Gcaud3264.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3264.t1
Unique NameGcaud3264.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_531_length_22802_cov_4.496588contigNODE_531_length_22802_cov_4.496588:5422..6924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ315CT
Preferred nameFTR1
PFAMsFTR1
Max annot lvl2759|Eukaryota
KEGG koko:K07243
KEGG TC2.A.108.1,2.A.108.2
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0008324,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010106,GO:0015075,GO:0015093,GO:0015318,GO:0015684,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032991,GO:0033212,GO:0033215,GO:0033554,GO:0033573,GO:0034220,GO:0034755,GO:0042592,GO:0042594,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0061840,GO:0065007,GO:0065008,GO:0070627,GO:0070838,GO:0071496,GO:0071944,GO:0072509,GO:0072511,GO:0097286,GO:0098655,GO:0098656,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098707,GO:0098711,GO:0098739,GO:0098771,GO:0098796,GO:0098797,GO:0099587,GO:1901684,GO:1902494,GO:1902495,GO:1903874,GO:1905862,GO:1990204,GO:1990351
Evalue4.14e-78
EggNOG OGsCOG0672@1|root,2QQWE@2759|Eukaryota
Descriptionhigh-affinity ferrous iron transmembrane transporter activity
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3264Gcaud3264Gracilaria caudata M_176_S67 malegeneNODE_531_length_22802_cov_4.496588 5422..6924 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3264.t1.stop1Gcaud3264.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_531_length_22802_cov_4.496588 5422..5424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3264.t1.CDS1Gcaud3264.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_531_length_22802_cov_4.496588 5422..6924 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3264.t1.exon1Gcaud3264.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_531_length_22802_cov_4.496588 5422..6924 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3264.t1.start1Gcaud3264.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_531_length_22802_cov_4.496588 6922..6924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3264.t1Gcaud3264.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_531_length_22802_cov_4.496588 5422..6924 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3264.t1 ID=Gcaud3264.t1|Name=Gcaud3264.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MTVFSIPAFFIVLREVLEACLVVGIVLAYINKIGATQYRRYVWWGAIGGI
VISGIVGLAFGIVVWTRGDQLFQGDAEKIFEGITFLIAASLLTWMIVWMM
VLGKNLRTKIEREVDEIVEDEEKSPLRRKLAIFFMVFVQVLREGIETVIF
LIGTANADENGGWRAIPLPGILAIIVGIGASFLVFRGLLQLDILKFFLVS
SFVLMAFAAGLVSHAFHELQEVDWFGPWKPAEERDWYNATMWSTKGCCHD
KENEFFAMLRALFGYQDTPTFVEWATYFGYWLIIVVVFICINWGLIRASR
SKMLSLAKQLSLSALLFTFVGFVFTLMNVTWIGVSTMTLGFILSIITVLP
LYESTLRLLKPIRSSRRVLLLASGVGWALLTAFMFVLHMVQLECEGKEDR
CNLDMFFFFGLIFNPDFNIQGRQEKSWPAVAVLSVSIVITVYFFSALAFT
VIMSSFNVDSDGYYVGDDGVAGKLLDDDETKLDVDEDVSSPVAEQVGAAV
*
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spliced messenger RNA

>Gcaud3264.t1 ID=Gcaud3264.t1|Name=Gcaud3264.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_531_length_22802_cov_4.496588:5422..6924- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTGTTCTCGATCCCGGCGTTTTTCATTGTTTTGCGAGAAGTGTT
GGAGGCTTGTCTCGTCGTTGGTATTGTACTGGCATACATTAATAAGATTG
GTGCCACTCAATACCGTCGCTACGTATGGTGGGGTGCCATTGGCGGTATT
GTAATCTCTGGGATAGTTGGACTTGCCTTCGGAATTGTCGTGTGGACCAG
GGGAGATCAGCTTTTCCAGGGTGATGCTGAAAAGATCTTTGAGGGTATTA
CCTTCTTAATCGCCGCTTCATTGCTCACATGGATGATTGTTTGGATGATG
GTCTTGGGCAAGAATTTGCGTACCAAGATTGAACGCGAAGTCGATGAGAT
TGTCGAAGATGAAGAAAAGAGCCCACTGCGACGCAAGCTTGCCATCTTCT
TCATGGTATTCGTGCAGGTATTGAGGGAGGGTATTGAGACCGTTATCTTC
CTCATCGGAACTGCCAACGCCGACGAAAACGGAGGCTGGCGCGCAATCCC
TCTGCCAGGAATCCTGGCCATCATCGTCGGTATTGGTGCTTCCTTCCTCG
TGTTCAGAGGATTGCTTCAATTGGATATTCTCAAATTCTTCCTTGTGTCT
AGCTTTGTATTGATGGCATTTGCTGCGGGATTGGTCAGTCACGCCTTCCA
TGAACTACAGGAGGTGGACTGGTTTGGTCCTTGGAAGCCTGCCGAGGAAC
GTGATTGGTACAATGCGACCATGTGGTCTACAAAAGGCTGCTGTCATGAC
AAGGAAAATGAATTCTTTGCTATGTTGCGGGCTCTGTTTGGATATCAGGA
CACGCCTACGTTTGTCGAGTGGGCTACCTACTTCGGGTACTGGTTGATTA
TTGTCGTGGTGTTCATCTGCATCAACTGGGGTCTGATTCGCGCATCGCGT
TCCAAGATGTTGTCCCTGGCGAAGCAGCTGTCGCTCTCGGCTCTGTTATT
CACCTTTGTCGGATTCGTGTTCACTCTCATGAACGTCACATGGATTGGTG
TCAGTACCATGACTCTCGGATTCATACTGTCTATCATTACTGTGCTGCCC
TTGTATGAAAGCACCTTGCGTCTGTTAAAACCGATAAGAAGCTCCAGAAG
GGTGCTGCTGTTGGCCAGTGGCGTGGGATGGGCCTTGCTCACGGCATTTA
TGTTTGTGCTTCACATGGTTCAGTTGGAATGCGAAGGCAAGGAAGACCGA
TGCAACCTTGACATGTTCTTCTTCTTCGGACTCATTTTCAATCCCGACTT
TAACATCCAAGGACGACAGGAGAAGTCTTGGCCGGCTGTCGCTGTACTTT
CCGTATCCATAGTTATCACGGTGTATTTCTTCAGTGCTCTCGCATTTACA
GTTATCATGAGTTCTTTCAACGTTGATTCTGATGGCTACTACGTTGGGGA
CGATGGTGTCGCGGGAAAGCTCTTGGATGACGATGAGACGAAATTAGACG
TTGATGAGGATGTGAGCTCTCCAGTTGCTGAGCAGGTGGGTGCGGCGGTG
TGA
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protein sequence of Gcaud3264.t1

>Gcaud3264.t1 ID=Gcaud3264.t1|Name=Gcaud3264.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MTVFSIPAFFIVLREVLEACLVVGIVLAYINKIGATQYRRYVWWGAIGGI
VISGIVGLAFGIVVWTRGDQLFQGDAEKIFEGITFLIAASLLTWMIVWMM
VLGKNLRTKIEREVDEIVEDEEKSPLRRKLAIFFMVFVQVLREGIETVIF
LIGTANADENGGWRAIPLPGILAIIVGIGASFLVFRGLLQLDILKFFLVS
SFVLMAFAAGLVSHAFHELQEVDWFGPWKPAEERDWYNATMWSTKGCCHD
KENEFFAMLRALFGYQDTPTFVEWATYFGYWLIIVVVFICINWGLIRASR
SKMLSLAKQLSLSALLFTFVGFVFTLMNVTWIGVSTMTLGFILSIITVLP
LYESTLRLLKPIRSSRRVLLLASGVGWALLTAFMFVLHMVQLECEGKEDR
CNLDMFFFFGLIFNPDFNIQGRQEKSWPAVAVLSVSIVITVYFFSALAFT
VIMSSFNVDSDGYYVGDDGVAGKLLDDDETKLDVDEDVSSPVAEQVGAAV
*
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mRNA from alignment at NODE_531_length_22802_cov_4.496588:5422..6924-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3264.t1 ID=Gcaud3264.t1|Name=Gcaud3264.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_531_length_22802_cov_4.496588:5422..6924- (Gracilaria caudata M_176_S67 male)
ATGACTGTGTTCTCGATCCCGGCGTTTTTCATTGTTTTGCGAGAAGTGTT
GGAGGCTTGTCTCGTCGTTGGTATTGTACTGGCATACATTAATAAGATTG
GTGCCACTCAATACCGTCGCTACGTATGGTGGGGTGCCATTGGCGGTATT
GTAATCTCTGGGATAGTTGGACTTGCCTTCGGAATTGTCGTGTGGACCAG
GGGAGATCAGCTTTTCCAGGGTGATGCTGAAAAGATCTTTGAGGGTATTA
CCTTCTTAATCGCCGCTTCATTGCTCACATGGATGATTGTTTGGATGATG
GTCTTGGGCAAGAATTTGCGTACCAAGATTGAACGCGAAGTCGATGAGAT
TGTCGAAGATGAAGAAAAGAGCCCACTGCGACGCAAGCTTGCCATCTTCT
TCATGGTATTCGTGCAGGTATTGAGGGAGGGTATTGAGACCGTTATCTTC
CTCATCGGAACTGCCAACGCCGACGAAAACGGAGGCTGGCGCGCAATCCC
TCTGCCAGGAATCCTGGCCATCATCGTCGGTATTGGTGCTTCCTTCCTCG
TGTTCAGAGGATTGCTTCAATTGGATATTCTCAAATTCTTCCTTGTGTCT
AGCTTTGTATTGATGGCATTTGCTGCGGGATTGGTCAGTCACGCCTTCCA
TGAACTACAGGAGGTGGACTGGTTTGGTCCTTGGAAGCCTGCCGAGGAAC
GTGATTGGTACAATGCGACCATGTGGTCTACAAAAGGCTGCTGTCATGAC
AAGGAAAATGAATTCTTTGCTATGTTGCGGGCTCTGTTTGGATATCAGGA
CACGCCTACGTTTGTCGAGTGGGCTACCTACTTCGGGTACTGGTTGATTA
TTGTCGTGGTGTTCATCTGCATCAACTGGGGTCTGATTCGCGCATCGCGT
TCCAAGATGTTGTCCCTGGCGAAGCAGCTGTCGCTCTCGGCTCTGTTATT
CACCTTTGTCGGATTCGTGTTCACTCTCATGAACGTCACATGGATTGGTG
TCAGTACCATGACTCTCGGATTCATACTGTCTATCATTACTGTGCTGCCC
TTGTATGAAAGCACCTTGCGTCTGTTAAAACCGATAAGAAGCTCCAGAAG
GGTGCTGCTGTTGGCCAGTGGCGTGGGATGGGCCTTGCTCACGGCATTTA
TGTTTGTGCTTCACATGGTTCAGTTGGAATGCGAAGGCAAGGAAGACCGA
TGCAACCTTGACATGTTCTTCTTCTTCGGACTCATTTTCAATCCCGACTT
TAACATCCAAGGACGACAGGAGAAGTCTTGGCCGGCTGTCGCTGTACTTT
CCGTATCCATAGTTATCACGGTGTATTTCTTCAGTGCTCTCGCATTTACA
GTTATCATGAGTTCTTTCAACGTTGATTCTGATGGCTACTACGTTGGGGA
CGATGGTGTCGCGGGAAAGCTCTTGGATGACGATGAGACGAAATTAGACG
TTGATGAGGATGTGAGCTCTCCAGTTGCTGAGCAGGTGGGTGCGGCGGTG
TGA
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Coding sequence (CDS) from alignment at NODE_531_length_22802_cov_4.496588:5422..6924-

>Gcaud3264.t1 ID=Gcaud3264.t1|Name=Gcaud3264.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_531_length_22802_cov_4.496588:5422..6924- (Gracilaria caudata M_176_S67 male)
ATGACTGTGTTCTCGATCCCGGCGTTTTTCATTGTTTTGCGAGAAGTGTT
GGAGGCTTGTCTCGTCGTTGGTATTGTACTGGCATACATTAATAAGATTG
GTGCCACTCAATACCGTCGCTACGTATGGTGGGGTGCCATTGGCGGTATT
GTAATCTCTGGGATAGTTGGACTTGCCTTCGGAATTGTCGTGTGGACCAG
GGGAGATCAGCTTTTCCAGGGTGATGCTGAAAAGATCTTTGAGGGTATTA
CCTTCTTAATCGCCGCTTCATTGCTCACATGGATGATTGTTTGGATGATG
GTCTTGGGCAAGAATTTGCGTACCAAGATTGAACGCGAAGTCGATGAGAT
TGTCGAAGATGAAGAAAAGAGCCCACTGCGACGCAAGCTTGCCATCTTCT
TCATGGTATTCGTGCAGGTATTGAGGGAGGGTATTGAGACCGTTATCTTC
CTCATCGGAACTGCCAACGCCGACGAAAACGGAGGCTGGCGCGCAATCCC
TCTGCCAGGAATCCTGGCCATCATCGTCGGTATTGGTGCTTCCTTCCTCG
TGTTCAGAGGATTGCTTCAATTGGATATTCTCAAATTCTTCCTTGTGTCT
AGCTTTGTATTGATGGCATTTGCTGCGGGATTGGTCAGTCACGCCTTCCA
TGAACTACAGGAGGTGGACTGGTTTGGTCCTTGGAAGCCTGCCGAGGAAC
GTGATTGGTACAATGCGACCATGTGGTCTACAAAAGGCTGCTGTCATGAC
AAGGAAAATGAATTCTTTGCTATGTTGCGGGCTCTGTTTGGATATCAGGA
CACGCCTACGTTTGTCGAGTGGGCTACCTACTTCGGGTACTGGTTGATTA
TTGTCGTGGTGTTCATCTGCATCAACTGGGGTCTGATTCGCGCATCGCGT
TCCAAGATGTTGTCCCTGGCGAAGCAGCTGTCGCTCTCGGCTCTGTTATT
CACCTTTGTCGGATTCGTGTTCACTCTCATGAACGTCACATGGATTGGTG
TCAGTACCATGACTCTCGGATTCATACTGTCTATCATTACTGTGCTGCCC
TTGTATGAAAGCACCTTGCGTCTGTTAAAACCGATAAGAAGCTCCAGAAG
GGTGCTGCTGTTGGCCAGTGGCGTGGGATGGGCCTTGCTCACGGCATTTA
TGTTTGTGCTTCACATGGTTCAGTTGGAATGCGAAGGCAAGGAAGACCGA
TGCAACCTTGACATGTTCTTCTTCTTCGGACTCATTTTCAATCCCGACTT
TAACATCCAAGGACGACAGGAGAAGTCTTGGCCGGCTGTCGCTGTACTTT
CCGTATCCATAGTTATCACGGTGTATTTCTTCAGTGCTCTCGCATTTACA
GTTATCATGAGTTCTTTCAACGTTGATTCTGATGGCTACTACGTTGGGGA
CGATGGTGTCGCGGGAAAGCTCTTGGATGACGATGAGACGAAATTAGACG
TTGATGAGGATGTGAGCTCTCCAGTTGCTGAGCAGGTGGGTGCGGCGGTG
TGA
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