Gcaud3228.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3228.t1
Unique NameGcaud3228.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_147_length_43555_cov_4.601095contigNODE_147_length_43555_cov_4.601095:12684..13532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA24127
PFAMsPCO_ADO
Max annot lvl2759|Eukaryota
KEGG rclassRC00114,RC00404
KEGG koko:K00030,ko:K10712
KEGG ReactionR00709,R02467
KEGG Pathwayko00020,ko00430,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00430,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010
Evalue5.8e-27
EggNOG OGsKOG4281@1|root,KOG4281@2759|Eukaryota
EC1.1.1.41,1.13.11.19
Descriptioncysteamine dioxygenase activity
COG categoryCE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3228Gcaud3228Gracilaria caudata M_176_S67 malegeneNODE_147_length_43555_cov_4.601095 12684..13532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3228.t1Gcaud3228.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_147_length_43555_cov_4.601095 12684..13532 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3228.t1.start1Gcaud3228.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_147_length_43555_cov_4.601095 12684..12686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3228.t1.CDS1Gcaud3228.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_147_length_43555_cov_4.601095 12684..13370 +
Gcaud3228.t1.CDS2Gcaud3228.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_147_length_43555_cov_4.601095 13467..13532 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3228.t1.exon1Gcaud3228.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_147_length_43555_cov_4.601095 12684..13370 +
Gcaud3228.t1.exon2Gcaud3228.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_147_length_43555_cov_4.601095 13467..13532 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3228.t1.intron1Gcaud3228.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_147_length_43555_cov_4.601095 13371..13466 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3228.t1.stop1Gcaud3228.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_147_length_43555_cov_4.601095 13530..13532 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3228.t1 ID=Gcaud3228.t1|Name=Gcaud3228.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=251bp
MGRLRAFISAIVPRFIRSRHSVPRCSLHHVADVANTVVQKARAASPDKQL
SLTEVQVNQLLKAVTDMNPQDLAIEKQRFIDEATQCEDFDSVVYVPVTEN
ENCTIAIFIIPPGKSIPLHDHPHMYVASRVLWGELKLSAYDIFPADSASL
PDGRIFAKRKEPQIVTADEVEILTPTSNNVHSFAASEWTAVFDVLLPPYD
SQQHRDCTYYEVFPADEDQKHARADVILKEAPCPDSFRTVASEYVGIPIN
*
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spliced messenger RNA

>Gcaud3228.t1 ID=Gcaud3228.t1|Name=Gcaud3228.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=753bp|location=Sequence derived from alignment at NODE_147_length_43555_cov_4.601095:12684..13532+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACGTCTTCGAGCGTTCATCTCCGCTATCGTGCCGCGATTCATTCG
CTCACGCCACTCCGTTCCGCGGTGTTCGCTGCACCATGTGGCGGACGTTG
CTAACACCGTCGTGCAGAAAGCACGTGCCGCCTCGCCAGATAAGCAGCTC
TCGCTCACCGAGGTCCAAGTCAACCAGTTGTTGAAGGCCGTCACCGATAT
GAATCCGCAGGATTTGGCCATTGAGAAGCAACGCTTCATCGACGAAGCAA
CCCAATGTGAGGATTTTGACTCCGTCGTTTATGTGCCCGTCACGGAGAAT
GAGAACTGTACCATCGCCATTTTCATCATTCCGCCGGGAAAAAGCATTCC
GTTGCATGATCATCCACACATGTATGTTGCATCACGTGTGTTGTGGGGTG
AACTTAAACTCAGTGCATACGATATCTTCCCGGCCGACTCGGCTTCGCTT
CCCGATGGTCGCATTTTTGCCAAAAGAAAAGAGCCGCAGATTGTCACTGC
TGATGAGGTTGAAATCCTCACCCCAACCTCCAATAACGTGCACTCTTTTG
CTGCATCCGAGTGGACCGCTGTGTTTGATGTGCTTCTTCCGCCTTACGAC
TCTCAACAGCATAGAGATTGTACCTACTATGAGGTTTTCCCTGCCGATGA
AGATCAAAAACATGCTCGCGCTGATGTCATTTTGAAGGAGGCCCCGTGCC
CTGATTCCTTCCGCACCGTTGCATCAGAATATGTAGGCATCCCAATCAAT
TAG
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protein sequence of Gcaud3228.t1

>Gcaud3228.t1 ID=Gcaud3228.t1|Name=Gcaud3228.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=251bp
MGRLRAFISAIVPRFIRSRHSVPRCSLHHVADVANTVVQKARAASPDKQL
SLTEVQVNQLLKAVTDMNPQDLAIEKQRFIDEATQCEDFDSVVYVPVTEN
ENCTIAIFIIPPGKSIPLHDHPHMYVASRVLWGELKLSAYDIFPADSASL
PDGRIFAKRKEPQIVTADEVEILTPTSNNVHSFAASEWTAVFDVLLPPYD
SQQHRDCTYYEVFPADEDQKHARADVILKEAPCPDSFRTVASEYVGIPIN
*
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mRNA from alignment at NODE_147_length_43555_cov_4.601095:12684..13532+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3228.t1 ID=Gcaud3228.t1|Name=Gcaud3228.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_147_length_43555_cov_4.601095:12684..13532+ (Gracilaria caudata M_176_S67 male)
ATGGGACGTCTTCGAGCGTTCATCTCCGCTATCGTGCCGCGATTCATTCG
CTCACGCCACTCCGTTCCGCGGTGTTCGCTGCACCATGTGGCGGACGTTG
CTAACACCGTCGTGCAGAAAGCACGTGCCGCCTCGCCAGATAAGCAGCTC
TCGCTCACCGAGGTCCAAGTCAACCAGTTGTTGAAGGCCGTCACCGATAT
GAATCCGCAGGATTTGGCCATTGAGAAGCAACGCTTCATCGACGAAGCAA
CCCAATGTGAGGATTTTGACTCCGTCGTTTATGTGCCCGTCACGGAGAAT
GAGAACTGTACCATCGCCATTTTCATCATTCCGCCGGGAAAAAGCATTCC
GTTGCATGATCATCCACACATGTATGTTGCATCACGTGTGTTGTGGGGTG
AACTTAAACTCAGTGCATACGATATCTTCCCGGCCGACTCGGCTTCGCTT
CCCGATGGTCGCATTTTTGCCAAAAGAAAAGAGCCGCAGATTGTCACTGC
TGATGAGGTTGAAATCCTCACCCCAACCTCCAATAACGTGCACTCTTTTG
CTGCATCCGAGTGGACCGCTGTGTTTGATGTGCTTCTTCCGCCTTACGAC
TCTCAACAGCATAGAGATTGTACCTACTATGAGGTTTTCCCTGCCGATGA
AGATCAAAAACATGCTCGCGCTGATGTCATTTTGAAGGTAAGTATGCCAC
CATCGTTTTCTTTACTCTTGATCAAACTCATTAACTAACCTCACTTTTCT
ACCACGTTGCGCCAATACCTTTACAATGTTCAGGAGGCCCCGTGCCCTGA
TTCCTTCCGCACCGTTGCATCAGAATATGTAGGCATCCCAATCAATTAG
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Coding sequence (CDS) from alignment at NODE_147_length_43555_cov_4.601095:12684..13532+

>Gcaud3228.t1 ID=Gcaud3228.t1|Name=Gcaud3228.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=753bp|location=Sequence derived from alignment at NODE_147_length_43555_cov_4.601095:12684..13532+ (Gracilaria caudata M_176_S67 male)
ATGGGACGTCTTCGAGCGTTCATCTCCGCTATCGTGCCGCGATTCATTCG
CTCACGCCACTCCGTTCCGCGGTGTTCGCTGCACCATGTGGCGGACGTTG
CTAACACCGTCGTGCAGAAAGCACGTGCCGCCTCGCCAGATAAGCAGCTC
TCGCTCACCGAGGTCCAAGTCAACCAGTTGTTGAAGGCCGTCACCGATAT
GAATCCGCAGGATTTGGCCATTGAGAAGCAACGCTTCATCGACGAAGCAA
CCCAATGTGAGGATTTTGACTCCGTCGTTTATGTGCCCGTCACGGAGAAT
GAGAACTGTACCATCGCCATTTTCATCATTCCGCCGGGAAAAAGCATTCC
GTTGCATGATCATCCACACATGTATGTTGCATCACGTGTGTTGTGGGGTG
AACTTAAACTCAGTGCATACGATATCTTCCCGGCCGACTCGGCTTCGCTT
CCCGATGGTCGCATTTTTGCCAAAAGAAAAGAGCCGCAGATTGTCACTGC
TGATGAGGTTGAAATCCTCACCCCAACCTCCAATAACGTGCACTCTTTTG
CTGCATCCGAGTGGACCGCTGTGTTTGATGTGCTTCTTCCGCCTTACGAC
TCTCAACAGCATAGAGATTGTACCTACTATGAGGTTTTCCCTGCCGATGA
AGATCAAAAACATGCTCGCGCTGATGTCATTTTGAAGGAGGCCCCGTGCC
CTGATTCCTTCCGCACCGTTGCATCAGAATATGTAGGCATCCCAATCAAT
TAG
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