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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 159749.K0QZZ9 |
| PFAMs | HA |
| Max annot lvl | 2836|Bacillariophyta |
| Evalue | 8.1e-42 |
| EggNOG OGs | 2E1M9@1|root,2S8XU@2759|Eukaryota,2XH87@2836|Bacillariophyta |
| Description | Helicase associated domain |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3248.t1.stop1 | Gcaud3248.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_3411_length_3503_cov_2.317702 1379..1381 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3248.t1.start1 | Gcaud3248.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_3411_length_3503_cov_2.317702 2889..2891 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud3248.t1 ID=Gcaud3248.t1|Name=Gcaud3248.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=192bp
MNSSGGGDSRCSTLHSGSTSATSSLNPTWESRYEELLRWRAEHGDTCVPK
AEGALGRWVARQRELKRTGKLDGSREQALNSINFVWNTVTAMWEERFRKL
SEWKKQHGHCAVPIAQGELGTWVSKQRQLRKRGKLSKEKIDALDSLKFTW
STAEADWEDKFKRLVEWTRTRGHASVPFNEGELGWWEINNT* back to topspliced messenger RNA >Gcaud3248.t1 ID=Gcaud3248.t1|Name=Gcaud3248.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=576bp|location=Sequence derived from alignment at NODE_3411_length_3503_cov_2.317702:1379..2891- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAACTCGAGCGGCGGCGGCGACTCGCGCTGCTCCACGCTGCACAGCGG
CTCGACGTCGGCGACGTCGTCGCTCAACCCCACGTGGGAGTCGCGCTACG
AGGAGCTGCTGCGGTGGCGCGCCGAGCACGGCGACACGTGCGTGCCCAAG
GCGGAGGGCGCGCTCGGCCGCTGGGTGGCGCGCCAGCGCGAGCTCAAACG
AACCGGAAAGCTGGACGGCAGCCGCGAGCAGGCGCTCAACTCCATCAACT
TCGTGTGGAACACGGTGACGGCCATGTGGGAGGAGCGCTTCCGCAAGCTG
AGCGAGTGGAAGAAGCAGCACGGCCACTGCGCCGTGCCCATTGCGCAGGG
CGAGCTGGGCACGTGGGTGTCCAAGCAGCGGCAGCTGCGCAAGCGCGGCA
AGCTGTCCAAGGAGAAGATCGACGCGCTGGACAGCCTCAAGTTCACGTGG
AGCACGGCCGAGGCCGACTGGGAGGACAAGTTCAAGCGGCTGGTGGAGTG
GACGCGCACCAGAGGCCACGCCAGCGTGCCGTTCAACGAGGGCGAGCTCG
GCTGGTGGGAAATTAATAACACGTAA back to topprotein sequence of Gcaud3248.t1 >Gcaud3248.t1 ID=Gcaud3248.t1|Name=Gcaud3248.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=192bp
MNSSGGGDSRCSTLHSGSTSATSSLNPTWESRYEELLRWRAEHGDTCVPK
AEGALGRWVARQRELKRTGKLDGSREQALNSINFVWNTVTAMWEERFRKL
SEWKKQHGHCAVPIAQGELGTWVSKQRQLRKRGKLSKEKIDALDSLKFTW
STAEADWEDKFKRLVEWTRTRGHASVPFNEGELGWWEINNT* back to topmRNA from alignment at NODE_3411_length_3503_cov_2.317702:1379..2891- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud3248.t1 ID=Gcaud3248.t1|Name=Gcaud3248.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1513bp|location=Sequence derived from alignment at NODE_3411_length_3503_cov_2.317702:1379..2891- (Gracilaria caudata M_176_S67 male)
ATGAACTCGAGCGGCGGCGGCGACTCGCGCTGCTCCACGCTGCACAGCGG
CTCGACGTCGGCGACGTCGTCGCTCAACCCCACGTGGGAGTCGCGCTACG
AGGAGCTGCTGCGGTGGCGCGCCGAGCACGGCGACACGTGCGTGCCCAAG
GCGGAGGGCGCGCTCGGCCGCTGGGTGGCGCGCCAGCGCGAGCTCAAACG
AACCGGAAGTACGTCTTTTTTTCTTTTTTTTTTTTTCTCTACACTATCGA
CTTCTAACGCGCGCGCATTGTTGTGTGGTGCTTGAGCAGAGCTGGACGGC
AGCCGCGAGCAGGCGCTCAACTCCATCAACTTCGTGTGGAACACGGTGAC
GGCCATGTGGGAGGAGCGCTTCCGCAAGCTGAGCGAGTGGAAGAAGCAGC
ACGGCCACTGCGCCGTGCCCATTGCGCAGGGCGAGCTGGGCACGTGGGTG
TCCAAGCAGCGGCAGCTGCGCAAGCGCGGCAAGCTGTCCAAGGAGAAGAT
CGACGCGCTGGACAGCCTCAAGTTCACGTGGAGCACGGCCGAGGCCGACT
GGGAGGACAAGTTCAAGCGGCTGGTGGAGTGGACGCGCACCAGAGGCCAC
GCCAGCGTGCCGTTCAACGAGGGCGAGCTCGGCTGGTGGGTGAATACGCA
GCGACAGTGTAAGCGAAAGGGAAAGCTGAGCGCGTCGCGCGAGGCTCGAT
TGCAGTCGCTGGGCTTTGTGTGGAACCCGTCCAACTCGCGGTCGAGGGCG
GCGGCGGCGGCGGCCACCGCGGCGGCGGCGAGCGCGGCGGCGAGCGCGCA
GGGCACGGGTACCGCCACCACCACGGCCACCACCAGCAACACGGTGCTGT
CGGCGTCGGTCGGCAGCTGGTCGGCCGACACCACGCCCAGCTGCACGCCG
GAGAAGGGCGACAAGAACGGCGTGGGCGTGCACGACGCGTGCTCGGCCAT
GACGCTGTTCCCCAACGAGCTGGCGTTCGGCACGCCGTACCTCAAGGAGG
AGATGGATCTGTTCGGCGACAACTGCTCGCCAATATGCACGGACCTGTGG
CTGGCGGACGTGGGCGCGCTGTGCGCGGGCGCGGCGGGCGGCGGCGGCGC
GAGCGACGTGCTGGGCGCGGCGGGCGCGGCGGGCGCGGTGGGCGGCGAGT
CGCTGCTGGCGCCGCCGTGGGGGACGTGCATGCTGGCGCCGCCGCTGTTC
GGCGACGGCGTGGGGACGGGCGGCGGCGTGGGCGTGGGCTTGGGCGGCGG
CGGCGGCGGCGGCGGCGGGGGCGGCGGCGCGGGGCTCAACGTGGGCGCGC
CGCTGCTGGACGCGTCGGCGGCGTTCGGCGTGGGCGCGCTGCTGCCAGGC
ACAGCGGCAGACGAACTGGAGCAACTGCTGTGCAGAGACGACGGCGCGGG
TGGCGCGCTGGAGCACGCAACCATCGACTCGCTAACTTGCCAGCCCCAAC
TGTAATTTTTTGCCATTTTTTTTTCTCTCTCATAACTTTTTCCAGGAAAT
TAATAACACGTAA back to topCoding sequence (CDS) from alignment at NODE_3411_length_3503_cov_2.317702:1379..2891- >Gcaud3248.t1 ID=Gcaud3248.t1|Name=Gcaud3248.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=576bp|location=Sequence derived from alignment at NODE_3411_length_3503_cov_2.317702:1379..2891- (Gracilaria caudata M_176_S67 male)
ATGAACTCGAGCGGCGGCGGCGACTCGCGCTGCTCCACGCTGCACAGCGG
CTCGACGTCGGCGACGTCGTCGCTCAACCCCACGTGGGAGTCGCGCTACG
AGGAGCTGCTGCGGTGGCGCGCCGAGCACGGCGACACGTGCGTGCCCAAG
GCGGAGGGCGCGCTCGGCCGCTGGGTGGCGCGCCAGCGCGAGCTCAAACG
AACCGGAAAGCTGGACGGCAGCCGCGAGCAGGCGCTCAACTCCATCAACT
TCGTGTGGAACACGGTGACGGCCATGTGGGAGGAGCGCTTCCGCAAGCTG
AGCGAGTGGAAGAAGCAGCACGGCCACTGCGCCGTGCCCATTGCGCAGGG
CGAGCTGGGCACGTGGGTGTCCAAGCAGCGGCAGCTGCGCAAGCGCGGCA
AGCTGTCCAAGGAGAAGATCGACGCGCTGGACAGCCTCAAGTTCACGTGG
AGCACGGCCGAGGCCGACTGGGAGGACAAGTTCAAGCGGCTGGTGGAGTG
GACGCGCACCAGAGGCCACGCCAGCGTGCCGTTCAACGAGGGCGAGCTCG
GCTGGTGGGAAATTAATAACACGTAA back to top
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