTCCAATCTGCGTAGCCGTGCCGTCAAGTTCTCACAGGATAA
CAACTACCAACTGCCTTCCCTTCAAGTACAAAACCGACCGCTTAAGCTTT
CAGCCGATTCGTATAACGCTCTTGTGGTTTCCGTTGCCGCTTTTGTACTG
CTCTTGTTTGGCTTTTATTCCTTGTCCCTGTTCTCCGCAAACCATGAGAT
TGTAGGACTGCATCCTCCGCTCTCCTTACACAGAGAGGTTGGCGATCATT
TTCACAAGCCTTCGAGCCGAGCTGGTTGGAATGATCACCATTACGACGCT
CCTCTTGAGGAGCAATGGCAAGATCCCTATGGTGAAGAACACCATCAGTA
TCACGACTATTACGACCAGCATCAACAGATTGACGGAGAACGCTACGACG
CCGCCCATGATGATGAGAAGACTCGCTATGAAGACTACCACCATGATCAC
TACTACGAACAGCAACAACACGCTCATCAGCCGCCACATCCTGATGAGTT
GAAAGACCACGTCGTTGAGGACCACGCCACCGATGACCATCCCACCACGC
GACATGAACATGAGCACTACGAAGACGTTACTCCACCGCATCATCACGAC
GAGCATGGCTACTACGATACTCAAGGACATTATCATTACTATGATGAGGA
TCACGACGAATACGGTCACTACGATGATCATTACTATGACGAACATTACG
ACGACCATCACTATGGCCATGACGCACATCATGATGTGTACCATGCTGAT
GAACATCACTTCGCGGATCATCATCACTCGGATCACCACCCTGCTGAACA
CCATGCGGGCGAGCAGCATCGCGCGTCAGAACATCATGCAGGAGAGCATC
ATGCCGGTGAGCACCACGCCGGTGAGCACCACTCGCACGAACATCACGCG
GGCGAACATCACGCGGGCGAGCACCATGCGGGGGAGCACCATGCGAGTGA
ACACCATGCGAGCGAACACCATGCGGGCGAACACCATGCGGGCGAACACC
GTGAGCACCACGCGGCCGAGCACCATGCAGGTGAGCATCAAACAACAGAC
CATCATGCGACAGAGCACCATGCTGGAGAGCATCACGCGGGGGATCATTA
CAACCCTGACCATCATGCAACCAAGCACCAACGAGATGATCCCAACCACG
CTCACCAGCATTCTAGCAACACCGAACAGAACAAACAGTATGAACGTCAC
GCCCATCATCAAAATTCACATCAGCACGAACACAATCACTACGAGAAGGG
AGAGCATGCCGATTCCGAACATGACGTTCACAGACATCAAGTTCATTTTG
CGCCAGATGATTTTTAA

Coding sequence (CDS) from alignment at NODE_84_length_54915_cov_4.457829:40198..41514-

>Gcaud3295.t1 ID=Gcaud3295.t1|Name=Gcaud3295.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1317bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:40198..41514- (Gracilaria caudata M_176_S67 male)
ATGATGTCCTCCAATCTGCGTAGCCGTGCCGTCAAGTTCTCACAGGATAA
CAACTACCAACTGCCTTCCCTTCAAGTACAAAACCGACCGCTTAAGCTTT
CAGCCGATTCGTATAACGCTCTTGTGGTTTCCGTTGCCGCTTTTGTACTG
CTCTTGTTTGGCTTTTATTCCTTGTCCCTGTTCTCCGCAAACCATGAGAT
TGTAGGACTGCATCCTCCGCTCTCCTTACACAGAGAGGTTGGCGATCATT
TTCACAAGCCTTCGAGCCGAGCTGGTTGGAATGATCACCATTACGACGCT
CCTCTTGAGGAGCAATGGCAAGATCCCTATGGTGAAGAACACCATCAGTA
TCACGACTATTACGACCAGCATCAACAGATTGACGGAGAACGCTACGACG
CCGCCCATGATGATGAGAAGACTCGCTATGAAGACTACCACCATGATCAC
TACTACGAACAGCAACAACACGCTCATCAGCCGCCACATCCTGATGAGTT
GAAAGACCACGTCGTTGAGGACCACGCCACCGATGACCATCCCACCACGC
GACATGAACATGAGCACTACGAAGACGTTACTCCACCGCATCATCACGAC
GAGCATGGCTACTACGATACTCAAGGACATTATCATTACTATGATGAGGA
TCACGACGAATACGGTCACTACGATGATCATTACTATGACGAACATTACG
ACGACCATCACTATGGCCATGACGCACATCATGATGTGTACCATGCTGAT
GAACATCACTTCGCGGATCATCATCACTCGGATCACCACCCTGCTGAACA
CCATGCGGGCGAGCAGCATCGCGCGTCAGAACATCATGCAGGAGAGCATC
ATGCCGGTGAGCACCACGCCGGTGAGCACCACTCGCACGAACATCACGCG
GGCGAACATCACGCGGGCGAGCACCATGCGGGGGAGCACCATGCGAGTGA
ACACCATGCGAGCGAACACCATGCGGGCGAACACCATGCGGGCGAACACC
GTGAGCACCACGCGGCCGAGCACCATGCAGGTGAGCATCAAACAACAGAC
CATCATGCGACAGAGCACCATGCTGGAGAGCATCACGCGGGGGATCATTA
CAACCCTGACCATCATGCAACCAAGCACCAACGAGATGATCCCAACCACG
CTCACCAGCATTCTAGCAACACCGAACAGAACAAACAGTATGAACGTCAC
GCCCATCATCAAAATTCACATCAGCACGAACACAATCACTACGAGAAGGG
AGAGCATGCCGATTCCGAACATGACGTTCACAGACATCAAGTTCATTTTG
CGCCAGATGATTTTTAA