Gcaud3254.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3254.t1
Unique Name	Gcaud3254.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	551

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_138_length_44555_cov_4.790842	contig	NODE_138_length_44555_cov_4.790842:18183..19835 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3254	Gcaud3254	Gracilaria caudata M_176_S67 male	gene	NODE_138_length_44555_cov_4.790842 18183..19835 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3254.t1.stop1	Gcaud3254.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_138_length_44555_cov_4.790842 18183..18185 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3254.t1.CDS1	Gcaud3254.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_138_length_44555_cov_4.790842 18183..19835 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3254.t1.exon1	Gcaud3254.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_138_length_44555_cov_4.790842 18183..19835 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3254.t1.start1	Gcaud3254.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_138_length_44555_cov_4.790842 19833..19835 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3254.t1	Gcaud3254.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_138_length_44555_cov_4.790842 18183..19835 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_138_length_44555_cov_4.790842:18183..19835-
coding sequence from alignment at NODE_138_length_44555_cov_4.790842:18183..19835-

mRNA sequence

>Gcaud3254.t1 ID=Gcaud3254.t1|Name=Gcaud3254.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=551bp
MATSDVEWNRHSLTRLLHVLVLSRGSLTLAAALLPDMSTGVIRNALRRVS
LAHRNPSSWSDSKHIAFVLHRVAGHSVPPASPPPPTPPSSSVSKRVALQL
VPATARDAELVSAGKHYPFLEIKLRRRRPLWDVYAHVYTKWGLPIRLLTL
DHLSIHTPVASILPPASELVRLQYLVTNVPVDFSALSCILPSGHQPDPPI
NQPLTTDSEDHFWTQNTASHLPMFDFASDSLFNVSSTPTDSYPPRIEPCA
PLMKKRRVIAPLSLHPHHHPQKKKKPSRPRTRPSPPQNKSIIPLPSARPT
IQKRQKTGEKAVLNRLRSHLEQLSSKASEADMTCNECTPVPASKANVDAN
KPNFSLFAASDSVFGTRQSPSLHRPFICNGTDMEPSRSGAGPAPLPEESL
VPPLPSARPTVQKVQSAGEKSVLNRLRCHLEQLSSPNSSEAAGTSNGDTP
VPASSIVADTNNPNFPFLGASDSIFAMGLSTPLQQPTIGANEVGHNGATD
VHDAIDLIVRDELAVDLNHGTHFDASEAERVTVQAAPDASLNFSALFHDL
*

spliced messenger RNA

>Gcaud3254.t1 ID=Gcaud3254.t1|Name=Gcaud3254.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:18183..19835- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACTTCTGATGTCGAATGGAATCGCCACTCGCTCACACGTCTTCT
TCACGTCCTCGTGCTCTCGCGCGGCTCACTCACGCTGGCCGCCGCGCTGC
TGCCCGACATGTCCACTGGCGTGATTCGCAACGCACTCCGTCGAGTCTCG
CTCGCGCATCGCAACCCCTCGTCTTGGTCCGATTCAAAGCATATTGCCTT
CGTGCTTCATCGTGTCGCCGGCCACAGTGTGCCTCCAGCTTCGCCTCCAC
CGCCGACCCCGCCCTCCTCCTCCGTGTCAAAGCGCGTCGCTCTGCAACTC
GTCCCGGCCACTGCGCGTGATGCCGAGCTGGTGAGTGCTGGAAAGCACTA
CCCTTTTCTGGAAATCAAACTGCGTCGTCGCCGCCCCCTATGGGATGTGT
ATGCGCATGTGTACACGAAGTGGGGTTTACCCATCCGTTTACTCACTCTT
GATCACCTCAGCATCCATACCCCTGTGGCTTCCATACTTCCACCAGCTTC
CGAACTAGTGCGTCTGCAGTATCTTGTAACCAACGTTCCCGTGGACTTTT
CAGCGCTTTCGTGTATTCTTCCCTCCGGTCATCAACCAGACCCCCCTATT
AACCAACCATTAACTACCGACAGTGAGGACCACTTCTGGACGCAGAACAC
CGCATCACACCTTCCAATGTTCGACTTTGCTTCCGACTCTCTCTTCAACG
TCTCGTCAACTCCCACCGACTCGTATCCTCCCCGAATTGAACCCTGCGCT
CCTCTCATGAAGAAGCGTCGTGTCATTGCTCCTCTCTCATTACATCCGCA
TCACCATCCCCAGAAGAAGAAGAAGCCGAGTAGACCTCGTACACGTCCTT
CTCCGCCTCAGAACAAATCAATCATTCCACTACCTTCAGCACGTCCTACT
ATACAAAAGAGGCAGAAAACTGGTGAAAAAGCTGTTTTGAATCGACTACG
CTCTCATTTGGAACAACTTTCTTCAAAGGCCTCGGAAGCTGATATGACGT
GCAACGAATGCACACCCGTGCCGGCGTCTAAAGCTAATGTTGATGCTAAC
AAGCCTAACTTTTCGCTTTTCGCTGCCTCTGATTCAGTGTTCGGAACTAG
GCAATCCCCATCTTTACACCGACCTTTCATTTGCAATGGTACCGACATGG
AGCCTAGCAGGTCTGGGGCCGGTCCTGCCCCTCTGCCGGAAGAGTCACTC
GTACCACCACTACCTTCAGCACGTCCTACCGTACAGAAAGTGCAGAGCGC
TGGTGAAAAATCTGTTTTGAACCGACTGCGCTGTCATTTGGAACAGCTTT
CATCCCCCAACTCTTCGGAAGCCGCTGGGACATCAAACGGAGACACACCC
GTGCCGGCGTCTTCCATTGTTGCTGATACTAACAATCCTAACTTTCCATT
CTTGGGTGCATCTGATTCAATTTTCGCAATGGGATTGTCGACGCCTTTGC
AACAACCTACAATCGGTGCCAACGAAGTGGGACATAATGGCGCTACTGAT
GTGCACGACGCCATAGATCTCATTGTGCGCGATGAGTTGGCCGTTGATCT
TAATCACGGTACTCACTTCGACGCTTCGGAAGCAGAACGAGTTACAGTAC
AAGCTGCACCCGATGCATCGCTTAACTTCTCTGCTTTATTTCACGACTTG
TAG

protein sequence of Gcaud3254.t1

>Gcaud3254.t1 ID=Gcaud3254.t1|Name=Gcaud3254.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=551bp
MATSDVEWNRHSLTRLLHVLVLSRGSLTLAAALLPDMSTGVIRNALRRVS
LAHRNPSSWSDSKHIAFVLHRVAGHSVPPASPPPPTPPSSSVSKRVALQL
VPATARDAELVSAGKHYPFLEIKLRRRRPLWDVYAHVYTKWGLPIRLLTL
DHLSIHTPVASILPPASELVRLQYLVTNVPVDFSALSCILPSGHQPDPPI
NQPLTTDSEDHFWTQNTASHLPMFDFASDSLFNVSSTPTDSYPPRIEPCA
PLMKKRRVIAPLSLHPHHHPQKKKKPSRPRTRPSPPQNKSIIPLPSARPT
IQKRQKTGEKAVLNRLRSHLEQLSSKASEADMTCNECTPVPASKANVDAN
KPNFSLFAASDSVFGTRQSPSLHRPFICNGTDMEPSRSGAGPAPLPEESL
VPPLPSARPTVQKVQSAGEKSVLNRLRCHLEQLSSPNSSEAAGTSNGDTP
VPASSIVADTNNPNFPFLGASDSIFAMGLSTPLQQPTIGANEVGHNGATD
VHDAIDLIVRDELAVDLNHGTHFDASEAERVTVQAAPDASLNFSALFHDL
*

mRNA from alignment at NODE_138_length_44555_cov_4.790842:18183..19835-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3254.t1 ID=Gcaud3254.t1|Name=Gcaud3254.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:18183..19835- (Gracilaria caudata M_176_S67 male)
ATGGCAACTTCTGATGTCGAATGGAATCGCCACTCGCTCACACGTCTTCT
TCACGTCCTCGTGCTCTCGCGCGGCTCACTCACGCTGGCCGCCGCGCTGC
TGCCCGACATGTCCACTGGCGTGATTCGCAACGCACTCCGTCGAGTCTCG
CTCGCGCATCGCAACCCCTCGTCTTGGTCCGATTCAAAGCATATTGCCTT
CGTGCTTCATCGTGTCGCCGGCCACAGTGTGCCTCCAGCTTCGCCTCCAC
CGCCGACCCCGCCCTCCTCCTCCGTGTCAAAGCGCGTCGCTCTGCAACTC
GTCCCGGCCACTGCGCGTGATGCCGAGCTGGTGAGTGCTGGAAAGCACTA
CCCTTTTCTGGAAATCAAACTGCGTCGTCGCCGCCCCCTATGGGATGTGT
ATGCGCATGTGTACACGAAGTGGGGTTTACCCATCCGTTTACTCACTCTT
GATCACCTCAGCATCCATACCCCTGTGGCTTCCATACTTCCACCAGCTTC
CGAACTAGTGCGTCTGCAGTATCTTGTAACCAACGTTCCCGTGGACTTTT
CAGCGCTTTCGTGTATTCTTCCCTCCGGTCATCAACCAGACCCCCCTATT
AACCAACCATTAACTACCGACAGTGAGGACCACTTCTGGACGCAGAACAC
CGCATCACACCTTCCAATGTTCGACTTTGCTTCCGACTCTCTCTTCAACG
TCTCGTCAACTCCCACCGACTCGTATCCTCCCCGAATTGAACCCTGCGCT
CCTCTCATGAAGAAGCGTCGTGTCATTGCTCCTCTCTCATTACATCCGCA
TCACCATCCCCAGAAGAAGAAGAAGCCGAGTAGACCTCGTACACGTCCTT
CTCCGCCTCAGAACAAATCAATCATTCCACTACCTTCAGCACGTCCTACT
ATACAAAAGAGGCAGAAAACTGGTGAAAAAGCTGTTTTGAATCGACTACG
CTCTCATTTGGAACAACTTTCTTCAAAGGCCTCGGAAGCTGATATGACGT
GCAACGAATGCACACCCGTGCCGGCGTCTAAAGCTAATGTTGATGCTAAC
AAGCCTAACTTTTCGCTTTTCGCTGCCTCTGATTCAGTGTTCGGAACTAG
GCAATCCCCATCTTTACACCGACCTTTCATTTGCAATGGTACCGACATGG
AGCCTAGCAGGTCTGGGGCCGGTCCTGCCCCTCTGCCGGAAGAGTCACTC
GTACCACCACTACCTTCAGCACGTCCTACCGTACAGAAAGTGCAGAGCGC
TGGTGAAAAATCTGTTTTGAACCGACTGCGCTGTCATTTGGAACAGCTTT
CATCCCCCAACTCTTCGGAAGCCGCTGGGACATCAAACGGAGACACACCC
GTGCCGGCGTCTTCCATTGTTGCTGATACTAACAATCCTAACTTTCCATT
CTTGGGTGCATCTGATTCAATTTTCGCAATGGGATTGTCGACGCCTTTGC
AACAACCTACAATCGGTGCCAACGAAGTGGGACATAATGGCGCTACTGAT
GTGCACGACGCCATAGATCTCATTGTGCGCGATGAGTTGGCCGTTGATCT
TAATCACGGTACTCACTTCGACGCTTCGGAAGCAGAACGAGTTACAGTAC
AAGCTGCACCCGATGCATCGCTTAACTTCTCTGCTTTATTTCACGACTTG
TAG

Coding sequence (CDS) from alignment at NODE_138_length_44555_cov_4.790842:18183..19835-

>Gcaud3254.t1 ID=Gcaud3254.t1|Name=Gcaud3254.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1653bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:18183..19835- (Gracilaria caudata M_176_S67 male)
ATGGCAACTTCTGATGTCGAATGGAATCGCCACTCGCTCACACGTCTTCT
TCACGTCCTCGTGCTCTCGCGCGGCTCACTCACGCTGGCCGCCGCGCTGC
TGCCCGACATGTCCACTGGCGTGATTCGCAACGCACTCCGTCGAGTCTCG
CTCGCGCATCGCAACCCCTCGTCTTGGTCCGATTCAAAGCATATTGCCTT
CGTGCTTCATCGTGTCGCCGGCCACAGTGTGCCTCCAGCTTCGCCTCCAC
CGCCGACCCCGCCCTCCTCCTCCGTGTCAAAGCGCGTCGCTCTGCAACTC
GTCCCGGCCACTGCGCGTGATGCCGAGCTGGTGAGTGCTGGAAAGCACTA
CCCTTTTCTGGAAATCAAACTGCGTCGTCGCCGCCCCCTATGGGATGTGT
ATGCGCATGTGTACACGAAGTGGGGTTTACCCATCCGTTTACTCACTCTT
GATCACCTCAGCATCCATACCCCTGTGGCTTCCATACTTCCACCAGCTTC
CGAACTAGTGCGTCTGCAGTATCTTGTAACCAACGTTCCCGTGGACTTTT
CAGCGCTTTCGTGTATTCTTCCCTCCGGTCATCAACCAGACCCCCCTATT
AACCAACCATTAACTACCGACAGTGAGGACCACTTCTGGACGCAGAACAC
CGCATCACACCTTCCAATGTTCGACTTTGCTTCCGACTCTCTCTTCAACG
TCTCGTCAACTCCCACCGACTCGTATCCTCCCCGAATTGAACCCTGCGCT
CCTCTCATGAAGAAGCGTCGTGTCATTGCTCCTCTCTCATTACATCCGCA
TCACCATCCCCAGAAGAAGAAGAAGCCGAGTAGACCTCGTACACGTCCTT
CTCCGCCTCAGAACAAATCAATCATTCCACTACCTTCAGCACGTCCTACT
ATACAAAAGAGGCAGAAAACTGGTGAAAAAGCTGTTTTGAATCGACTACG
CTCTCATTTGGAACAACTTTCTTCAAAGGCCTCGGAAGCTGATATGACGT
GCAACGAATGCACACCCGTGCCGGCGTCTAAAGCTAATGTTGATGCTAAC
AAGCCTAACTTTTCGCTTTTCGCTGCCTCTGATTCAGTGTTCGGAACTAG
GCAATCCCCATCTTTACACCGACCTTTCATTTGCAATGGTACCGACATGG
AGCCTAGCAGGTCTGGGGCCGGTCCTGCCCCTCTGCCGGAAGAGTCACTC
GTACCACCACTACCTTCAGCACGTCCTACCGTACAGAAAGTGCAGAGCGC
TGGTGAAAAATCTGTTTTGAACCGACTGCGCTGTCATTTGGAACAGCTTT
CATCCCCCAACTCTTCGGAAGCCGCTGGGACATCAAACGGAGACACACCC
GTGCCGGCGTCTTCCATTGTTGCTGATACTAACAATCCTAACTTTCCATT
CTTGGGTGCATCTGATTCAATTTTCGCAATGGGATTGTCGACGCCTTTGC
AACAACCTACAATCGGTGCCAACGAAGTGGGACATAATGGCGCTACTGAT
GTGCACGACGCCATAGATCTCATTGTGCGCGATGAGTTGGCCGTTGATCT
TAATCACGGTACTCACTTCGACGCTTCGGAAGCAGAACGAGTTACAGTAC
AAGCTGCACCCGATGCATCGCTTAACTTCTCTGCTTTATTTCACGACTTG
TAG