Gcaud3265.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3265.t1
Unique NameGcaud3265.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_531_length_22802_cov_4.496588contigNODE_531_length_22802_cov_4.496588:8478..9338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog32049.SYNPCC7002_A1985
Preferred namehisB
PFAMsIGPD
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00932
KEGG koko:K01693
KEGG ReactionR03457
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue4.93e-98
EggNOG OGsCOG0131@1|root,COG0131@2|Bacteria,1G08H@1117|Cyanobacteria,1GYK0@1129|Synechococcus
EC4.2.1.19
DescriptionImidazoleglycerol-phosphate dehydratase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3265Gcaud3265Gracilaria caudata M_176_S67 malegeneNODE_531_length_22802_cov_4.496588 8478..9338 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3265.t1.start1Gcaud3265.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_531_length_22802_cov_4.496588 8478..8480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3265.t1.CDS1Gcaud3265.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_531_length_22802_cov_4.496588 8478..9338 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3265.t1.exon1Gcaud3265.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_531_length_22802_cov_4.496588 8478..9338 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3265.t1.stop1Gcaud3265.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_531_length_22802_cov_4.496588 9336..9338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3265.t1Gcaud3265.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_531_length_22802_cov_4.496588 8478..9338 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3265.t1 ID=Gcaud3265.t1|Name=Gcaud3265.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=287bp
MSEAQQPTRNSRRAPSKTKAQMPPPAFCSSPSFLSSLSTRRAKSCSKKPP
RVAPFCLASASPTPTPPSTSLASTPVTRPPRTATISRTTNETAITLTVNI
DGTGICDVDSGIPFLDHMLAQLCSHGLFDLHLRAKGDLWIDDHHTNEDIG
ITLGMAIAKALSDKKGICRFGHFVAPLDESLVEVVLDFSGRGHCEYSLDI
PTQRVGTYDTQLVREFYHAVAGNAQMTLHVIQRSGINSHHIIEASFKSFA
RAMRMAVEYDPRRINSVPSSKGVLTDAAALESKAST*
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spliced messenger RNA

>Gcaud3265.t1 ID=Gcaud3265.t1|Name=Gcaud3265.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_531_length_22802_cov_4.496588:8478..9338+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAAGCGCAACAGCCGACGCGCAACAGCCGACGTGCTCCATCGAA
GACCAAAGCCCAAATGCCGCCGCCCGCGTTTTGTTCGTCCCCGTCCTTTT
TGAGCTCGTTGTCGACGCGCAGAGCAAAAAGCTGCTCAAAAAAGCCACCG
CGAGTCGCTCCCTTCTGTCTGGCCTCAGCCTCCCCCACTCCCACTCCGCC
GTCCACATCTCTCGCGTCGACGCCCGTAACTCGTCCGCCAAGAACCGCCA
CCATCTCCCGCACCACTAATGAGACCGCCATAACTCTCACCGTCAATATC
GACGGCACTGGCATCTGTGACGTCGACTCTGGCATTCCGTTTCTCGATCA
CATGCTTGCGCAGCTTTGTTCACATGGTTTGTTCGATCTTCACTTGCGCG
CCAAGGGCGACCTGTGGATTGATGATCACCACACCAATGAGGATATTGGA
ATCACTCTTGGCATGGCTATCGCTAAAGCTCTTTCTGACAAGAAGGGAAT
CTGCCGTTTTGGCCATTTTGTCGCCCCGCTTGATGAAAGTCTCGTCGAGG
TTGTGCTTGACTTTTCGGGACGTGGCCACTGTGAGTACTCATTGGACATT
CCTACACAGAGAGTAGGAACTTACGACACACAGCTGGTTCGAGAATTCTA
TCATGCCGTCGCCGGCAACGCTCAGATGACTTTACATGTCATTCAAAGAT
CTGGCATCAACAGTCACCATATTATCGAGGCTAGCTTTAAGTCGTTTGCA
AGAGCTATGCGAATGGCTGTCGAGTATGACCCACGGCGTATCAATTCTGT
CCCAAGTTCCAAGGGCGTATTAACTGATGCTGCCGCGCTTGAATCTAAAG
CAAGCACATAA
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protein sequence of Gcaud3265.t1

>Gcaud3265.t1 ID=Gcaud3265.t1|Name=Gcaud3265.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
MSEAQQPTRNSRRAPSKTKAQMPPPAFCSSPSFLSSLSTRRAKSCSKKPP
RVAPFCLASASPTPTPPSTSLASTPVTRPPRTATISRTTNETAITLTVNI
DGTGICDVDSGIPFLDHMLAQLCSHGLFDLHLRAKGDLWIDDHHTNEDIG
ITLGMAIAKALSDKKGICRFGHFVAPLDESLVEVVLDFSGRGHCEYSLDI
PTQRVGTYDTQLVREFYHAVAGNAQMTLHVIQRSGINSHHIIEASFKSFA
RAMRMAVEYDPRRINSVPSSKGVLTDAAALESKAST*
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mRNA from alignment at NODE_531_length_22802_cov_4.496588:8478..9338+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3265.t1 ID=Gcaud3265.t1|Name=Gcaud3265.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_531_length_22802_cov_4.496588:8478..9338+ (Gracilaria caudata M_176_S67 male)
ATGTCGGAAGCGCAACAGCCGACGCGCAACAGCCGACGTGCTCCATCGAA
GACCAAAGCCCAAATGCCGCCGCCCGCGTTTTGTTCGTCCCCGTCCTTTT
TGAGCTCGTTGTCGACGCGCAGAGCAAAAAGCTGCTCAAAAAAGCCACCG
CGAGTCGCTCCCTTCTGTCTGGCCTCAGCCTCCCCCACTCCCACTCCGCC
GTCCACATCTCTCGCGTCGACGCCCGTAACTCGTCCGCCAAGAACCGCCA
CCATCTCCCGCACCACTAATGAGACCGCCATAACTCTCACCGTCAATATC
GACGGCACTGGCATCTGTGACGTCGACTCTGGCATTCCGTTTCTCGATCA
CATGCTTGCGCAGCTTTGTTCACATGGTTTGTTCGATCTTCACTTGCGCG
CCAAGGGCGACCTGTGGATTGATGATCACCACACCAATGAGGATATTGGA
ATCACTCTTGGCATGGCTATCGCTAAAGCTCTTTCTGACAAGAAGGGAAT
CTGCCGTTTTGGCCATTTTGTCGCCCCGCTTGATGAAAGTCTCGTCGAGG
TTGTGCTTGACTTTTCGGGACGTGGCCACTGTGAGTACTCATTGGACATT
CCTACACAGAGAGTAGGAACTTACGACACACAGCTGGTTCGAGAATTCTA
TCATGCCGTCGCCGGCAACGCTCAGATGACTTTACATGTCATTCAAAGAT
CTGGCATCAACAGTCACCATATTATCGAGGCTAGCTTTAAGTCGTTTGCA
AGAGCTATGCGAATGGCTGTCGAGTATGACCCACGGCGTATCAATTCTGT
CCCAAGTTCCAAGGGCGTATTAACTGATGCTGCCGCGCTTGAATCTAAAG
CAAGCACATAA
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Coding sequence (CDS) from alignment at NODE_531_length_22802_cov_4.496588:8478..9338+

>Gcaud3265.t1 ID=Gcaud3265.t1|Name=Gcaud3265.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=861bp|location=Sequence derived from alignment at NODE_531_length_22802_cov_4.496588:8478..9338+ (Gracilaria caudata M_176_S67 male)
ATGTCGGAAGCGCAACAGCCGACGCGCAACAGCCGACGTGCTCCATCGAA
GACCAAAGCCCAAATGCCGCCGCCCGCGTTTTGTTCGTCCCCGTCCTTTT
TGAGCTCGTTGTCGACGCGCAGAGCAAAAAGCTGCTCAAAAAAGCCACCG
CGAGTCGCTCCCTTCTGTCTGGCCTCAGCCTCCCCCACTCCCACTCCGCC
GTCCACATCTCTCGCGTCGACGCCCGTAACTCGTCCGCCAAGAACCGCCA
CCATCTCCCGCACCACTAATGAGACCGCCATAACTCTCACCGTCAATATC
GACGGCACTGGCATCTGTGACGTCGACTCTGGCATTCCGTTTCTCGATCA
CATGCTTGCGCAGCTTTGTTCACATGGTTTGTTCGATCTTCACTTGCGCG
CCAAGGGCGACCTGTGGATTGATGATCACCACACCAATGAGGATATTGGA
ATCACTCTTGGCATGGCTATCGCTAAAGCTCTTTCTGACAAGAAGGGAAT
CTGCCGTTTTGGCCATTTTGTCGCCCCGCTTGATGAAAGTCTCGTCGAGG
TTGTGCTTGACTTTTCGGGACGTGGCCACTGTGAGTACTCATTGGACATT
CCTACACAGAGAGTAGGAACTTACGACACACAGCTGGTTCGAGAATTCTA
TCATGCCGTCGCCGGCAACGCTCAGATGACTTTACATGTCATTCAAAGAT
CTGGCATCAACAGTCACCATATTATCGAGGCTAGCTTTAAGTCGTTTGCA
AGAGCTATGCGAATGGCTGTCGAGTATGACCCACGGCGTATCAATTCTGT
CCCAAGTTCCAAGGGCGTATTAACTGATGCTGCCGCGCTTGAATCTAAAG
CAAGCACATAA
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