Gcaud3242.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3242.t1
Unique Name	Gcaud3242.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	303

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_899_length_16324_cov_5.065792	contig	NODE_899_length_16324_cov_5.065792:6071..7107 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3242	Gcaud3242	Gracilaria caudata M_176_S67 male	gene	NODE_899_length_16324_cov_5.065792 6071..7107 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3242.t1	Gcaud3242.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_899_length_16324_cov_5.065792 6071..7107 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3242.t1.start1	Gcaud3242.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_899_length_16324_cov_5.065792 6071..6073 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3242.t1.CDS1	Gcaud3242.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_899_length_16324_cov_5.065792 6071..6513 +
Gcaud3242.t1.CDS2	Gcaud3242.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_899_length_16324_cov_5.065792 6642..7107 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3242.t1.exon1	Gcaud3242.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_899_length_16324_cov_5.065792 6071..6513 +
Gcaud3242.t1.exon2	Gcaud3242.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_899_length_16324_cov_5.065792 6642..7107 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3242.t1.intron1	Gcaud3242.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_899_length_16324_cov_5.065792 6514..6641 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3242.t1.stop1	Gcaud3242.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_899_length_16324_cov_5.065792 7105..7107 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_899_length_16324_cov_5.065792:6071..7107+
coding sequence from alignment at NODE_899_length_16324_cov_5.065792:6071..7107+

mRNA sequence

>Gcaud3242.t1 ID=Gcaud3242.t1|Name=Gcaud3242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=303bp
MHKLHTWDLLPEVETCVRSVNDKDRMLVMNTLKKILKRNMDRPASDSKPH
FTLNEFARLLVLLRDDERCKHQLRSTDENLSRRQLDGSVTRECFWGRIAV
RFNDSSVDSREDFTGYLDEVDSNQRPLCERGAAVLKEHFYKAKTTSLRVG
TADQDIDLLQTATKLISSRVGCRDEGVGSRRKGGDLELKPVVKKRKSADL
QDSFENVSKGIDVFQNMVQQQIEIQKASVSSNLNNNSGSMFAKEENDLVT
EVYKSHERWKQSLTMGDKDLEEIARTTYLRNKKRYQLHCAKNRCEVDLEK
DD*

spliced messenger RNA

>Gcaud3242.t1 ID=Gcaud3242.t1|Name=Gcaud3242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=909bp|location=Sequence derived from alignment at NODE_899_length_16324_cov_5.065792:6071..7107+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcataagttacacacctgggatctgcttccggaagttgagacatgcgt
tcgttcggtgaatgataaagaccgtatgttggttatgaatacgctcaaga
agatattgaagaggaacatggaccgacctgcttcggactcaaagccgcac
ttcactctcaatgagttcgcccgccttcttgttcttttgcgggatgacga
gcgatgtaaacaccaactgcgttctacagacgaaaacctttcgagaaggc
aactggatggaagcgtgacgagagaatgcttctggggaagaattgctgtt
cgattcaatgattcctcagttgattcgagggaggattttacgggatatct
ggacgaagtagactcgaatcagagaccactttgcgagaggggggcagccg
tgctgaaagaacatttttacaaagcaaagacgacttcactgagagttgga
acggccgaccaggatatagacttgttgcaaacagctacgaaactaattag
ttcgagggttggttgccgtgatgagggggttggctcgaggcgcaaaggcg
gggacttggagctgaagcctgtggtgaagaagagaaaaagcgcggatctg
caagatagtttcgagaacgtatcgaagggaatagatgtgtttcagaatat
ggtccagcagcaaatcgaaatccagaaagccagtgtcagttcgaacctca
acaacaacagtggttcaatgtttgccaaggaagagaacgacttggtcaca
gaagtgtataagagtcatgagcggtggaaacagtcattgaccatgggaga
caaagacctcgaggagatagcgcgaacgacgtacctcagaaacaagaagc
gctatcagctccattgtgcgaagaatcgatgcgaagtcgacctggagaag
gatgactaa

protein sequence of Gcaud3242.t1

>Gcaud3242.t1 ID=Gcaud3242.t1|Name=Gcaud3242.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=303bp
MHKLHTWDLLPEVETCVRSVNDKDRMLVMNTLKKILKRNMDRPASDSKPH
FTLNEFARLLVLLRDDERCKHQLRSTDENLSRRQLDGSVTRECFWGRIAV
RFNDSSVDSREDFTGYLDEVDSNQRPLCERGAAVLKEHFYKAKTTSLRVG
TADQDIDLLQTATKLISSRVGCRDEGVGSRRKGGDLELKPVVKKRKSADL
QDSFENVSKGIDVFQNMVQQQIEIQKASVSSNLNNNSGSMFAKEENDLVT
EVYKSHERWKQSLTMGDKDLEEIARTTYLRNKKRYQLHCAKNRCEVDLEK
DD*

mRNA from alignment at NODE_899_length_16324_cov_5.065792:6071..7107+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3242.t1 ID=Gcaud3242.t1|Name=Gcaud3242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1037bp|location=Sequence derived from alignment at NODE_899_length_16324_cov_5.065792:6071..7107+ (Gracilaria caudata M_176_S67 male)
atgcataagttacacacctgggatctgcttccggaagttgagacatgcgt
tcgttcggtgaatgataaagaccgtatgttggttatgaatacgctcaaga
agatattgaagaggaacatggaccgacctgcttcggactcaaagccgcac
ttcactctcaatgagttcgcccgccttcttgttcttttgcgggatgacga
gcgatgtaaacaccaactgcgttctacagacgaaaacctttcgagaaggc
aactggatggaagcgtgacgagagaatgcttctggggaagaattgctgtt
cgattcaatgattcctcagttgattcgagggaggattttacgggatatct
ggacgaagtagactcgaatcagagaccactttgcgagaggggggcagccg
tgctgaaagaacatttttacaaagcaaagacgacttcactgaggtataca
acaagtggtctgcttctgggcagaatgatcccaagcgcactactcatttt
ctagagtattcaccctccgacgatctgaccacgaaatccaagcgaactct
tgttatctttgttgtctgcagagttggaacggccgaccaggatatagact
tgttgcaaacagctacgaaactaattagttcgagggttggttgccgtgat
gagggggttggctcgaggcgcaaaggcggggacttggagctgaagcctgt
ggtgaagaagagaaaaagcgcggatctgcaagatagtttcgagaacgtat
cgaagggaatagatgtgtttcagaatatggtccagcagcaaatcgaaatc
cagaaagccagtgtcagttcgaacctcaacaacaacagtggttcaatgtt
tgccaaggaagagaacgacttggtcacagaagtgtataagagtcatgagc
ggtggaaacagtcattgaccatgggagacaaagacctcgaggagatagcg
cgaacgacgtacctcagaaacaagaagcgctatcagctccattgtgcgaa
gaatcgatgcgaagtcgacctggagaaggatgactaa

Coding sequence (CDS) from alignment at NODE_899_length_16324_cov_5.065792:6071..7107+

>Gcaud3242.t1 ID=Gcaud3242.t1|Name=Gcaud3242.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=909bp|location=Sequence derived from alignment at NODE_899_length_16324_cov_5.065792:6071..7107+ (Gracilaria caudata M_176_S67 male)
atgcataagttacacacctgggatctgcttccggaagttgagacatgcgt
tcgttcggtgaatgataaagaccgtatgttggttatgaatacgctcaaga
agatattgaagaggaacatggaccgacctgcttcggactcaaagccgcac
ttcactctcaatgagttcgcccgccttcttgttcttttgcgggatgacga
gcgatgtaaacaccaactgcgttctacagacgaaaacctttcgagaaggc
aactggatggaagcgtgacgagagaatgcttctggggaagaattgctgtt
cgattcaatgattcctcagttgattcgagggaggattttacgggatatct
ggacgaagtagactcgaatcagagaccactttgcgagaggggggcagccg
tgctgaaagaacatttttacaaagcaaagacgacttcactgagagttgga
acggccgaccaggatatagacttgttgcaaacagctacgaaactaattag
ttcgagggttggttgccgtgatgagggggttggctcgaggcgcaaaggcg
gggacttggagctgaagcctgtggtgaagaagagaaaaagcgcggatctg
caagatagtttcgagaacgtatcgaagggaatagatgtgtttcagaatat
ggtccagcagcaaatcgaaatccagaaagccagtgtcagttcgaacctca
acaacaacagtggttcaatgtttgccaaggaagagaacgacttggtcaca
gaagtgtataagagtcatgagcggtggaaacagtcattgaccatgggaga
caaagacctcgaggagatagcgcgaacgacgtacctcagaaacaagaagc
gctatcagctccattgtgcgaagaatcgatgcgaagtcgacctggagaag
gatgactaa