Gcaud3270.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3270.t1
Unique Name	Gcaud3270.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	542

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_327_length_29891_cov_4.655638	contig	NODE_327_length_29891_cov_4.655638:1696..4116 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3075.A0A087SG77
PFAMs	MOZ_SAS,Tudor-knot
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K11308
Evalue	5.29e-46
EggNOG OGs	COG5027@1\|root,KOG2747@2759\|Eukaryota,37SWR@33090\|Viridiplantae,34HHP@3041\|Chlorophyta
EC	2.3.1.48
Description	Belongs to the MYST (SAS MOZ) family
COG category	B
BRITE	ko00000,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3270	Gcaud3270	Gracilaria caudata M_176_S67 male	gene	NODE_327_length_29891_cov_4.655638 1696..4116 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3270.t1	Gcaud3270.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_327_length_29891_cov_4.655638 1696..4116 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3270.t1.start1	Gcaud3270.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_327_length_29891_cov_4.655638 1696..1698 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3270.t1.CDS1	Gcaud3270.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_327_length_29891_cov_4.655638 1696..2181 +
Gcaud3270.t1.CDS2	Gcaud3270.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_327_length_29891_cov_4.655638 2234..2255 +
Gcaud3270.t1.CDS3	Gcaud3270.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_327_length_29891_cov_4.655638 2405..3366 +
Gcaud3270.t1.CDS4	Gcaud3270.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_327_length_29891_cov_4.655638 3760..3833 +
Gcaud3270.t1.CDS5	Gcaud3270.t1.CDS5	Gracilaria caudata M_176_S67 male	CDS	NODE_327_length_29891_cov_4.655638 4035..4116 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3270.t1.exon1	Gcaud3270.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_327_length_29891_cov_4.655638 1696..2181 +
Gcaud3270.t1.exon2	Gcaud3270.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_327_length_29891_cov_4.655638 2234..2255 +
Gcaud3270.t1.exon3	Gcaud3270.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_327_length_29891_cov_4.655638 2405..3366 +
Gcaud3270.t1.exon4	Gcaud3270.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_327_length_29891_cov_4.655638 3760..3833 +
Gcaud3270.t1.exon5	Gcaud3270.t1.exon5	Gracilaria caudata M_176_S67 male	exon	NODE_327_length_29891_cov_4.655638 4035..4116 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3270.t1.intron1	Gcaud3270.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_327_length_29891_cov_4.655638 2182..2233 +
Gcaud3270.t1.intron2	Gcaud3270.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_327_length_29891_cov_4.655638 2256..2404 +
Gcaud3270.t1.intron3	Gcaud3270.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_327_length_29891_cov_4.655638 3367..3759 +
Gcaud3270.t1.intron4	Gcaud3270.t1.intron4	Gracilaria caudata M_176_S67 male	intron	NODE_327_length_29891_cov_4.655638 3834..4034 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3270.t1.stop1	Gcaud3270.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_327_length_29891_cov_4.655638 4114..4116 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_327_length_29891_cov_4.655638:1696..4116+
coding sequence from alignment at NODE_327_length_29891_cov_4.655638:1696..4116+

mRNA sequence

>Gcaud3270.t1 ID=Gcaud3270.t1|Name=Gcaud3270.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=542bp
MAPLLPSPRASPNPVVLARVVQLSREYISDAADFALAPPKPSFLPIDLNA
PPPLWLPREPVSPVPPQPVSHALVYISFVGRDNRLDRWAHAHELVSATPA
QLDAVKRGSSSNSTAEPEVKLTRARRRAKAASNPVSEDHYVHDLSQMELA
QLKNVKVKNISNFLTAPTSFSLRYCQALCLLAKLFLDHKTLFCDVTPFLF
YVVTHNGQLAAFFSKEHPTIQSEFNVACILTFPPHQKKGIGRFLIALSYE
LTRREGKTAGPEHPLSDLGQLSYRSYWKQAIVRYLRNRDKRTSLCAKVSV
TEISQATGIRFDDVVLTLKDTNLYSLWKGEHFADAARISDEFVEKTIKPG
RLPFFSDKLRHTVFVSNVPLSPLRTPTSRHPSSTRPKRPKTPKYKKDELA
KLVTHSPSAEKEPLSVQRSSSFNSSGAYATHPEFNETLTKRLSRFIQNHT
PDKVFAASRMRMCGEPEVKKYIHALAKELQLDYDFLCGRLVYSFIPSGDC
SAQSMFFDGIVLLIVRYPRSCDECPCSAKGTTRLTLFVEFG*

spliced messenger RNA

>Gcaud3270.t1 ID=Gcaud3270.t1|Name=Gcaud3270.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at NODE_327_length_29891_cov_4.655638:1696..4116+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGTTGCTACCATCGCCGCGCGCCTCGCCCAACCCCGTCGTGCT
GGCGCGCGTGGTGCAGCTCAGCCGAGAGTATATCTCCGACGCTGCCGATT
TCGCGCTTGCACCGCCTAAGCCCTCTTTTCTTCCCATCGATCTTAACGCC
CCACCTCCGCTGTGGCTTCCTCGTGAGCCAGTTTCGCCCGTGCCCCCGCA
ACCCGTTTCTCATGCCCTCGTATATATTTCCTTTGTCGGCCGTGATAACC
GCCTGGATAGATGGGCCCACGCTCACGAGCTCGTTTCCGCCACCCCGGCA
CAGCTCGATGCCGTCAAGCGCGGATCTTCGTCTAATTCCACTGCCGAGCC
TGAGGTCAAGCTCACCAGGGCCCGCAGACGTGCCAAGGCCGCGTCCAATC
CCGTCTCCGAGGACCATTACGTGCACGACCTCTCCCAGATGGAGCTCGCG
CAGCTCAAGAACGTCAAGGTCAAGAACATTTCAAATTTCCTAACGGCGCC
CACAAGCTTCAGCCTTCGCTACTGCCAAGCACTTTGCTTACTCGCCAAGC
TTTTCCTCGATCACAAGACTCTCTTCTGTGATGTTACACCTTTCTTGTTC
TATGTCGTCACTCATAATGGCCAGTTAGCTGCGTTTTTCTCTAAGGAACA
CCCAACAATACAGTCTGAGTTCAATGTGGCTTGCATTCTCACCTTTCCGC
CCCATCAAAAAAAAGGCATTGGAAGGTTTCTCATAGCGCTCAGTTACGAG
CTCACCAGGAGGGAGGGAAAAACAGCTGGCCCAGAACATCCACTGTCCGA
TCTTGGTCAGCTGAGCTATCGCAGTTACTGGAAGCAAGCCATTGTACGCT
ACTTAAGGAATCGTGATAAAAGAACCTCTCTATGTGCCAAGGTTAGCGTC
ACCGAAATATCGCAGGCGACCGGAATCCGGTTTGACGATGTTGTCCTCAC
CCTCAAGGATACCAATCTGTACTCATTGTGGAAAGGGGAACATTTCGCGG
ACGCCGCTCGCATTTCCGACGAGTTTGTCGAGAAAACTATCAAACCAGGG
CGCTTGCCCTTTTTCTCGGACAAGTTGCGACACACCGTTTTTGTTTCAAA
CGTACCATTGTCTCCACTTCGTACACCAACATCGCGGCACCCCTCATCGA
CAAGACCCAAGCGGCCGAAAACCCCAAAGTATAAGAAGGATGAGTTGGCC
AAGTTGGTGACCCACTCTCCGAGTGCCGAGAAAGAACCGCTTTCTGTTCA
ACGTTCTTCTAGTTTCAATTCTTCTGGTGCTTACGCTACTCATCCAGAAT
TCAATGAGACACTAACGAAACGTTTGAGCAGGTTTATACAAAACCACACG
CCAGACAAGGTGTTCGCCGCATCTCGCATGCGAATGTGCGGCGAACCCGA
AGTTAAGAAGTATATTCATGCGCTTGCCAAAGAACTTCAGTTGGACTACG
ACTTCCTTTGTGGCCGATTGGTATATTCTTTCATTCCGTCTGGAGACTGC
TCTGCTCAAAGCATGTTTTTTGATGGAATAGTACTGTTGATTGTACGTTA
TCCACGGAGCTGTGATGAATGCCCGTGTTCTGCTAAGGGAACTACACGGT
TAACACTCTTCGTGGAATTTGGCTAA

protein sequence of Gcaud3270.t1

>Gcaud3270.t1 ID=Gcaud3270.t1|Name=Gcaud3270.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=542bp
MAPLLPSPRASPNPVVLARVVQLSREYISDAADFALAPPKPSFLPIDLNA
PPPLWLPREPVSPVPPQPVSHALVYISFVGRDNRLDRWAHAHELVSATPA
QLDAVKRGSSSNSTAEPEVKLTRARRRAKAASNPVSEDHYVHDLSQMELA
QLKNVKVKNISNFLTAPTSFSLRYCQALCLLAKLFLDHKTLFCDVTPFLF
YVVTHNGQLAAFFSKEHPTIQSEFNVACILTFPPHQKKGIGRFLIALSYE
LTRREGKTAGPEHPLSDLGQLSYRSYWKQAIVRYLRNRDKRTSLCAKVSV
TEISQATGIRFDDVVLTLKDTNLYSLWKGEHFADAARISDEFVEKTIKPG
RLPFFSDKLRHTVFVSNVPLSPLRTPTSRHPSSTRPKRPKTPKYKKDELA
KLVTHSPSAEKEPLSVQRSSSFNSSGAYATHPEFNETLTKRLSRFIQNHT
PDKVFAASRMRMCGEPEVKKYIHALAKELQLDYDFLCGRLVYSFIPSGDC
SAQSMFFDGIVLLIVRYPRSCDECPCSAKGTTRLTLFVEFG*

mRNA from alignment at NODE_327_length_29891_cov_4.655638:1696..4116+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3270.t1 ID=Gcaud3270.t1|Name=Gcaud3270.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2421bp|location=Sequence derived from alignment at NODE_327_length_29891_cov_4.655638:1696..4116+ (Gracilaria caudata M_176_S67 male)
ATGGCGCCGTTGCTACCATCGCCGCGCGCCTCGCCCAACCCCGTCGTGCT
GGCGCGCGTGGTGCAGCTCAGCCGAGAGTATATCTCCGACGCTGCCGATT
TCGCGCTTGCACCGCCTAAGCCCTCTTTTCTTCCCATCGATCTTAACGCC
CCACCTCCGCTGTGGCTTCCTCGTGAGCCAGTTTCGCCCGTGCCCCCGCA
ACCCGTTTCTCATGCCCTCGTATATATTTCCTTTGTCGGCCGTGATAACC
GCCTGGATAGATGGGCCCACGCTCACGAGCTCGTTTCCGCCACCCCGGCA
CAGCTCGATGCCGTCAAGCGCGGATCTTCGTCTAATTCCACTGCCGAGCC
TGAGGTCAAGCTCACCAGGGCCCGCAGACGTGCCAAGGCCGCGTCCAATC
CCGTCTCCGAGGACCATTACGTGCACGACCTCTCCCAGATGGAGCTCGCG
CAGCTCAAGAACGTCAAGGTCAAGAACATTTCAAATGTCGTTCTCAAGCC
CTATACCTTCCATGCCTGGTACTATTCCCCGTTTCCAGTTCCTAACGGCG
CCCACAAGCTGTATGTCTGTGATAAGTGTTTGCATTATGTCTTCACAAAA
CCACATTTCTCTCAGCATCTCTCCGTTTGTGTGTGGAAAACTCCCCCAGG
ATCGCTGTTATACGAAGATACTGACAGACACATTTGCGTTTACGAGATTG
ACTCCATAGTCAGCCTTCGCTACTGCCAAGCACTTTGCTTACTCGCCAAG
CTTTTCCTCGATCACAAGACTCTCTTCTGTGATGTTACACCTTTCTTGTT
CTATGTCGTCACTCATAATGGCCAGTTAGCTGCGTTTTTCTCTAAGGAAC
ACCCAACAATACAGTCTGAGTTCAATGTGGCTTGCATTCTCACCTTTCCG
CCCCATCAAAAAAAAGGCATTGGAAGGTTTCTCATAGCGCTCAGTTACGA
GCTCACCAGGAGGGAGGGAAAAACAGCTGGCCCAGAACATCCACTGTCCG
ATCTTGGTCAGCTGAGCTATCGCAGTTACTGGAAGCAAGCCATTGTACGC
TACTTAAGGAATCGTGATAAAAGAACCTCTCTATGTGCCAAGGTTAGCGT
CACCGAAATATCGCAGGCGACCGGAATCCGGTTTGACGATGTTGTCCTCA
CCCTCAAGGATACCAATCTGTACTCATTGTGGAAAGGGGAACATTTCGCG
GACGCCGCTCGCATTTCCGACGAGTTTGTCGAGAAAACTATCAAACCAGG
GCGCTTGCCCTTTTTCTCGGACAAGTTGCGACACACCGTTTTTGTTTCAA
ACGTACCATTGTCTCCACTTCGTACACCAACATCGCGGCACCCCTCATCG
ACAAGACCCAAGCGGCCGAAAACCCCAAAGTATAAGAAGGATGAGTTGGC
CAAGTTGGTGACCCACTCTCCGAGTGCCGAGAAAGAACCGCTTTCTGTTC
AACGTTCTTCTAGTTTCAATTCTTCTGGTGCTTACGCTACTCATCCAGAA
TTCAATGAGACACTAACGAAACGTTTGAGCAGGTTTATACAAAACCACAC
GCCAGACAAGGTGTTCGCCGCATCTCGCATGCGAATGTGCGGCGAACCCG
AAGTTAAGAAGTATATTCATGCGCTTGCCAAAGAACTTCAGTTGGACTAC
GACTTCCTTTGTGGCCGATTGGTAAAGATGACCGCCGCAATACTAAACAA
TAGGACATGCTCCTATTCGAATTCGCGTAGGCTTGGGAACGGCATTTCAA
AAACTCGTAACCCCCAGAACGGTGAGCTTAAAGTACAGAATGGTATCTCA
AGGAATGGTAAGCTGAGTCACATGGGACGTCACGACATGCAAACTTTACG
GAAAGATTTCATGCTTGTTGGTGGCCGGCGTAAAGGCTCACACTCGGGAT
ACACCATGCCAGAAAAGGAGTCAGATATAGTTTACATTGCATCGCAATCG
TCGGACGACTGATACTACAATCTCATTACGATTCAGCTGCGATGTGGGGA
GTTAATGACCAAATTGGGGGAGCACTGGACTACTTAGGCTCGGCAATATT
TTTTGTTCGCCTAGGTATATTCTTTCATTCCGTCTGGAGACTGCTCTGCT
CAAAGCATGTTTTTTGATGGAATAGTACTGTTGATTGTGTACGTTGACCA
CCCACGTGCACATATCATACTTGATGGCGAGGTTTAAAGGTGGGGAGCGG
AACCAAGCACCAGCTCGTTCGAAAGTTGTTGGCTGCACAGACTCCCCCCC
TCCTGACACCCGGGGTCGGCTTGAACTACTTCTGCTTTATGTTATTTGAA
AGCTAACTAGATCCCTAACTTGTTCTAACCCGCCACAAGACGTTATCCAC
GGAGCTGTGATGAATGCCCGTGTTCTGCTAAGGGAACTACACGGTTAACA
CTCTTCGTGGAATTTGGCTAA

Coding sequence (CDS) from alignment at NODE_327_length_29891_cov_4.655638:1696..4116+

>Gcaud3270.t1 ID=Gcaud3270.t1|Name=Gcaud3270.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1626bp|location=Sequence derived from alignment at NODE_327_length_29891_cov_4.655638:1696..4116+ (Gracilaria caudata M_176_S67 male)
ATGGCGCCGTTGCTACCATCGCCGCGCGCCTCGCCCAACCCCGTCGTGCT
GGCGCGCGTGGTGCAGCTCAGCCGAGAGTATATCTCCGACGCTGCCGATT
TCGCGCTTGCACCGCCTAAGCCCTCTTTTCTTCCCATCGATCTTAACGCC
CCACCTCCGCTGTGGCTTCCTCGTGAGCCAGTTTCGCCCGTGCCCCCGCA
ACCCGTTTCTCATGCCCTCGTATATATTTCCTTTGTCGGCCGTGATAACC
GCCTGGATAGATGGGCCCACGCTCACGAGCTCGTTTCCGCCACCCCGGCA
CAGCTCGATGCCGTCAAGCGCGGATCTTCGTCTAATTCCACTGCCGAGCC
TGAGGTCAAGCTCACCAGGGCCCGCAGACGTGCCAAGGCCGCGTCCAATC
CCGTCTCCGAGGACCATTACGTGCACGACCTCTCCCAGATGGAGCTCGCG
CAGCTCAAGAACGTCAAGGTCAAGAACATTTCAAATTTCCTAACGGCGCC
CACAAGCTTCAGCCTTCGCTACTGCCAAGCACTTTGCTTACTCGCCAAGC
TTTTCCTCGATCACAAGACTCTCTTCTGTGATGTTACACCTTTCTTGTTC
TATGTCGTCACTCATAATGGCCAGTTAGCTGCGTTTTTCTCTAAGGAACA
CCCAACAATACAGTCTGAGTTCAATGTGGCTTGCATTCTCACCTTTCCGC
CCCATCAAAAAAAAGGCATTGGAAGGTTTCTCATAGCGCTCAGTTACGAG
CTCACCAGGAGGGAGGGAAAAACAGCTGGCCCAGAACATCCACTGTCCGA
TCTTGGTCAGCTGAGCTATCGCAGTTACTGGAAGCAAGCCATTGTACGCT
ACTTAAGGAATCGTGATAAAAGAACCTCTCTATGTGCCAAGGTTAGCGTC
ACCGAAATATCGCAGGCGACCGGAATCCGGTTTGACGATGTTGTCCTCAC
CCTCAAGGATACCAATCTGTACTCATTGTGGAAAGGGGAACATTTCGCGG
ACGCCGCTCGCATTTCCGACGAGTTTGTCGAGAAAACTATCAAACCAGGG
CGCTTGCCCTTTTTCTCGGACAAGTTGCGACACACCGTTTTTGTTTCAAA
CGTACCATTGTCTCCACTTCGTACACCAACATCGCGGCACCCCTCATCGA
CAAGACCCAAGCGGCCGAAAACCCCAAAGTATAAGAAGGATGAGTTGGCC
AAGTTGGTGACCCACTCTCCGAGTGCCGAGAAAGAACCGCTTTCTGTTCA
ACGTTCTTCTAGTTTCAATTCTTCTGGTGCTTACGCTACTCATCCAGAAT
TCAATGAGACACTAACGAAACGTTTGAGCAGGTTTATACAAAACCACACG
CCAGACAAGGTGTTCGCCGCATCTCGCATGCGAATGTGCGGCGAACCCGA
AGTTAAGAAGTATATTCATGCGCTTGCCAAAGAACTTCAGTTGGACTACG
ACTTCCTTTGTGGCCGATTGGTATATTCTTTCATTCCGTCTGGAGACTGC
TCTGCTCAAAGCATGTTTTTTGATGGAATAGTACTGTTGATTGTACGTTA
TCCACGGAGCTGTGATGAATGCCCGTGTTCTGCTAAGGGAACTACACGGT
TAACACTCTTCGTGGAATTTGGCTAA