Gcaud3256.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3256.t2
Unique Name	Gcaud3256.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	586

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_138_length_44555_cov_4.790842	contig	NODE_138_length_44555_cov_4.790842:26378..29274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10228.TriadP59800
Preferred name	EIF1AD
PFAMs	eIF-1a
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K15025
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Evalue	1.36e-08
EggNOG OGs	KOG2925@1\|root,KOG2925@2759\|Eukaryota,3A48V@33154\|Opisthokonta,3BRJI@33208\|Metazoa
Description	translation initiation factor activity
COG category	J
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3256	Gcaud3256	Gracilaria caudata M_176_S67 male	gene	NODE_138_length_44555_cov_4.790842 26378..29274 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3256.t2	Gcaud3256.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_138_length_44555_cov_4.790842 26378..29274 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3256.t2.start1	Gcaud3256.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_138_length_44555_cov_4.790842 26378..26380 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3256.t2.CDS1	Gcaud3256.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_138_length_44555_cov_4.790842 26378..27589 +
Gcaud3256.t2.CDS2	Gcaud3256.t2.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_138_length_44555_cov_4.790842 28462..28491 +
Gcaud3256.t2.CDS3	Gcaud3256.t2.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_138_length_44555_cov_4.790842 28759..29274 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3256.t2.exon1	Gcaud3256.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_138_length_44555_cov_4.790842 26378..27589 +
Gcaud3256.t2.exon2	Gcaud3256.t2.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_138_length_44555_cov_4.790842 28462..28491 +
Gcaud3256.t2.exon3	Gcaud3256.t2.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_138_length_44555_cov_4.790842 28759..29274 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3256.t2.intron1	Gcaud3256.t2.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_138_length_44555_cov_4.790842 27590..28461 +
Gcaud3256.t2.intron2	Gcaud3256.t2.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_138_length_44555_cov_4.790842 28492..28758 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3256.t2.stop1	Gcaud3256.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_138_length_44555_cov_4.790842 29272..29274 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_138_length_44555_cov_4.790842:26378..29274+
coding sequence from alignment at NODE_138_length_44555_cov_4.790842:26378..29274+

mRNA sequence

>Gcaud3256.t2 ID=Gcaud3256.t2|Name=Gcaud3256.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=586bp
MTATSTLSARAFPSFAVLIQSRIEAPWLCPLLAPTKSTLESSPHSSVPST
LDSWIPDTLALSTNMADHNSFTPIRSRVPSLPFVDRESFAARSMSQTLGT
GPESPVLAPYVQEQYALLEQVLRKDDTSGPNLASETKIERSSDPIGSPLI
EEFYFSDIMTDAATTSHNVLQASLKTAERLYSHEADVSQKHISLSEPSID
LRSLDSAAAGTDLSSGLDSFCASNETETPSRGEQQQQPKVLGIFGERKNE
EGVDEYSVHPEAIRQFRAIFPFNTAPISRPVLSSERESGIEDDERKDQED
ESHGVLLTNKIDGSCGSRGHSPSSNISMTGPRIGSHPDLYENLSADMQAR
IDALARKIAAMPRRKLRESLSEGVTIEDVEPLMIVNRDELAGMLGLGVTT
WKMFGGISFRIHIEVMTAPGKRRQRVQLLSEQPTLLQGQHVAQIVQALGE
NTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHAEARSRIGGEIE
TIVLSTFLSSISKEEFWPERFRRAPEIDGREKTADSETIEKEEEESTDDD
TEEGWNIGEGNPNRSGWEHQPSSSGESSSDEEDDR*

spliced messenger RNA

>Gcaud3256.t2 ID=Gcaud3256.t2|Name=Gcaud3256.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1758bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:26378..29274+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCGACCAGCACTCTTTCGGCGCGTGCTTTCCCATCTTTTGCCGT
GCTGATTCAATCTCGAATCGAAGCGCCCTGGCTCTGTCCTCTGCTAGCCC
CGACAAAATCTACATTGGAATCGTCTCCACATTCCTCTGTGCCCAGCACA
TTGGATTCCTGGATTCCGGACACCTTAGCACTATCGACAAACATGGCTGA
TCACAACTCTTTCACTCCCATACGCTCGCGGGTTCCATCACTTCCGTTTG
TTGATCGCGAGTCTTTTGCCGCGAGAAGTATGTCTCAAACTCTGGGTACA
GGCCCAGAAAGTCCCGTGCTTGCTCCTTATGTCCAGGAGCAGTACGCCCT
GCTGGAACAGGTATTAAGAAAGGATGACACCAGTGGCCCCAATCTTGCAT
CTGAGACAAAGATAGAGCGCTCGTCTGATCCAATTGGTTCTCCTCTCATC
GAAGAGTTTTATTTCAGTGATATAATGACCGACGCGGCAACAACCTCACA
TAATGTCCTCCAGGCTTCTTTGAAAACAGCTGAGCGCTTGTACTCGCATG
AAGCCGATGTTTCTCAGAAACATATTTCCCTTTCTGAACCTTCAATTGAT
CTTCGTTCTTTGGATTCTGCAGCGGCTGGGACGGATCTGTCAAGTGGTTT
GGATAGCTTTTGTGCATCGAATGAAACGGAGACGCCATCTCGCGGGGAAC
AGCAGCAACAACCAAAGGTTCTGGGCATATTTGGAGAACGAAAGAATGAA
GAAGGGGTTGACGAGTATTCTGTTCACCCAGAAGCTATTCGTCAGTTTCG
CGCAATCTTTCCTTTTAATACAGCGCCAATTTCTCGCCCTGTTCTCAGCT
CAGAGAGGGAATCTGGCATTGAGGACGACGAAAGGAAAGACCAGGAAGAT
GAAAGTCATGGTGTGCTGTTGACAAACAAGATTGACGGCTCATGTGGGTC
AAGAGGACATTCTCCTTCTAGCAATATATCAATGACTGGCCCTCGAATTG
GAAGTCATCCTGATCTATACGAGAACCTTAGTGCTGATATGCAAGCACGC
ATAGATGCGCTGGCCAGGAAAATTGCTGCAATGCCGCGACGAAAGTTGAG
AGAAAGCCTTTCAGAAGGAGTGACAATCGAAGACGTGGAACCACTCATGA
TCGTCAACAGAGATGAACTGGCTGGAATGTTGGGATTAGGGGTAACAACG
TGGAAAATGTTCGGTGGCATATCTTTCAGAATCCACATTGAAGTTATGAC
TGCTCCAGGGAAGCGCCGTCAACGTGTCCAACTTCTGTCCGAACAACCAA
CTCTGCTTCAAGGGCAGCATGTGGCACAAATCGTTCAAGCACTTGGCGAA
AACACCTATCAAGTATTACTCGGAGATGGAAGAACAAGCTTGTATCGTTT
GCCAAAGCGGCTACGCCAAGTTGCGTACATTCGTCGCGGGAGCTTCGTTT
TTGTTCGTGATCACGCTGAGGCGCGAAGCCGCATCGGCGGTGAAATTGAA
ACCATCGTTCTGAGTACATTCTTGTCATCTATCAGCAAGGAGGAATTCTG
GCCTGAACGTTTTCGTCGGGCGCCAGAGATTGATGGACGCGAGAAAACAG
CGGATTCAGAAACAATCGAAAAAGAGGAGGAAGAAAGCACCGATGACGAT
ACTGAAGAAGGGTGGAATATTGGGGAAGGGAATCCAAACCGAAGTGGTTG
GGAGCATCAACCTTCTTCATCTGGGGAGAGCTCCTCAGACGAAGAAGATG
ACAGATGA

protein sequence of Gcaud3256.t2

>Gcaud3256.t2 ID=Gcaud3256.t2|Name=Gcaud3256.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=586bp
MTATSTLSARAFPSFAVLIQSRIEAPWLCPLLAPTKSTLESSPHSSVPST
LDSWIPDTLALSTNMADHNSFTPIRSRVPSLPFVDRESFAARSMSQTLGT
GPESPVLAPYVQEQYALLEQVLRKDDTSGPNLASETKIERSSDPIGSPLI
EEFYFSDIMTDAATTSHNVLQASLKTAERLYSHEADVSQKHISLSEPSID
LRSLDSAAAGTDLSSGLDSFCASNETETPSRGEQQQQPKVLGIFGERKNE
EGVDEYSVHPEAIRQFRAIFPFNTAPISRPVLSSERESGIEDDERKDQED
ESHGVLLTNKIDGSCGSRGHSPSSNISMTGPRIGSHPDLYENLSADMQAR
IDALARKIAAMPRRKLRESLSEGVTIEDVEPLMIVNRDELAGMLGLGVTT
WKMFGGISFRIHIEVMTAPGKRRQRVQLLSEQPTLLQGQHVAQIVQALGE
NTYQVLLGDGRTSLYRLPKRLRQVAYIRRGSFVFVRDHAEARSRIGGEIE
TIVLSTFLSSISKEEFWPERFRRAPEIDGREKTADSETIEKEEEESTDDD
TEEGWNIGEGNPNRSGWEHQPSSSGESSSDEEDDR*

mRNA from alignment at NODE_138_length_44555_cov_4.790842:26378..29274+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3256.t2 ID=Gcaud3256.t2|Name=Gcaud3256.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2897bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:26378..29274+ (Gracilaria caudata M_176_S67 male)
ATGACCGCGACCAGCACTCTTTCGGCGCGTGCTTTCCCATCTTTTGCCGT
GCTGATTCAATCTCGAATCGAAGCGCCCTGGCTCTGTCCTCTGCTAGCCC
CGACAAAATCTACATTGGAATCGTCTCCACATTCCTCTGTGCCCAGCACA
TTGGATTCCTGGATTCCGGACACCTTAGCACTATCGACAAACATGGCTGA
TCACAACTCTTTCACTCCCATACGCTCGCGGGTTCCATCACTTCCGTTTG
TTGATCGCGAGTCTTTTGCCGCGAGAAGTATGTCTCAAACTCTGGGTACA
GGCCCAGAAAGTCCCGTGCTTGCTCCTTATGTCCAGGAGCAGTACGCCCT
GCTGGAACAGGTATTAAGAAAGGATGACACCAGTGGCCCCAATCTTGCAT
CTGAGACAAAGATAGAGCGCTCGTCTGATCCAATTGGTTCTCCTCTCATC
GAAGAGTTTTATTTCAGTGATATAATGACCGACGCGGCAACAACCTCACA
TAATGTCCTCCAGGCTTCTTTGAAAACAGCTGAGCGCTTGTACTCGCATG
AAGCCGATGTTTCTCAGAAACATATTTCCCTTTCTGAACCTTCAATTGAT
CTTCGTTCTTTGGATTCTGCAGCGGCTGGGACGGATCTGTCAAGTGGTTT
GGATAGCTTTTGTGCATCGAATGAAACGGAGACGCCATCTCGCGGGGAAC
AGCAGCAACAACCAAAGGTTCTGGGCATATTTGGAGAACGAAAGAATGAA
GAAGGGGTTGACGAGTATTCTGTTCACCCAGAAGCTATTCGTCAGTTTCG
CGCAATCTTTCCTTTTAATACAGCGCCAATTTCTCGCCCTGTTCTCAGCT
CAGAGAGGGAATCTGGCATTGAGGACGACGAAAGGAAAGACCAGGAAGAT
GAAAGTCATGGTGTGCTGTTGACAAACAAGATTGACGGCTCATGTGGGTC
AAGAGGACATTCTCCTTCTAGCAATATATCAATGACTGGCCCTCGAATTG
GAAGTCATCCTGATCTATACGAGAACCTTAGTGCTGATATGCAAGCACGC
ATAGATGCGCTGGCCAGGAAAATTGCTGCAATGCCGCGACGAAAGTTGAG
AGAAAGCCTTTCAGAAGGAGTGACAATCGAAGACGTGGAACCACTCATGA
TCGTCAACAGAGATGAACTGGCTGGAATGTTGGGATTAGGGGTAACAACG
TGGAAAATGTTCGTCCATAACTCTCTGGGAGTGCCTCGATGGCCAGCTCG
GGCTCTAAAGTCTCAAACTGTGAAGGAAAGCAAACTTCTACAGAGGCTGA
GAGAATCGGAAGCGCGTGGAGATCATGACAGTGTTCTTCGATTAAGGAAG
GAACACGCTAGGGTAGTTCAGAATCACCTGAAGAGAAGAAGGTTATTTCG
GGCGGAAGCAAAGCAGAGGTCCGAGAAGAATTGTATCAGGAAGAAACGTC
GCTAAACCAAACTTATGGTTTGGTAAGATGGGATATTATATTCTAAGAAT
GAGCACAAGATGAAGATGATGGTTCGCAACTTCTGTTCCTCTAACTAGAC
TATACATGACTGTCTGTAGCAATACTCATAATAAAAAGATCCGATTGTAT
CTCCTGACGATCATCGGTAGGGAGAGTTCCATAAGGGGACGAAGTTTTCA
TACTTTTTCGATGCAAAGAACTCGTAGGCTTCAAGAGCAAGAGATAGTGT
CGAAATATGCCGGAGTCCTCTATAAGGGTCTGCTCTCCTTTCTTCGGTCT
CCTTTTCACATTTATTCATTTTACTCCCAGTATCATTGCCGTCTTTGCCT
GATGGCATCTATCCTAACCTTCTACGAAGGTACGTGTATACAGTACGAGC
CACCTAGAGAAAGAATGATACCCTGTAATGTTGAAGTTCCGCTCAAACTG
GTGATTGGAGGAAAAGTGCAAATGCATTTTCCTTTCGACAAAACTCCTGT
TTTGGATTTGCAGCACTGCACAAAAAATTGAAAATACGAAGGGGAACGCT
ACCGACGGTAGAACGCTAGCGTTCGCTAGCACTCGGCGGGTGCCATGACA
TGGCCATTCTTCATATCATGTCCTTGCCCAAAAGGGTGGCATATCTTTCA
GAATCCACATTGAAGTGCGTCCTCGTGCTCCTGGCGGCGAAGAGTTTCTC
ACACTCGAGGGCACAAACGACTCCTTTGTGTACGGCAGCGCCTTAAGTTG
AGCAGAGAGTCTCTGAATGTGGCACTGAGCAGCCGGAAACTGTGGAGGTG
CAAGCAGTCCATGCCACGTTTTCGTTTTCCAGCTTGTACATCATCCTTTT
ACTAAGATCCTTGTGGGAAGTTTGGGCAGTCCAAGATTAATCTACTTCAG
AACAAAAGCTGACTTTTTCCCTTTGTTTTAGGTTATGACTGCTCCAGGGA
AGCGCCGTCAACGTGTCCAACTTCTGTCCGAACAACCAACTCTGCTTCAA
GGGCAGCATGTGGCACAAATCGTTCAAGCACTTGGCGAAAACACCTATCA
AGTATTACTCGGAGATGGAAGAACAAGCTTGTATCGTTTGCCAAAGCGGC
TACGCCAAGTTGCGTACATTCGTCGCGGGAGCTTCGTTTTTGTTCGTGAT
CACGCTGAGGCGCGAAGCCGCATCGGCGGTGAAATTGAAACCATCGTTCT
GAGTACATTCTTGTCATCTATCAGCAAGGAGGAATTCTGGCCTGAACGTT
TTCGTCGGGCGCCAGAGATTGATGGACGCGAGAAAACAGCGGATTCAGAA
ACAATCGAAAAAGAGGAGGAAGAAAGCACCGATGACGATACTGAAGAAGG
GTGGAATATTGGGGAAGGGAATCCAAACCGAAGTGGTTGGGAGCATCAAC
CTTCTTCATCTGGGGAGAGCTCCTCAGACGAAGAAGATGACAGATGA

Coding sequence (CDS) from alignment at NODE_138_length_44555_cov_4.790842:26378..29274+

>Gcaud3256.t2 ID=Gcaud3256.t2|Name=Gcaud3256.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1758bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:26378..29274+ (Gracilaria caudata M_176_S67 male)
ATGACCGCGACCAGCACTCTTTCGGCGCGTGCTTTCCCATCTTTTGCCGT
GCTGATTCAATCTCGAATCGAAGCGCCCTGGCTCTGTCCTCTGCTAGCCC
CGACAAAATCTACATTGGAATCGTCTCCACATTCCTCTGTGCCCAGCACA
TTGGATTCCTGGATTCCGGACACCTTAGCACTATCGACAAACATGGCTGA
TCACAACTCTTTCACTCCCATACGCTCGCGGGTTCCATCACTTCCGTTTG
TTGATCGCGAGTCTTTTGCCGCGAGAAGTATGTCTCAAACTCTGGGTACA
GGCCCAGAAAGTCCCGTGCTTGCTCCTTATGTCCAGGAGCAGTACGCCCT
GCTGGAACAGGTATTAAGAAAGGATGACACCAGTGGCCCCAATCTTGCAT
CTGAGACAAAGATAGAGCGCTCGTCTGATCCAATTGGTTCTCCTCTCATC
GAAGAGTTTTATTTCAGTGATATAATGACCGACGCGGCAACAACCTCACA
TAATGTCCTCCAGGCTTCTTTGAAAACAGCTGAGCGCTTGTACTCGCATG
AAGCCGATGTTTCTCAGAAACATATTTCCCTTTCTGAACCTTCAATTGAT
CTTCGTTCTTTGGATTCTGCAGCGGCTGGGACGGATCTGTCAAGTGGTTT
GGATAGCTTTTGTGCATCGAATGAAACGGAGACGCCATCTCGCGGGGAAC
AGCAGCAACAACCAAAGGTTCTGGGCATATTTGGAGAACGAAAGAATGAA
GAAGGGGTTGACGAGTATTCTGTTCACCCAGAAGCTATTCGTCAGTTTCG
CGCAATCTTTCCTTTTAATACAGCGCCAATTTCTCGCCCTGTTCTCAGCT
CAGAGAGGGAATCTGGCATTGAGGACGACGAAAGGAAAGACCAGGAAGAT
GAAAGTCATGGTGTGCTGTTGACAAACAAGATTGACGGCTCATGTGGGTC
AAGAGGACATTCTCCTTCTAGCAATATATCAATGACTGGCCCTCGAATTG
GAAGTCATCCTGATCTATACGAGAACCTTAGTGCTGATATGCAAGCACGC
ATAGATGCGCTGGCCAGGAAAATTGCTGCAATGCCGCGACGAAAGTTGAG
AGAAAGCCTTTCAGAAGGAGTGACAATCGAAGACGTGGAACCACTCATGA
TCGTCAACAGAGATGAACTGGCTGGAATGTTGGGATTAGGGGTAACAACG
TGGAAAATGTTCGGTGGCATATCTTTCAGAATCCACATTGAAGTTATGAC
TGCTCCAGGGAAGCGCCGTCAACGTGTCCAACTTCTGTCCGAACAACCAA
CTCTGCTTCAAGGGCAGCATGTGGCACAAATCGTTCAAGCACTTGGCGAA
AACACCTATCAAGTATTACTCGGAGATGGAAGAACAAGCTTGTATCGTTT
GCCAAAGCGGCTACGCCAAGTTGCGTACATTCGTCGCGGGAGCTTCGTTT
TTGTTCGTGATCACGCTGAGGCGCGAAGCCGCATCGGCGGTGAAATTGAA
ACCATCGTTCTGAGTACATTCTTGTCATCTATCAGCAAGGAGGAATTCTG
GCCTGAACGTTTTCGTCGGGCGCCAGAGATTGATGGACGCGAGAAAACAG
CGGATTCAGAAACAATCGAAAAAGAGGAGGAAGAAAGCACCGATGACGAT
ACTGAAGAAGGGTGGAATATTGGGGAAGGGAATCCAAACCGAAGTGGTTG
GGAGCATCAACCTTCTTCATCTGGGGAGAGCTCCTCAGACGAAGAAGATG
ACAGATGA