Gcaud3252.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3252.t1
Unique Name	Gcaud3252.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	681

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_138_length_44555_cov_4.790842	contig	NODE_138_length_44555_cov_4.790842:9096..11138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1033802.SSPSH_001869
Preferred name	recQ1
PFAMs	DEAD,Helicase_C,RecQ_Zn_bind
Max annot lvl	1236\|Gammaproteobacteria
KEGG ko	ko:K03654
KEGG Pathway	ko03018,map03018
Evalue	4.68e-146
EggNOG OGs	COG0514@1\|root,COG0514@2\|Bacteria,1MVGG@1224\|Proteobacteria,1RS89@1236\|Gammaproteobacteria
EC	3.6.4.12
Description	DNA helicase
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3252	Gcaud3252	Gracilaria caudata M_176_S67 male	gene	NODE_138_length_44555_cov_4.790842 9096..11138 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3252.t1.start1	Gcaud3252.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_138_length_44555_cov_4.790842 9096..9098 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3252.t1.CDS1	Gcaud3252.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_138_length_44555_cov_4.790842 9096..11138 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3252.t1.exon1	Gcaud3252.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_138_length_44555_cov_4.790842 9096..11138 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3252.t1.stop1	Gcaud3252.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_138_length_44555_cov_4.790842 11136..11138 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3252.t1	Gcaud3252.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_138_length_44555_cov_4.790842 9096..11138 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_138_length_44555_cov_4.790842:9096..11138+
coding sequence from alignment at NODE_138_length_44555_cov_4.790842:9096..11138+

mRNA sequence

>Gcaud3252.t1 ID=Gcaud3252.t1|Name=Gcaud3252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp
MRTSPNPTIADAEQLLRKGFGFDSFRNGQREAIELVISTPDAPKPGVPST
KAGRGLAVFPTGAGKSLCYQLPCFLFNDGLTLVVSPLMALMKDQTDALVK
KDFAAACLDSSLSAAETRDVFKRVREGDIRLLFISPERFKNTRFIQLVKK
VQVALFVVDEAHCVSEWGHSFRPDYLRLSRWADRLNCQRRLALTATATPQ
VCEDICASLDIPYPTALVRTPSVRPNLTLRITNVESPRNTSRIEDMIRPR
VEILVSRLMERPQGPTIVYVTLQATATKVAEMLRERGFYQAACYHAGMKQ
EDRKKTQDEFMENKRDAIVVATIAFGMGMDHPSIRYVYHLNLPKSIESYV
QEIGRAGRDGLPSTCEALICIDDVPTLEGFILGETPTKDAVHEIVSELFE
NAKVDGDIEYSTFDLCFDHDIRDTCLGQILAYLDISEGAMEESTPFFSFI
DLRMHPPNQRRWPPQDSPAGRIIAMSTVKKTLITVDVVQVAREMGTEYGQ
ISRFCDDMIEDGYMVEAISRKLRHRARVKKVPEDLKAVADSLYQKLIDTQ
QRQIGRLHEVLKFFSADECQTWLLAKHLGDKVNSSECGHCEFCLNRHAQA
AKIWDQVREREAKKLDKARWALIQLEDLPKDNPLLIARFAAGITSPVISR
RFRRLRTFGSMSDHDFNVLLKAAKRDCKRK*

spliced messenger RNA

>Gcaud3252.t1 ID=Gcaud3252.t1|Name=Gcaud3252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2043bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:9096..11138+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAACTTCTCCCAACCCAACGATAGCTGACGCGGAGCAGTTGCTCCG
GAAGGGGTTTGGTTTTGATTCTTTCCGAAATGGGCAACGGGAGGCCATAG
AACTTGTCATCAGTACACCTGACGCTCCGAAGCCAGGGGTTCCATCAACA
AAAGCAGGGCGAGGCCTGGCCGTTTTCCCGACTGGAGCGGGGAAGTCCCT
ATGTTATCAGCTACCATGCTTTCTGTTTAATGATGGTCTTACATTGGTTG
TCTCTCCTCTTATGGCACTTATGAAAGACCAAACCGATGCATTGGTGAAG
AAAGATTTTGCTGCAGCATGTTTAGATTCAAGTTTGTCAGCAGCTGAGAC
AAGAGATGTATTCAAGCGTGTGCGGGAGGGAGACATCCGACTTCTATTCA
TCAGTCCTGAACGATTTAAGAACACCAGATTCATACAACTTGTAAAAAAG
GTTCAAGTGGCTCTTTTTGTTGTTGACGAGGCACATTGCGTATCTGAATG
GGGTCATTCGTTTAGGCCTGATTACTTGCGCCTCTCGAGATGGGCCGATC
GTCTTAATTGTCAAAGACGCCTTGCACTGACTGCAACTGCAACTCCGCAA
GTATGTGAGGACATTTGCGCCTCGCTTGACATTCCGTATCCGACGGCCTT
AGTGAGAACTCCGTCTGTCAGACCGAATCTGACATTAAGAATCACCAATG
TAGAATCTCCGCGAAATACATCCCGCATCGAAGACATGATTCGACCCAGG
GTTGAGATACTTGTCAGTCGCTTAATGGAGAGGCCCCAAGGACCAACGAT
AGTCTACGTTACTCTACAGGCAACCGCAACAAAGGTTGCAGAAATGCTAA
GAGAGCGAGGCTTCTATCAAGCTGCTTGTTATCATGCTGGGATGAAACAA
GAAGATAGAAAAAAGACCCAGGATGAGTTTATGGAGAACAAGAGGGATGC
AATAGTGGTCGCTACCATCGCATTCGGAATGGGAATGGATCATCCAAGTA
TACGCTATGTTTATCATCTTAATTTGCCTAAATCTATTGAGAGTTATGTG
CAAGAAATTGGAAGAGCTGGGCGTGATGGCTTGCCAAGTACCTGTGAAGC
CTTAATCTGCATTGATGATGTACCGACATTAGAAGGATTCATACTGGGTG
AAACTCCCACCAAAGATGCAGTGCATGAGATTGTCTCTGAGCTCTTTGAG
AACGCAAAAGTAGATGGTGATATTGAGTATTCTACGTTTGACCTGTGCTT
CGACCACGACATTCGAGATACATGCTTGGGTCAGATATTAGCATACCTGG
ATATTTCTGAGGGAGCAATGGAGGAAAGCACGCCATTCTTCTCCTTTATT
GACCTTCGCATGCATCCTCCCAATCAGAGGCGTTGGCCTCCGCAAGACAG
CCCCGCAGGAAGAATCATTGCGATGTCGACAGTCAAAAAAACGCTCATCA
CAGTCGATGTGGTCCAAGTAGCAAGGGAGATGGGTACTGAGTACGGCCAG
ATCTCCAGGTTCTGTGACGATATGATTGAAGACGGGTATATGGTTGAAGC
AATATCTAGAAAATTGAGACATCGTGCGAGAGTGAAGAAGGTACCTGAAG
ATCTTAAGGCCGTGGCAGACAGTTTGTACCAAAAGCTCATCGACACCCAG
CAACGCCAAATCGGTCGCCTCCATGAAGTACTGAAGTTTTTTAGTGCCGA
TGAATGTCAGACATGGCTCCTGGCGAAGCATCTTGGAGATAAGGTCAATT
CTTCAGAATGTGGCCATTGCGAATTCTGCCTTAATCGACATGCACAGGCT
GCCAAAATCTGGGACCAAGTTAGAGAGAGAGAGGCGAAAAAGTTAGACAA
AGCTCGATGGGCTCTCATTCAGCTGGAGGATCTTCCGAAGGATAATCCTT
TGCTCATCGCTCGCTTCGCTGCCGGTATCACTTCACCTGTGATTTCTAGG
CGTTTTCGAAGGCTTAGAACATTTGGGTCCATGTCTGATCATGATTTCAA
TGTTCTTCTCAAGGCAGCCAAGCGAGACTGCAAGCGGAAATAA

protein sequence of Gcaud3252.t1

>Gcaud3252.t1 ID=Gcaud3252.t1|Name=Gcaud3252.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=681bp
MRTSPNPTIADAEQLLRKGFGFDSFRNGQREAIELVISTPDAPKPGVPST
KAGRGLAVFPTGAGKSLCYQLPCFLFNDGLTLVVSPLMALMKDQTDALVK
KDFAAACLDSSLSAAETRDVFKRVREGDIRLLFISPERFKNTRFIQLVKK
VQVALFVVDEAHCVSEWGHSFRPDYLRLSRWADRLNCQRRLALTATATPQ
VCEDICASLDIPYPTALVRTPSVRPNLTLRITNVESPRNTSRIEDMIRPR
VEILVSRLMERPQGPTIVYVTLQATATKVAEMLRERGFYQAACYHAGMKQ
EDRKKTQDEFMENKRDAIVVATIAFGMGMDHPSIRYVYHLNLPKSIESYV
QEIGRAGRDGLPSTCEALICIDDVPTLEGFILGETPTKDAVHEIVSELFE
NAKVDGDIEYSTFDLCFDHDIRDTCLGQILAYLDISEGAMEESTPFFSFI
DLRMHPPNQRRWPPQDSPAGRIIAMSTVKKTLITVDVVQVAREMGTEYGQ
ISRFCDDMIEDGYMVEAISRKLRHRARVKKVPEDLKAVADSLYQKLIDTQ
QRQIGRLHEVLKFFSADECQTWLLAKHLGDKVNSSECGHCEFCLNRHAQA
AKIWDQVREREAKKLDKARWALIQLEDLPKDNPLLIARFAAGITSPVISR
RFRRLRTFGSMSDHDFNVLLKAAKRDCKRK*

mRNA from alignment at NODE_138_length_44555_cov_4.790842:9096..11138+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3252.t1 ID=Gcaud3252.t1|Name=Gcaud3252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2043bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:9096..11138+ (Gracilaria caudata M_176_S67 male)
ATGAGAACTTCTCCCAACCCAACGATAGCTGACGCGGAGCAGTTGCTCCG
GAAGGGGTTTGGTTTTGATTCTTTCCGAAATGGGCAACGGGAGGCCATAG
AACTTGTCATCAGTACACCTGACGCTCCGAAGCCAGGGGTTCCATCAACA
AAAGCAGGGCGAGGCCTGGCCGTTTTCCCGACTGGAGCGGGGAAGTCCCT
ATGTTATCAGCTACCATGCTTTCTGTTTAATGATGGTCTTACATTGGTTG
TCTCTCCTCTTATGGCACTTATGAAAGACCAAACCGATGCATTGGTGAAG
AAAGATTTTGCTGCAGCATGTTTAGATTCAAGTTTGTCAGCAGCTGAGAC
AAGAGATGTATTCAAGCGTGTGCGGGAGGGAGACATCCGACTTCTATTCA
TCAGTCCTGAACGATTTAAGAACACCAGATTCATACAACTTGTAAAAAAG
GTTCAAGTGGCTCTTTTTGTTGTTGACGAGGCACATTGCGTATCTGAATG
GGGTCATTCGTTTAGGCCTGATTACTTGCGCCTCTCGAGATGGGCCGATC
GTCTTAATTGTCAAAGACGCCTTGCACTGACTGCAACTGCAACTCCGCAA
GTATGTGAGGACATTTGCGCCTCGCTTGACATTCCGTATCCGACGGCCTT
AGTGAGAACTCCGTCTGTCAGACCGAATCTGACATTAAGAATCACCAATG
TAGAATCTCCGCGAAATACATCCCGCATCGAAGACATGATTCGACCCAGG
GTTGAGATACTTGTCAGTCGCTTAATGGAGAGGCCCCAAGGACCAACGAT
AGTCTACGTTACTCTACAGGCAACCGCAACAAAGGTTGCAGAAATGCTAA
GAGAGCGAGGCTTCTATCAAGCTGCTTGTTATCATGCTGGGATGAAACAA
GAAGATAGAAAAAAGACCCAGGATGAGTTTATGGAGAACAAGAGGGATGC
AATAGTGGTCGCTACCATCGCATTCGGAATGGGAATGGATCATCCAAGTA
TACGCTATGTTTATCATCTTAATTTGCCTAAATCTATTGAGAGTTATGTG
CAAGAAATTGGAAGAGCTGGGCGTGATGGCTTGCCAAGTACCTGTGAAGC
CTTAATCTGCATTGATGATGTACCGACATTAGAAGGATTCATACTGGGTG
AAACTCCCACCAAAGATGCAGTGCATGAGATTGTCTCTGAGCTCTTTGAG
AACGCAAAAGTAGATGGTGATATTGAGTATTCTACGTTTGACCTGTGCTT
CGACCACGACATTCGAGATACATGCTTGGGTCAGATATTAGCATACCTGG
ATATTTCTGAGGGAGCAATGGAGGAAAGCACGCCATTCTTCTCCTTTATT
GACCTTCGCATGCATCCTCCCAATCAGAGGCGTTGGCCTCCGCAAGACAG
CCCCGCAGGAAGAATCATTGCGATGTCGACAGTCAAAAAAACGCTCATCA
CAGTCGATGTGGTCCAAGTAGCAAGGGAGATGGGTACTGAGTACGGCCAG
ATCTCCAGGTTCTGTGACGATATGATTGAAGACGGGTATATGGTTGAAGC
AATATCTAGAAAATTGAGACATCGTGCGAGAGTGAAGAAGGTACCTGAAG
ATCTTAAGGCCGTGGCAGACAGTTTGTACCAAAAGCTCATCGACACCCAG
CAACGCCAAATCGGTCGCCTCCATGAAGTACTGAAGTTTTTTAGTGCCGA
TGAATGTCAGACATGGCTCCTGGCGAAGCATCTTGGAGATAAGGTCAATT
CTTCAGAATGTGGCCATTGCGAATTCTGCCTTAATCGACATGCACAGGCT
GCCAAAATCTGGGACCAAGTTAGAGAGAGAGAGGCGAAAAAGTTAGACAA
AGCTCGATGGGCTCTCATTCAGCTGGAGGATCTTCCGAAGGATAATCCTT
TGCTCATCGCTCGCTTCGCTGCCGGTATCACTTCACCTGTGATTTCTAGG
CGTTTTCGAAGGCTTAGAACATTTGGGTCCATGTCTGATCATGATTTCAA
TGTTCTTCTCAAGGCAGCCAAGCGAGACTGCAAGCGGAAATAA

Coding sequence (CDS) from alignment at NODE_138_length_44555_cov_4.790842:9096..11138+

>Gcaud3252.t1 ID=Gcaud3252.t1|Name=Gcaud3252.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2043bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:9096..11138+ (Gracilaria caudata M_176_S67 male)
ATGAGAACTTCTCCCAACCCAACGATAGCTGACGCGGAGCAGTTGCTCCG
GAAGGGGTTTGGTTTTGATTCTTTCCGAAATGGGCAACGGGAGGCCATAG
AACTTGTCATCAGTACACCTGACGCTCCGAAGCCAGGGGTTCCATCAACA
AAAGCAGGGCGAGGCCTGGCCGTTTTCCCGACTGGAGCGGGGAAGTCCCT
ATGTTATCAGCTACCATGCTTTCTGTTTAATGATGGTCTTACATTGGTTG
TCTCTCCTCTTATGGCACTTATGAAAGACCAAACCGATGCATTGGTGAAG
AAAGATTTTGCTGCAGCATGTTTAGATTCAAGTTTGTCAGCAGCTGAGAC
AAGAGATGTATTCAAGCGTGTGCGGGAGGGAGACATCCGACTTCTATTCA
TCAGTCCTGAACGATTTAAGAACACCAGATTCATACAACTTGTAAAAAAG
GTTCAAGTGGCTCTTTTTGTTGTTGACGAGGCACATTGCGTATCTGAATG
GGGTCATTCGTTTAGGCCTGATTACTTGCGCCTCTCGAGATGGGCCGATC
GTCTTAATTGTCAAAGACGCCTTGCACTGACTGCAACTGCAACTCCGCAA
GTATGTGAGGACATTTGCGCCTCGCTTGACATTCCGTATCCGACGGCCTT
AGTGAGAACTCCGTCTGTCAGACCGAATCTGACATTAAGAATCACCAATG
TAGAATCTCCGCGAAATACATCCCGCATCGAAGACATGATTCGACCCAGG
GTTGAGATACTTGTCAGTCGCTTAATGGAGAGGCCCCAAGGACCAACGAT
AGTCTACGTTACTCTACAGGCAACCGCAACAAAGGTTGCAGAAATGCTAA
GAGAGCGAGGCTTCTATCAAGCTGCTTGTTATCATGCTGGGATGAAACAA
GAAGATAGAAAAAAGACCCAGGATGAGTTTATGGAGAACAAGAGGGATGC
AATAGTGGTCGCTACCATCGCATTCGGAATGGGAATGGATCATCCAAGTA
TACGCTATGTTTATCATCTTAATTTGCCTAAATCTATTGAGAGTTATGTG
CAAGAAATTGGAAGAGCTGGGCGTGATGGCTTGCCAAGTACCTGTGAAGC
CTTAATCTGCATTGATGATGTACCGACATTAGAAGGATTCATACTGGGTG
AAACTCCCACCAAAGATGCAGTGCATGAGATTGTCTCTGAGCTCTTTGAG
AACGCAAAAGTAGATGGTGATATTGAGTATTCTACGTTTGACCTGTGCTT
CGACCACGACATTCGAGATACATGCTTGGGTCAGATATTAGCATACCTGG
ATATTTCTGAGGGAGCAATGGAGGAAAGCACGCCATTCTTCTCCTTTATT
GACCTTCGCATGCATCCTCCCAATCAGAGGCGTTGGCCTCCGCAAGACAG
CCCCGCAGGAAGAATCATTGCGATGTCGACAGTCAAAAAAACGCTCATCA
CAGTCGATGTGGTCCAAGTAGCAAGGGAGATGGGTACTGAGTACGGCCAG
ATCTCCAGGTTCTGTGACGATATGATTGAAGACGGGTATATGGTTGAAGC
AATATCTAGAAAATTGAGACATCGTGCGAGAGTGAAGAAGGTACCTGAAG
ATCTTAAGGCCGTGGCAGACAGTTTGTACCAAAAGCTCATCGACACCCAG
CAACGCCAAATCGGTCGCCTCCATGAAGTACTGAAGTTTTTTAGTGCCGA
TGAATGTCAGACATGGCTCCTGGCGAAGCATCTTGGAGATAAGGTCAATT
CTTCAGAATGTGGCCATTGCGAATTCTGCCTTAATCGACATGCACAGGCT
GCCAAAATCTGGGACCAAGTTAGAGAGAGAGAGGCGAAAAAGTTAGACAA
AGCTCGATGGGCTCTCATTCAGCTGGAGGATCTTCCGAAGGATAATCCTT
TGCTCATCGCTCGCTTCGCTGCCGGTATCACTTCACCTGTGATTTCTAGG
CGTTTTCGAAGGCTTAGAACATTTGGGTCCATGTCTGATCATGATTTCAA
TGTTCTTCTCAAGGCAGCCAAGCGAGACTGCAAGCGGAAATAA