Gcaud3267.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3267.t1
Unique Name	Gcaud3267.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	719

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_531_length_22802_cov_4.496588	contig	NODE_531_length_22802_cov_4.496588:13728..15884 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708507.1
PFAMs	Nucleotid_trans
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20892
Evalue	4.16e-268
EggNOG OGs	2CMQE@1\|root,2QRDX@2759\|Eukaryota
Description	transferase activity, transferring glycosyl groups
COG category	S
CAZy	GT77
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3267	Gcaud3267	Gracilaria caudata M_176_S67 male	gene	NODE_531_length_22802_cov_4.496588 13728..15884 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3267.t1.stop1	Gcaud3267.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_531_length_22802_cov_4.496588 13728..13730 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3267.t1.CDS1	Gcaud3267.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_531_length_22802_cov_4.496588 13728..15884 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3267.t1.exon1	Gcaud3267.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_531_length_22802_cov_4.496588 13728..15884 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3267.t1.start1	Gcaud3267.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_531_length_22802_cov_4.496588 15882..15884 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3267.t1	Gcaud3267.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_531_length_22802_cov_4.496588 13728..15884 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_531_length_22802_cov_4.496588:13728..15884-
coding sequence from alignment at NODE_531_length_22802_cov_4.496588:13728..15884-

mRNA sequence

>Gcaud3267.t1 ID=Gcaud3267.t1|Name=Gcaud3267.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=719bp
MHAPKVRSQRMEVRPDKRGMRKMKLNKIYRTPQFYLFIWALLLLLLYVDT
SLLPFRHKSSIIFIGSRSNLRSTGMGAQSVLESESLEVEIFSAPKPFLDE
DREVNLRAIRSWQRLVPRPKITLLGLETGYEEVAVEYGLNLRCDVDKNFL
GVPLFNSMFYIANSSKADVAVIINGDIILLNDFISTLRKVRSRFKDYLMI
SARYDLEKLPGDISEEKEDYDDKLRQYVLSHGKLHTYGGMDLWAWNPDGP
PLFDQHMPPFIFGRGKYDNWLTHETISAGRRQVIDASEAVMSVHIRHNHI
RVSQSGISKSEDIFWSEGKRSKFELFINIYLSSRFGSYKNQMGNILYAPW
RIARCLEASGSCLVRRMRPGICNCEYSPSSGETQTDPTLKLGSRVIKCGS
ISHETKSDFEIPVVPNSDGKPEFFGFPLTLGTVVERIVEDNTVILSAMNY
GYREMMMNWVCNMRQLNITNFIVAAFDEQLYRYAFLQGLPVYFENTVISN
ASVLDAAYGTDAFKQLTKLKSRIVLRVLKLGYDVVWTDTDIVWFRNPLND
LKGYDADLVIQSNAPDGEATNGYRRINSGFYLAHSNKRTMEAFEDVIAYA
KRSRMSEQPCFYDVICGKKGERTVGNDRCNYKGMALQLLDRGIYPNGNTF
GMWALPSGTILLQFPNIFILHNNWIKGSVEKRKRFEKHGFVMYNKDVGIC
KYSPLFLPSLPLSFSELR*

spliced messenger RNA

>Gcaud3267.t1 ID=Gcaud3267.t1|Name=Gcaud3267.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2157bp|location=Sequence derived from alignment at NODE_531_length_22802_cov_4.496588:13728..15884- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCGCCCAAGGTGCGAAGCCAACGTATGGAGGTTAGGCCAGATAA
GAGAGGTATGAGAAAGATGAAGCTTAACAAGATTTACCGAACGCCGCAGT
TTTATCTCTTTATATGGGCCTTGCTGTTACTACTTCTTTATGTAGACACG
AGCTTACTTCCATTCAGGCACAAGTCTTCGATTATTTTCATTGGAAGCCG
TTCGAATCTACGGTCTACAGGAATGGGAGCCCAGTCTGTACTTGAATCTG
AATCGTTAGAGGTTGAAATATTTTCGGCTCCAAAGCCGTTTCTCGATGAA
GATCGTGAAGTAAACCTGCGAGCAATCAGATCATGGCAAAGGTTAGTACC
AAGGCCTAAAATTACCCTCCTCGGACTCGAAACAGGATATGAAGAGGTAG
CCGTTGAGTATGGCCTAAACTTAAGGTGTGATGTTGACAAGAACTTCCTT
GGGGTCCCTCTTTTCAATTCTATGTTCTATATTGCTAATTCTTCAAAGGC
TGACGTTGCTGTGATTATCAACGGAGATATCATCTTATTAAATGATTTTA
TTTCAACACTAAGGAAGGTGAGATCAAGGTTTAAGGATTATCTCATGATC
AGTGCCCGATACGACCTCGAGAAACTGCCCGGCGATATAAGCGAAGAAAA
GGAGGACTACGACGATAAGTTGCGACAATATGTTCTAAGTCATGGGAAAC
TCCACACATACGGTGGAATGGACTTATGGGCCTGGAATCCGGACGGCCCT
CCCTTGTTCGATCAACATATGCCACCCTTTATCTTTGGTCGTGGAAAGTA
CGATAATTGGTTAACCCACGAAACTATCTCAGCAGGTCGGCGACAAGTCA
TTGACGCCTCGGAGGCAGTGATGAGCGTCCATATTCGCCATAATCACATC
CGTGTATCTCAGTCGGGAATTTCCAAATCCGAAGACATCTTTTGGTCCGA
AGGGAAGAGGTCCAAGTTTGAGCTTTTCATCAACATATATCTGAGTTCTC
GGTTTGGGTCATATAAAAACCAAATGGGAAACATTCTGTACGCGCCTTGG
CGCATTGCAAGATGTCTCGAAGCAAGTGGGTCTTGTTTGGTTCGGAGAAT
GAGACCTGGTATTTGCAACTGTGAGTATTCTCCGTCATCTGGAGAGACGC
AAACTGACCCTACTCTCAAACTTGGTTCAAGGGTAATTAAGTGTGGAAGT
ATTTCGCACGAGACGAAATCGGACTTCGAGATACCAGTTGTGCCAAATTC
GGACGGTAAACCAGAGTTTTTCGGGTTTCCCCTAACGCTAGGAACAGTTG
TGGAACGAATAGTTGAGGACAACACAGTGATTCTTTCGGCGATGAATTAT
GGATATCGGGAAATGATGATGAACTGGGTTTGCAACATGAGGCAGCTCAA
CATAACGAATTTTATCGTTGCAGCCTTTGATGAGCAACTGTACAGATATG
CATTTTTGCAGGGACTCCCAGTGTACTTCGAGAACACAGTGATATCAAAC
GCAAGCGTTTTGGATGCCGCTTATGGCACTGATGCTTTCAAGCAATTGAC
AAAACTAAAGTCCAGGATTGTGCTTCGAGTTTTGAAACTGGGATATGATG
TTGTATGGACTGACACGGACATCGTCTGGTTTCGAAATCCTCTGAATGAC
CTGAAAGGCTACGATGCCGACCTCGTCATTCAATCGAACGCTCCTGATGG
GGAGGCCACCAATGGGTATAGAAGGATCAACTCGGGTTTCTATTTAGCCC
ATAGCAACAAAAGAACAATGGAAGCCTTTGAAGATGTCATTGCTTATGCT
AAACGATCAAGAATGTCAGAACAGCCTTGCTTTTACGACGTAATCTGTGG
CAAAAAAGGAGAGAGAACGGTTGGAAACGATCGCTGCAATTACAAGGGCA
TGGCTTTGCAGCTACTGGACCGTGGGATATATCCCAACGGAAACACCTTC
GGTATGTGGGCGCTGCCGTCAGGAACAATACTCTTGCAGTTCCCAAACAT
ATTCATCTTGCACAACAACTGGATAAAAGGGTCCGTGGAGAAACGAAAGA
GGTTTGAGAAACACGGGTTCGTAATGTACAACAAGGATGTTGGGATTTGC
AAATATAGCCCTCTGTTCCTACCTTCCTTGCCACTATCGTTCTCGGAGTT
ACGATAG

protein sequence of Gcaud3267.t1

>Gcaud3267.t1 ID=Gcaud3267.t1|Name=Gcaud3267.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=719bp
MHAPKVRSQRMEVRPDKRGMRKMKLNKIYRTPQFYLFIWALLLLLLYVDT
SLLPFRHKSSIIFIGSRSNLRSTGMGAQSVLESESLEVEIFSAPKPFLDE
DREVNLRAIRSWQRLVPRPKITLLGLETGYEEVAVEYGLNLRCDVDKNFL
GVPLFNSMFYIANSSKADVAVIINGDIILLNDFISTLRKVRSRFKDYLMI
SARYDLEKLPGDISEEKEDYDDKLRQYVLSHGKLHTYGGMDLWAWNPDGP
PLFDQHMPPFIFGRGKYDNWLTHETISAGRRQVIDASEAVMSVHIRHNHI
RVSQSGISKSEDIFWSEGKRSKFELFINIYLSSRFGSYKNQMGNILYAPW
RIARCLEASGSCLVRRMRPGICNCEYSPSSGETQTDPTLKLGSRVIKCGS
ISHETKSDFEIPVVPNSDGKPEFFGFPLTLGTVVERIVEDNTVILSAMNY
GYREMMMNWVCNMRQLNITNFIVAAFDEQLYRYAFLQGLPVYFENTVISN
ASVLDAAYGTDAFKQLTKLKSRIVLRVLKLGYDVVWTDTDIVWFRNPLND
LKGYDADLVIQSNAPDGEATNGYRRINSGFYLAHSNKRTMEAFEDVIAYA
KRSRMSEQPCFYDVICGKKGERTVGNDRCNYKGMALQLLDRGIYPNGNTF
GMWALPSGTILLQFPNIFILHNNWIKGSVEKRKRFEKHGFVMYNKDVGIC
KYSPLFLPSLPLSFSELR*

mRNA from alignment at NODE_531_length_22802_cov_4.496588:13728..15884-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3267.t1 ID=Gcaud3267.t1|Name=Gcaud3267.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2157bp|location=Sequence derived from alignment at NODE_531_length_22802_cov_4.496588:13728..15884- (Gracilaria caudata M_176_S67 male)
ATGCATGCGCCCAAGGTGCGAAGCCAACGTATGGAGGTTAGGCCAGATAA
GAGAGGTATGAGAAAGATGAAGCTTAACAAGATTTACCGAACGCCGCAGT
TTTATCTCTTTATATGGGCCTTGCTGTTACTACTTCTTTATGTAGACACG
AGCTTACTTCCATTCAGGCACAAGTCTTCGATTATTTTCATTGGAAGCCG
TTCGAATCTACGGTCTACAGGAATGGGAGCCCAGTCTGTACTTGAATCTG
AATCGTTAGAGGTTGAAATATTTTCGGCTCCAAAGCCGTTTCTCGATGAA
GATCGTGAAGTAAACCTGCGAGCAATCAGATCATGGCAAAGGTTAGTACC
AAGGCCTAAAATTACCCTCCTCGGACTCGAAACAGGATATGAAGAGGTAG
CCGTTGAGTATGGCCTAAACTTAAGGTGTGATGTTGACAAGAACTTCCTT
GGGGTCCCTCTTTTCAATTCTATGTTCTATATTGCTAATTCTTCAAAGGC
TGACGTTGCTGTGATTATCAACGGAGATATCATCTTATTAAATGATTTTA
TTTCAACACTAAGGAAGGTGAGATCAAGGTTTAAGGATTATCTCATGATC
AGTGCCCGATACGACCTCGAGAAACTGCCCGGCGATATAAGCGAAGAAAA
GGAGGACTACGACGATAAGTTGCGACAATATGTTCTAAGTCATGGGAAAC
TCCACACATACGGTGGAATGGACTTATGGGCCTGGAATCCGGACGGCCCT
CCCTTGTTCGATCAACATATGCCACCCTTTATCTTTGGTCGTGGAAAGTA
CGATAATTGGTTAACCCACGAAACTATCTCAGCAGGTCGGCGACAAGTCA
TTGACGCCTCGGAGGCAGTGATGAGCGTCCATATTCGCCATAATCACATC
CGTGTATCTCAGTCGGGAATTTCCAAATCCGAAGACATCTTTTGGTCCGA
AGGGAAGAGGTCCAAGTTTGAGCTTTTCATCAACATATATCTGAGTTCTC
GGTTTGGGTCATATAAAAACCAAATGGGAAACATTCTGTACGCGCCTTGG
CGCATTGCAAGATGTCTCGAAGCAAGTGGGTCTTGTTTGGTTCGGAGAAT
GAGACCTGGTATTTGCAACTGTGAGTATTCTCCGTCATCTGGAGAGACGC
AAACTGACCCTACTCTCAAACTTGGTTCAAGGGTAATTAAGTGTGGAAGT
ATTTCGCACGAGACGAAATCGGACTTCGAGATACCAGTTGTGCCAAATTC
GGACGGTAAACCAGAGTTTTTCGGGTTTCCCCTAACGCTAGGAACAGTTG
TGGAACGAATAGTTGAGGACAACACAGTGATTCTTTCGGCGATGAATTAT
GGATATCGGGAAATGATGATGAACTGGGTTTGCAACATGAGGCAGCTCAA
CATAACGAATTTTATCGTTGCAGCCTTTGATGAGCAACTGTACAGATATG
CATTTTTGCAGGGACTCCCAGTGTACTTCGAGAACACAGTGATATCAAAC
GCAAGCGTTTTGGATGCCGCTTATGGCACTGATGCTTTCAAGCAATTGAC
AAAACTAAAGTCCAGGATTGTGCTTCGAGTTTTGAAACTGGGATATGATG
TTGTATGGACTGACACGGACATCGTCTGGTTTCGAAATCCTCTGAATGAC
CTGAAAGGCTACGATGCCGACCTCGTCATTCAATCGAACGCTCCTGATGG
GGAGGCCACCAATGGGTATAGAAGGATCAACTCGGGTTTCTATTTAGCCC
ATAGCAACAAAAGAACAATGGAAGCCTTTGAAGATGTCATTGCTTATGCT
AAACGATCAAGAATGTCAGAACAGCCTTGCTTTTACGACGTAATCTGTGG
CAAAAAAGGAGAGAGAACGGTTGGAAACGATCGCTGCAATTACAAGGGCA
TGGCTTTGCAGCTACTGGACCGTGGGATATATCCCAACGGAAACACCTTC
GGTATGTGGGCGCTGCCGTCAGGAACAATACTCTTGCAGTTCCCAAACAT
ATTCATCTTGCACAACAACTGGATAAAAGGGTCCGTGGAGAAACGAAAGA
GGTTTGAGAAACACGGGTTCGTAATGTACAACAAGGATGTTGGGATTTGC
AAATATAGCCCTCTGTTCCTACCTTCCTTGCCACTATCGTTCTCGGAGTT
ACGATAG

Coding sequence (CDS) from alignment at NODE_531_length_22802_cov_4.496588:13728..15884-

>Gcaud3267.t1 ID=Gcaud3267.t1|Name=Gcaud3267.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2157bp|location=Sequence derived from alignment at NODE_531_length_22802_cov_4.496588:13728..15884- (Gracilaria caudata M_176_S67 male)
ATGCATGCGCCCAAGGTGCGAAGCCAACGTATGGAGGTTAGGCCAGATAA
GAGAGGTATGAGAAAGATGAAGCTTAACAAGATTTACCGAACGCCGCAGT
TTTATCTCTTTATATGGGCCTTGCTGTTACTACTTCTTTATGTAGACACG
AGCTTACTTCCATTCAGGCACAAGTCTTCGATTATTTTCATTGGAAGCCG
TTCGAATCTACGGTCTACAGGAATGGGAGCCCAGTCTGTACTTGAATCTG
AATCGTTAGAGGTTGAAATATTTTCGGCTCCAAAGCCGTTTCTCGATGAA
GATCGTGAAGTAAACCTGCGAGCAATCAGATCATGGCAAAGGTTAGTACC
AAGGCCTAAAATTACCCTCCTCGGACTCGAAACAGGATATGAAGAGGTAG
CCGTTGAGTATGGCCTAAACTTAAGGTGTGATGTTGACAAGAACTTCCTT
GGGGTCCCTCTTTTCAATTCTATGTTCTATATTGCTAATTCTTCAAAGGC
TGACGTTGCTGTGATTATCAACGGAGATATCATCTTATTAAATGATTTTA
TTTCAACACTAAGGAAGGTGAGATCAAGGTTTAAGGATTATCTCATGATC
AGTGCCCGATACGACCTCGAGAAACTGCCCGGCGATATAAGCGAAGAAAA
GGAGGACTACGACGATAAGTTGCGACAATATGTTCTAAGTCATGGGAAAC
TCCACACATACGGTGGAATGGACTTATGGGCCTGGAATCCGGACGGCCCT
CCCTTGTTCGATCAACATATGCCACCCTTTATCTTTGGTCGTGGAAAGTA
CGATAATTGGTTAACCCACGAAACTATCTCAGCAGGTCGGCGACAAGTCA
TTGACGCCTCGGAGGCAGTGATGAGCGTCCATATTCGCCATAATCACATC
CGTGTATCTCAGTCGGGAATTTCCAAATCCGAAGACATCTTTTGGTCCGA
AGGGAAGAGGTCCAAGTTTGAGCTTTTCATCAACATATATCTGAGTTCTC
GGTTTGGGTCATATAAAAACCAAATGGGAAACATTCTGTACGCGCCTTGG
CGCATTGCAAGATGTCTCGAAGCAAGTGGGTCTTGTTTGGTTCGGAGAAT
GAGACCTGGTATTTGCAACTGTGAGTATTCTCCGTCATCTGGAGAGACGC
AAACTGACCCTACTCTCAAACTTGGTTCAAGGGTAATTAAGTGTGGAAGT
ATTTCGCACGAGACGAAATCGGACTTCGAGATACCAGTTGTGCCAAATTC
GGACGGTAAACCAGAGTTTTTCGGGTTTCCCCTAACGCTAGGAACAGTTG
TGGAACGAATAGTTGAGGACAACACAGTGATTCTTTCGGCGATGAATTAT
GGATATCGGGAAATGATGATGAACTGGGTTTGCAACATGAGGCAGCTCAA
CATAACGAATTTTATCGTTGCAGCCTTTGATGAGCAACTGTACAGATATG
CATTTTTGCAGGGACTCCCAGTGTACTTCGAGAACACAGTGATATCAAAC
GCAAGCGTTTTGGATGCCGCTTATGGCACTGATGCTTTCAAGCAATTGAC
AAAACTAAAGTCCAGGATTGTGCTTCGAGTTTTGAAACTGGGATATGATG
TTGTATGGACTGACACGGACATCGTCTGGTTTCGAAATCCTCTGAATGAC
CTGAAAGGCTACGATGCCGACCTCGTCATTCAATCGAACGCTCCTGATGG
GGAGGCCACCAATGGGTATAGAAGGATCAACTCGGGTTTCTATTTAGCCC
ATAGCAACAAAAGAACAATGGAAGCCTTTGAAGATGTCATTGCTTATGCT
AAACGATCAAGAATGTCAGAACAGCCTTGCTTTTACGACGTAATCTGTGG
CAAAAAAGGAGAGAGAACGGTTGGAAACGATCGCTGCAATTACAAGGGCA
TGGCTTTGCAGCTACTGGACCGTGGGATATATCCCAACGGAAACACCTTC
GGTATGTGGGCGCTGCCGTCAGGAACAATACTCTTGCAGTTCCCAAACAT
ATTCATCTTGCACAACAACTGGATAAAAGGGTCCGTGGAGAAACGAAAGA
GGTTTGAGAAACACGGGTTCGTAATGTACAACAAGGATGTTGGGATTTGC
AAATATAGCCCTCTGTTCCTACCTTCCTTGCCACTATCGTTCTCGGAGTT
ACGATAG