Gcaud3285.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3285.t1
Unique Name	Gcaud3285.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	753

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_84_length_54915_cov_4.457829	contig	NODE_84_length_54915_cov_4.457829:21491..23749 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1123242.JH636434_gene3418
PFAMs	Fe-ADH
Max annot lvl	203682\|Planctomycetes
Evalue	3.34e-07
EggNOG OGs	COG1454@1\|root,COG1454@2\|Bacteria,2IY9A@203682\|Planctomycetes
Description	Alcohol dehydrogenase class IV
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3285	Gcaud3285	Gracilaria caudata M_176_S67 male	gene	NODE_84_length_54915_cov_4.457829 21491..23749 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3285.t1.stop1	Gcaud3285.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_84_length_54915_cov_4.457829 21491..21493 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3285.t1.CDS1	Gcaud3285.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_84_length_54915_cov_4.457829 21491..23749 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3285.t1.exon1	Gcaud3285.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_84_length_54915_cov_4.457829 21491..23749 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3285.t1.start1	Gcaud3285.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_84_length_54915_cov_4.457829 23747..23749 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3285.t1	Gcaud3285.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_84_length_54915_cov_4.457829 21491..23749 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_84_length_54915_cov_4.457829:21491..23749-
coding sequence from alignment at NODE_84_length_54915_cov_4.457829:21491..23749-

mRNA sequence

>Gcaud3285.t1 ID=Gcaud3285.t1|Name=Gcaud3285.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=753bp
MSSGEKAIVNKAQYNDQQNFSGILPQGAYTVLMRVKMKEKLNATEQKIIL
AEYARNSCAEQGVIRCDVLFRVNKLGIAKDDFYEIWISFADSRAYMEHER
TSHAAKLRLCLEDPHGGDSSKLLTKLSHSVSLLRLVRPEITDWVSAFDFE
VQSTSPVTEKIGGSLKVKDDSDQIRRSLDMLISSVGLEDVVVLVATASAF
SIESTRSLRRECEEYLTDLEKNPGIVRTGVLVDKNDPYRIIMMTVHDSSD
IAGACFDMELASDYVTDDGWTVQRCHAVFPDKVGWERKLTEEDQRRFLGD
VIEERFEQLIDGPGALMKYDRGEAEDSKMRLLQGAGSFEMLKECIGSMTQ
ISVGVAKALLIGGWNQSRLHALLIQIEYDRYKDPFEIQWRFGPSVSSTEI
MTDHLRRTLLEVAEFCPDVIIGYGGGTVMDMTKLLGRLGNASKSDLETFL
NTIDGAAEADAAAIGLPITSRPLPVVLIPTTVGSGAEMTEWCIVAAQKEN
GSIRRLPLYFYDRPGTMRLVTEKTAIQESRLISPRRLQGIHASQGALELV
CLAIDDLIALEEHLDDQASKFAIRGLRQAYRVVMDARREPENASGHSRDP
LVEAKTLIGLATDGIGRPGVCVRLCLAILDSLVDGRLPTAFRQVLTRITI
AMVEECMDNRPEAGRRVFREILKATRHNYRRELVTDMLRKAEDCDVPLLP
MVGMVQRKTGDVARRVSRYLESDTLSPLETFLRQEHVLERILRRAIEQEY
EL*

spliced messenger RNA

>Gcaud3285.t1 ID=Gcaud3285.t1|Name=Gcaud3285.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:21491..23749- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCCGGAGAGAAGGCCATCGTCAACAAAGCTCAATACAATGACCA
ACAAAACTTCAGTGGTATATTGCCGCAGGGGGCATACACTGTGCTCATGC
GAGTGAAGATGAAAGAGAAATTGAATGCCACGGAGCAGAAAATCATTTTG
GCAGAGTATGCGCGGAATAGTTGTGCTGAGCAAGGAGTGATCCGCTGCGA
CGTTTTATTCCGAGTAAACAAGCTGGGGATCGCAAAGGATGACTTTTACG
AGATATGGATTTCATTTGCGGATTCTCGGGCGTACATGGAACACGAACGA
ACATCCCATGCAGCCAAACTGCGCCTATGTCTTGAGGACCCGCACGGAGG
TGACAGCTCCAAGCTTTTGACAAAACTTTCGCATAGCGTATCCCTTCTCC
GGCTTGTACGACCAGAAATTACTGATTGGGTTTCTGCGTTTGACTTTGAA
GTTCAGAGTACGTCACCAGTAACGGAGAAGATTGGAGGGAGCTTGAAAGT
GAAAGATGACTCTGACCAAATTCGGAGGTCCCTTGACATGCTAATATCCA
GCGTGGGACTGGAAGATGTTGTAGTTCTGGTGGCGACAGCCTCTGCCTTT
TCAATAGAGAGCACGCGGTCGCTTCGAAGAGAATGCGAGGAGTACCTCAC
TGATCTTGAGAAAAACCCTGGAATTGTTCGAACAGGCGTATTGGTTGACA
AGAACGATCCGTATAGAATTATAATGATGACTGTTCATGACAGCTCAGAT
ATTGCAGGGGCATGTTTTGACATGGAACTTGCTTCAGACTACGTCACGGA
TGACGGGTGGACAGTTCAGCGATGCCATGCAGTGTTTCCCGATAAAGTTG
GATGGGAAAGAAAGCTAACAGAGGAGGACCAAAGGAGGTTCCTGGGTGAC
GTGATCGAAGAACGTTTTGAGCAACTCATAGACGGTCCAGGAGCTCTAAT
GAAATATGATCGCGGTGAAGCCGAAGATTCAAAAATGAGACTCTTACAAG
GCGCGGGATCATTCGAGATGCTGAAGGAGTGTATCGGATCTATGACTCAG
ATATCTGTTGGTGTTGCAAAGGCATTGCTAATCGGCGGATGGAATCAATC
ACGATTACATGCTCTTCTCATACAAATTGAGTACGATAGATACAAAGATC
CGTTTGAGATACAGTGGCGTTTTGGACCATCAGTCAGCAGCACAGAAATC
ATGACTGACCACTTGAGAAGAACTTTGTTGGAGGTAGCGGAGTTTTGTCC
TGATGTAATTATAGGGTATGGGGGTGGAACTGTGATGGACATGACAAAGC
TCTTAGGGAGGTTGGGAAATGCATCGAAGAGTGACCTCGAAACTTTTTTG
AACACCATCGACGGTGCGGCTGAGGCCGATGCCGCGGCTATTGGATTACC
AATAACTTCCAGACCTCTTCCAGTTGTGCTTATACCAACTACTGTCGGAA
GCGGCGCCGAAATGACTGAATGGTGCATCGTCGCAGCTCAAAAAGAGAAT
GGCTCTATTCGTCGCTTGCCTTTGTATTTCTACGACAGACCCGGAACAAT
GCGGCTGGTAACAGAGAAGACTGCCATACAAGAGTCGAGATTAATCAGTC
CAAGAAGACTCCAGGGAATTCACGCTTCTCAAGGTGCTCTAGAACTTGTC
TGTTTGGCAATCGATGATCTCATAGCGTTGGAGGAACACCTTGATGATCA
GGCATCGAAATTTGCAATCCGAGGACTGAGACAGGCTTATAGAGTGGTGA
TGGATGCCCGAAGAGAGCCTGAGAACGCCTCAGGGCATTCTAGAGACCCA
CTAGTTGAAGCGAAGACCCTTATTGGGTTGGCTACAGATGGAATTGGTCG
CCCTGGGGTCTGCGTTCGGCTCTGTCTCGCCATTCTAGACTCACTCGTGG
ACGGAAGATTACCCACGGCATTTCGACAAGTTCTGACGCGCATAACAATC
GCTATGGTGGAAGAATGCATGGACAATAGGCCGGAAGCAGGAAGAAGAGT
GTTTCGAGAAATCTTAAAGGCCACGAGGCACAATTACAGAAGAGAGCTTG
TGACGGACATGTTGAGAAAAGCTGAGGACTGCGATGTCCCCTTGTTGCCA
ATGGTAGGTATGGTGCAGCGAAAAACAGGAGACGTGGCGAGGCGGGTGTC
AAGGTATCTCGAGAGTGATACGCTGAGTCCCTTAGAAACCTTTCTGAGAC
AAGAACACGTACTGGAACGCATTCTACGAAGGGCAATTGAGCAAGAATAT
GAACTTTGA

protein sequence of Gcaud3285.t1

>Gcaud3285.t1 ID=Gcaud3285.t1|Name=Gcaud3285.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=753bp
MSSGEKAIVNKAQYNDQQNFSGILPQGAYTVLMRVKMKEKLNATEQKIIL
AEYARNSCAEQGVIRCDVLFRVNKLGIAKDDFYEIWISFADSRAYMEHER
TSHAAKLRLCLEDPHGGDSSKLLTKLSHSVSLLRLVRPEITDWVSAFDFE
VQSTSPVTEKIGGSLKVKDDSDQIRRSLDMLISSVGLEDVVVLVATASAF
SIESTRSLRRECEEYLTDLEKNPGIVRTGVLVDKNDPYRIIMMTVHDSSD
IAGACFDMELASDYVTDDGWTVQRCHAVFPDKVGWERKLTEEDQRRFLGD
VIEERFEQLIDGPGALMKYDRGEAEDSKMRLLQGAGSFEMLKECIGSMTQ
ISVGVAKALLIGGWNQSRLHALLIQIEYDRYKDPFEIQWRFGPSVSSTEI
MTDHLRRTLLEVAEFCPDVIIGYGGGTVMDMTKLLGRLGNASKSDLETFL
NTIDGAAEADAAAIGLPITSRPLPVVLIPTTVGSGAEMTEWCIVAAQKEN
GSIRRLPLYFYDRPGTMRLVTEKTAIQESRLISPRRLQGIHASQGALELV
CLAIDDLIALEEHLDDQASKFAIRGLRQAYRVVMDARREPENASGHSRDP
LVEAKTLIGLATDGIGRPGVCVRLCLAILDSLVDGRLPTAFRQVLTRITI
AMVEECMDNRPEAGRRVFREILKATRHNYRRELVTDMLRKAEDCDVPLLP
MVGMVQRKTGDVARRVSRYLESDTLSPLETFLRQEHVLERILRRAIEQEY
EL*

mRNA from alignment at NODE_84_length_54915_cov_4.457829:21491..23749-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3285.t1 ID=Gcaud3285.t1|Name=Gcaud3285.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:21491..23749- (Gracilaria caudata M_176_S67 male)
ATGTCATCCGGAGAGAAGGCCATCGTCAACAAAGCTCAATACAATGACCA
ACAAAACTTCAGTGGTATATTGCCGCAGGGGGCATACACTGTGCTCATGC
GAGTGAAGATGAAAGAGAAATTGAATGCCACGGAGCAGAAAATCATTTTG
GCAGAGTATGCGCGGAATAGTTGTGCTGAGCAAGGAGTGATCCGCTGCGA
CGTTTTATTCCGAGTAAACAAGCTGGGGATCGCAAAGGATGACTTTTACG
AGATATGGATTTCATTTGCGGATTCTCGGGCGTACATGGAACACGAACGA
ACATCCCATGCAGCCAAACTGCGCCTATGTCTTGAGGACCCGCACGGAGG
TGACAGCTCCAAGCTTTTGACAAAACTTTCGCATAGCGTATCCCTTCTCC
GGCTTGTACGACCAGAAATTACTGATTGGGTTTCTGCGTTTGACTTTGAA
GTTCAGAGTACGTCACCAGTAACGGAGAAGATTGGAGGGAGCTTGAAAGT
GAAAGATGACTCTGACCAAATTCGGAGGTCCCTTGACATGCTAATATCCA
GCGTGGGACTGGAAGATGTTGTAGTTCTGGTGGCGACAGCCTCTGCCTTT
TCAATAGAGAGCACGCGGTCGCTTCGAAGAGAATGCGAGGAGTACCTCAC
TGATCTTGAGAAAAACCCTGGAATTGTTCGAACAGGCGTATTGGTTGACA
AGAACGATCCGTATAGAATTATAATGATGACTGTTCATGACAGCTCAGAT
ATTGCAGGGGCATGTTTTGACATGGAACTTGCTTCAGACTACGTCACGGA
TGACGGGTGGACAGTTCAGCGATGCCATGCAGTGTTTCCCGATAAAGTTG
GATGGGAAAGAAAGCTAACAGAGGAGGACCAAAGGAGGTTCCTGGGTGAC
GTGATCGAAGAACGTTTTGAGCAACTCATAGACGGTCCAGGAGCTCTAAT
GAAATATGATCGCGGTGAAGCCGAAGATTCAAAAATGAGACTCTTACAAG
GCGCGGGATCATTCGAGATGCTGAAGGAGTGTATCGGATCTATGACTCAG
ATATCTGTTGGTGTTGCAAAGGCATTGCTAATCGGCGGATGGAATCAATC
ACGATTACATGCTCTTCTCATACAAATTGAGTACGATAGATACAAAGATC
CGTTTGAGATACAGTGGCGTTTTGGACCATCAGTCAGCAGCACAGAAATC
ATGACTGACCACTTGAGAAGAACTTTGTTGGAGGTAGCGGAGTTTTGTCC
TGATGTAATTATAGGGTATGGGGGTGGAACTGTGATGGACATGACAAAGC
TCTTAGGGAGGTTGGGAAATGCATCGAAGAGTGACCTCGAAACTTTTTTG
AACACCATCGACGGTGCGGCTGAGGCCGATGCCGCGGCTATTGGATTACC
AATAACTTCCAGACCTCTTCCAGTTGTGCTTATACCAACTACTGTCGGAA
GCGGCGCCGAAATGACTGAATGGTGCATCGTCGCAGCTCAAAAAGAGAAT
GGCTCTATTCGTCGCTTGCCTTTGTATTTCTACGACAGACCCGGAACAAT
GCGGCTGGTAACAGAGAAGACTGCCATACAAGAGTCGAGATTAATCAGTC
CAAGAAGACTCCAGGGAATTCACGCTTCTCAAGGTGCTCTAGAACTTGTC
TGTTTGGCAATCGATGATCTCATAGCGTTGGAGGAACACCTTGATGATCA
GGCATCGAAATTTGCAATCCGAGGACTGAGACAGGCTTATAGAGTGGTGA
TGGATGCCCGAAGAGAGCCTGAGAACGCCTCAGGGCATTCTAGAGACCCA
CTAGTTGAAGCGAAGACCCTTATTGGGTTGGCTACAGATGGAATTGGTCG
CCCTGGGGTCTGCGTTCGGCTCTGTCTCGCCATTCTAGACTCACTCGTGG
ACGGAAGATTACCCACGGCATTTCGACAAGTTCTGACGCGCATAACAATC
GCTATGGTGGAAGAATGCATGGACAATAGGCCGGAAGCAGGAAGAAGAGT
GTTTCGAGAAATCTTAAAGGCCACGAGGCACAATTACAGAAGAGAGCTTG
TGACGGACATGTTGAGAAAAGCTGAGGACTGCGATGTCCCCTTGTTGCCA
ATGGTAGGTATGGTGCAGCGAAAAACAGGAGACGTGGCGAGGCGGGTGTC
AAGGTATCTCGAGAGTGATACGCTGAGTCCCTTAGAAACCTTTCTGAGAC
AAGAACACGTACTGGAACGCATTCTACGAAGGGCAATTGAGCAAGAATAT
GAACTTTGA

Coding sequence (CDS) from alignment at NODE_84_length_54915_cov_4.457829:21491..23749-

>Gcaud3285.t1 ID=Gcaud3285.t1|Name=Gcaud3285.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2259bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:21491..23749- (Gracilaria caudata M_176_S67 male)
ATGTCATCCGGAGAGAAGGCCATCGTCAACAAAGCTCAATACAATGACCA
ACAAAACTTCAGTGGTATATTGCCGCAGGGGGCATACACTGTGCTCATGC
GAGTGAAGATGAAAGAGAAATTGAATGCCACGGAGCAGAAAATCATTTTG
GCAGAGTATGCGCGGAATAGTTGTGCTGAGCAAGGAGTGATCCGCTGCGA
CGTTTTATTCCGAGTAAACAAGCTGGGGATCGCAAAGGATGACTTTTACG
AGATATGGATTTCATTTGCGGATTCTCGGGCGTACATGGAACACGAACGA
ACATCCCATGCAGCCAAACTGCGCCTATGTCTTGAGGACCCGCACGGAGG
TGACAGCTCCAAGCTTTTGACAAAACTTTCGCATAGCGTATCCCTTCTCC
GGCTTGTACGACCAGAAATTACTGATTGGGTTTCTGCGTTTGACTTTGAA
GTTCAGAGTACGTCACCAGTAACGGAGAAGATTGGAGGGAGCTTGAAAGT
GAAAGATGACTCTGACCAAATTCGGAGGTCCCTTGACATGCTAATATCCA
GCGTGGGACTGGAAGATGTTGTAGTTCTGGTGGCGACAGCCTCTGCCTTT
TCAATAGAGAGCACGCGGTCGCTTCGAAGAGAATGCGAGGAGTACCTCAC
TGATCTTGAGAAAAACCCTGGAATTGTTCGAACAGGCGTATTGGTTGACA
AGAACGATCCGTATAGAATTATAATGATGACTGTTCATGACAGCTCAGAT
ATTGCAGGGGCATGTTTTGACATGGAACTTGCTTCAGACTACGTCACGGA
TGACGGGTGGACAGTTCAGCGATGCCATGCAGTGTTTCCCGATAAAGTTG
GATGGGAAAGAAAGCTAACAGAGGAGGACCAAAGGAGGTTCCTGGGTGAC
GTGATCGAAGAACGTTTTGAGCAACTCATAGACGGTCCAGGAGCTCTAAT
GAAATATGATCGCGGTGAAGCCGAAGATTCAAAAATGAGACTCTTACAAG
GCGCGGGATCATTCGAGATGCTGAAGGAGTGTATCGGATCTATGACTCAG
ATATCTGTTGGTGTTGCAAAGGCATTGCTAATCGGCGGATGGAATCAATC
ACGATTACATGCTCTTCTCATACAAATTGAGTACGATAGATACAAAGATC
CGTTTGAGATACAGTGGCGTTTTGGACCATCAGTCAGCAGCACAGAAATC
ATGACTGACCACTTGAGAAGAACTTTGTTGGAGGTAGCGGAGTTTTGTCC
TGATGTAATTATAGGGTATGGGGGTGGAACTGTGATGGACATGACAAAGC
TCTTAGGGAGGTTGGGAAATGCATCGAAGAGTGACCTCGAAACTTTTTTG
AACACCATCGACGGTGCGGCTGAGGCCGATGCCGCGGCTATTGGATTACC
AATAACTTCCAGACCTCTTCCAGTTGTGCTTATACCAACTACTGTCGGAA
GCGGCGCCGAAATGACTGAATGGTGCATCGTCGCAGCTCAAAAAGAGAAT
GGCTCTATTCGTCGCTTGCCTTTGTATTTCTACGACAGACCCGGAACAAT
GCGGCTGGTAACAGAGAAGACTGCCATACAAGAGTCGAGATTAATCAGTC
CAAGAAGACTCCAGGGAATTCACGCTTCTCAAGGTGCTCTAGAACTTGTC
TGTTTGGCAATCGATGATCTCATAGCGTTGGAGGAACACCTTGATGATCA
GGCATCGAAATTTGCAATCCGAGGACTGAGACAGGCTTATAGAGTGGTGA
TGGATGCCCGAAGAGAGCCTGAGAACGCCTCAGGGCATTCTAGAGACCCA
CTAGTTGAAGCGAAGACCCTTATTGGGTTGGCTACAGATGGAATTGGTCG
CCCTGGGGTCTGCGTTCGGCTCTGTCTCGCCATTCTAGACTCACTCGTGG
ACGGAAGATTACCCACGGCATTTCGACAAGTTCTGACGCGCATAACAATC
GCTATGGTGGAAGAATGCATGGACAATAGGCCGGAAGCAGGAAGAAGAGT
GTTTCGAGAAATCTTAAAGGCCACGAGGCACAATTACAGAAGAGAGCTTG
TGACGGACATGTTGAGAAAAGCTGAGGACTGCGATGTCCCCTTGTTGCCA
ATGGTAGGTATGGTGCAGCGAAAAACAGGAGACGTGGCGAGGCGGGTGTC
AAGGTATCTCGAGAGTGATACGCTGAGTCCCTTAGAAACCTTTCTGAGAC
AAGAACACGTACTGGAACGCATTCTACGAAGGGCAATTGAGCAAGAATAT
GAACTTTGA