Gcaud3236.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3236.t1
Unique Name	Gcaud3236.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	421

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_147_length_43555_cov_4.601095	contig	NODE_147_length_43555_cov_4.601095:29109..30371 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3236	Gcaud3236	Gracilaria caudata M_176_S67 male	gene	NODE_147_length_43555_cov_4.601095 29109..30371 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3236.t1.start1	Gcaud3236.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_147_length_43555_cov_4.601095 29109..29111 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3236.t1.CDS1	Gcaud3236.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_147_length_43555_cov_4.601095 29109..30371 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3236.t1.exon1	Gcaud3236.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_147_length_43555_cov_4.601095 29109..30371 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3236.t1.stop1	Gcaud3236.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_147_length_43555_cov_4.601095 30369..30371 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3236.t1	Gcaud3236.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_147_length_43555_cov_4.601095 29109..30371 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_147_length_43555_cov_4.601095:29109..30371+
coding sequence from alignment at NODE_147_length_43555_cov_4.601095:29109..30371+

mRNA sequence

>Gcaud3236.t1 ID=Gcaud3236.t1|Name=Gcaud3236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=421bp
MGFFRRGKSRQVTNEPLPEWDDTRWRSHLRASALGVDYHCNLYVEVINNE
RKEAATHFKDNDEARARSHAESSFRNKRIISALGALAPITNALHQRAEPL
AGYTSIAAIPDPARSDIITIIYAASRLQMSYLTDMVEFLREQFGSYHIEQ
IQQGLGDLFMNVNPTVRDSLSTMTPSREDANAELASAVKEYYGISVNPVP
VHAVTESKTSASSMIPAPPFSASVQSNVPLPPPVRTTKETLRKTHTTPLS
GHSSEMGPTSPELHNSQGAPRHEHNLKTPSPPRPERGRMFAARTETPQHR
REQALQSQHHVETPFTSGIDDVGLPTGRSLFTDEVGEPTNSEKRGLQVRQ
LDTLAGANSSPLSGKGIRDISSQKSRPMHEEEMKKDREVPEHLKSFQDSD
EMLFRRYEQLKEVWELVTVS*

spliced messenger RNA

>Gcaud3236.t1 ID=Gcaud3236.t1|Name=Gcaud3236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_147_length_43555_cov_4.601095:29109..30371+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTCTTTCGTCGCGGGAAATCACGTCAAGTCACGAACGAGCCTCT
TCCCGAATGGGATGACACGCGTTGGCGTTCCCACCTTCGAGCCAGCGCTC
TTGGCGTCGATTATCATTGCAACCTATACGTTGAGGTGATCAATAACGAA
AGAAAGGAAGCAGCGACGCACTTCAAGGACAACGATGAGGCGCGAGCAAG
GAGTCACGCAGAGTCCTCTTTCCGGAACAAACGCATCATTTCTGCACTTG
GAGCATTAGCACCGATTACTAACGCACTTCATCAGAGAGCAGAGCCGCTG
GCTGGCTACACGTCTATTGCAGCAATCCCGGACCCTGCGCGTTCCGATAT
CATTACCATCATCTACGCCGCTAGCCGCCTGCAAATGTCTTACCTTACGG
ATATGGTCGAATTCCTTCGTGAGCAGTTTGGATCGTACCATATTGAACAA
ATTCAGCAAGGCCTCGGTGATCTCTTCATGAATGTGAATCCAACCGTTCG
CGACTCGCTTTCTACCATGACCCCTTCTCGAGAGGATGCAAACGCCGAGT
TAGCCTCGGCAGTGAAGGAATACTATGGTATCTCTGTAAATCCAGTCCCC
GTTCATGCCGTTACGGAAAGCAAAACGTCAGCTTCAAGCATGATCCCAGC
CCCACCCTTTTCAGCCTCGGTACAGAGCAATGTGCCATTGCCGCCGCCCG
TCCGGACGACGAAGGAGACGCTTCGAAAGACCCATACGACACCTTTGTCT
GGTCATTCTTCAGAAATGGGTCCAACGTCGCCCGAACTTCACAACTCACA
GGGTGCACCACGACACGAGCATAACCTCAAAACTCCTTCCCCGCCTCGTC
CGGAACGAGGTAGAATGTTCGCGGCACGCACGGAGACACCACAACATAGG
AGGGAACAGGCGCTTCAAAGTCAGCATCATGTGGAAACGCCGTTTACTTC
CGGTATTGACGATGTTGGATTACCGACGGGACGATCGTTGTTCACAGACG
AGGTAGGGGAACCTACTAACTCGGAAAAGCGGGGTCTACAAGTGCGGCAA
CTGGATACATTGGCGGGAGCAAACAGTTCGCCATTGTCAGGTAAAGGAAT
TCGAGACATTTCCTCGCAAAAGTCTCGACCTATGCATGAGGAGGAAATGA
AGAAAGATCGCGAAGTGCCGGAGCACCTAAAAAGTTTTCAGGATTCGGAT
GAAATGCTGTTCAGGAGGTACGAACAATTGAAAGAGGTATGGGAACTCGT
TACCGTGTCATAG

protein sequence of Gcaud3236.t1

>Gcaud3236.t1 ID=Gcaud3236.t1|Name=Gcaud3236.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=421bp
MGFFRRGKSRQVTNEPLPEWDDTRWRSHLRASALGVDYHCNLYVEVINNE
RKEAATHFKDNDEARARSHAESSFRNKRIISALGALAPITNALHQRAEPL
AGYTSIAAIPDPARSDIITIIYAASRLQMSYLTDMVEFLREQFGSYHIEQ
IQQGLGDLFMNVNPTVRDSLSTMTPSREDANAELASAVKEYYGISVNPVP
VHAVTESKTSASSMIPAPPFSASVQSNVPLPPPVRTTKETLRKTHTTPLS
GHSSEMGPTSPELHNSQGAPRHEHNLKTPSPPRPERGRMFAARTETPQHR
REQALQSQHHVETPFTSGIDDVGLPTGRSLFTDEVGEPTNSEKRGLQVRQ
LDTLAGANSSPLSGKGIRDISSQKSRPMHEEEMKKDREVPEHLKSFQDSD
EMLFRRYEQLKEVWELVTVS*

mRNA from alignment at NODE_147_length_43555_cov_4.601095:29109..30371+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3236.t1 ID=Gcaud3236.t1|Name=Gcaud3236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_147_length_43555_cov_4.601095:29109..30371+ (Gracilaria caudata M_176_S67 male)
ATGGGTTTCTTTCGTCGCGGGAAATCACGTCAAGTCACGAACGAGCCTCT
TCCCGAATGGGATGACACGCGTTGGCGTTCCCACCTTCGAGCCAGCGCTC
TTGGCGTCGATTATCATTGCAACCTATACGTTGAGGTGATCAATAACGAA
AGAAAGGAAGCAGCGACGCACTTCAAGGACAACGATGAGGCGCGAGCAAG
GAGTCACGCAGAGTCCTCTTTCCGGAACAAACGCATCATTTCTGCACTTG
GAGCATTAGCACCGATTACTAACGCACTTCATCAGAGAGCAGAGCCGCTG
GCTGGCTACACGTCTATTGCAGCAATCCCGGACCCTGCGCGTTCCGATAT
CATTACCATCATCTACGCCGCTAGCCGCCTGCAAATGTCTTACCTTACGG
ATATGGTCGAATTCCTTCGTGAGCAGTTTGGATCGTACCATATTGAACAA
ATTCAGCAAGGCCTCGGTGATCTCTTCATGAATGTGAATCCAACCGTTCG
CGACTCGCTTTCTACCATGACCCCTTCTCGAGAGGATGCAAACGCCGAGT
TAGCCTCGGCAGTGAAGGAATACTATGGTATCTCTGTAAATCCAGTCCCC
GTTCATGCCGTTACGGAAAGCAAAACGTCAGCTTCAAGCATGATCCCAGC
CCCACCCTTTTCAGCCTCGGTACAGAGCAATGTGCCATTGCCGCCGCCCG
TCCGGACGACGAAGGAGACGCTTCGAAAGACCCATACGACACCTTTGTCT
GGTCATTCTTCAGAAATGGGTCCAACGTCGCCCGAACTTCACAACTCACA
GGGTGCACCACGACACGAGCATAACCTCAAAACTCCTTCCCCGCCTCGTC
CGGAACGAGGTAGAATGTTCGCGGCACGCACGGAGACACCACAACATAGG
AGGGAACAGGCGCTTCAAAGTCAGCATCATGTGGAAACGCCGTTTACTTC
CGGTATTGACGATGTTGGATTACCGACGGGACGATCGTTGTTCACAGACG
AGGTAGGGGAACCTACTAACTCGGAAAAGCGGGGTCTACAAGTGCGGCAA
CTGGATACATTGGCGGGAGCAAACAGTTCGCCATTGTCAGGTAAAGGAAT
TCGAGACATTTCCTCGCAAAAGTCTCGACCTATGCATGAGGAGGAAATGA
AGAAAGATCGCGAAGTGCCGGAGCACCTAAAAAGTTTTCAGGATTCGGAT
GAAATGCTGTTCAGGAGGTACGAACAATTGAAAGAGGTATGGGAACTCGT
TACCGTGTCATAG

Coding sequence (CDS) from alignment at NODE_147_length_43555_cov_4.601095:29109..30371+

>Gcaud3236.t1 ID=Gcaud3236.t1|Name=Gcaud3236.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1263bp|location=Sequence derived from alignment at NODE_147_length_43555_cov_4.601095:29109..30371+ (Gracilaria caudata M_176_S67 male)
ATGGGTTTCTTTCGTCGCGGGAAATCACGTCAAGTCACGAACGAGCCTCT
TCCCGAATGGGATGACACGCGTTGGCGTTCCCACCTTCGAGCCAGCGCTC
TTGGCGTCGATTATCATTGCAACCTATACGTTGAGGTGATCAATAACGAA
AGAAAGGAAGCAGCGACGCACTTCAAGGACAACGATGAGGCGCGAGCAAG
GAGTCACGCAGAGTCCTCTTTCCGGAACAAACGCATCATTTCTGCACTTG
GAGCATTAGCACCGATTACTAACGCACTTCATCAGAGAGCAGAGCCGCTG
GCTGGCTACACGTCTATTGCAGCAATCCCGGACCCTGCGCGTTCCGATAT
CATTACCATCATCTACGCCGCTAGCCGCCTGCAAATGTCTTACCTTACGG
ATATGGTCGAATTCCTTCGTGAGCAGTTTGGATCGTACCATATTGAACAA
ATTCAGCAAGGCCTCGGTGATCTCTTCATGAATGTGAATCCAACCGTTCG
CGACTCGCTTTCTACCATGACCCCTTCTCGAGAGGATGCAAACGCCGAGT
TAGCCTCGGCAGTGAAGGAATACTATGGTATCTCTGTAAATCCAGTCCCC
GTTCATGCCGTTACGGAAAGCAAAACGTCAGCTTCAAGCATGATCCCAGC
CCCACCCTTTTCAGCCTCGGTACAGAGCAATGTGCCATTGCCGCCGCCCG
TCCGGACGACGAAGGAGACGCTTCGAAAGACCCATACGACACCTTTGTCT
GGTCATTCTTCAGAAATGGGTCCAACGTCGCCCGAACTTCACAACTCACA
GGGTGCACCACGACACGAGCATAACCTCAAAACTCCTTCCCCGCCTCGTC
CGGAACGAGGTAGAATGTTCGCGGCACGCACGGAGACACCACAACATAGG
AGGGAACAGGCGCTTCAAAGTCAGCATCATGTGGAAACGCCGTTTACTTC
CGGTATTGACGATGTTGGATTACCGACGGGACGATCGTTGTTCACAGACG
AGGTAGGGGAACCTACTAACTCGGAAAAGCGGGGTCTACAAGTGCGGCAA
CTGGATACATTGGCGGGAGCAAACAGTTCGCCATTGTCAGGTAAAGGAAT
TCGAGACATTTCCTCGCAAAAGTCTCGACCTATGCATGAGGAGGAAATGA
AGAAAGATCGCGAAGTGCCGGAGCACCTAAAAAGTTTTCAGGATTCGGAT
GAAATGCTGTTCAGGAGGTACGAACAATTGAAAGAGGTATGGGAACTCGT
TACCGTGTCATAG