Gcaud3226.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3226.t1
Unique NameGcaud3226.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_147_length_43555_cov_4.601095contigNODE_147_length_43555_cov_4.601095:8893..9442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29760.VIT_03s0017g01700.t01
PFAMsGCV_H
Max annot lvl35493|Streptophyta
KEGG rclassRC00022,RC02834
KEGG koko:K02437
KEGG ReactionR01221
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200
KEGG ModuleM00532
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue4.33e-27
EggNOG OGsCOG0509@1|root,KOG3373@2759|Eukaryota,37U3Y@33090|Viridiplantae,3GHXS@35493|Streptophyta
DescriptionThe H protein shuttles the methylamine group of glycine from the P protein to the T protein
COG categoryE
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3226Gcaud3226Gracilaria caudata M_176_S67 malegeneNODE_147_length_43555_cov_4.601095 8893..9442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3226.t1Gcaud3226.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_147_length_43555_cov_4.601095 8893..9442 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3226.t1.stop1Gcaud3226.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_147_length_43555_cov_4.601095 8893..8895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3226.t1.CDS1Gcaud3226.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_147_length_43555_cov_4.601095 8893..9026 -
Gcaud3226.t1.CDS2Gcaud3226.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_147_length_43555_cov_4.601095 9123..9272 -
Gcaud3226.t1.CDS3Gcaud3226.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_147_length_43555_cov_4.601095 9349..9442 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3226.t1.exon1Gcaud3226.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_147_length_43555_cov_4.601095 8893..9026 -
Gcaud3226.t1.exon2Gcaud3226.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_147_length_43555_cov_4.601095 9123..9272 -
Gcaud3226.t1.exon3Gcaud3226.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_147_length_43555_cov_4.601095 9349..9442 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3226.t1.intron1Gcaud3226.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_147_length_43555_cov_4.601095 9027..9122 -
Gcaud3226.t1.intron2Gcaud3226.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_147_length_43555_cov_4.601095 9273..9348 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3226.t1.start1Gcaud3226.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_147_length_43555_cov_4.601095 9440..9442 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3226.t1 ID=Gcaud3226.t1|Name=Gcaud3226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=126bp
MAAILRSLPLRRIVQTAPTFARPSLARAFSSYPSDRKYKSSHEWAKLDGD
VATVGITDHAQSTMGDIVFADLPEMGSEAVSEAPDAINKEPYSEGWIFQV
KVSDPSEIDGLMTAEEYEKSIAEEE*
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spliced messenger RNA

>Gcaud3226.t1 ID=Gcaud3226.t1|Name=Gcaud3226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=378bp|location=Sequence derived from alignment at NODE_147_length_43555_cov_4.601095:8893..9442- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCTATCCTCCGCTCTCTTCCTTTGCGTCGCATTGTGCAGACGGC
GCCGACATTTGCTCGTCCGTCATTGGCGCGCGCCTTCTCGTCTTACCCAA
GCGATCGCAAATATAAATCGTCCCATGAATGGGCAAAGCTTGATGGTGAC
GTAGCAACAGTCGGTATCACTGATCATGCACAGAGCACGATGGGCGATAT
TGTCTTCGCTGATTTGCCGGAGATGGGTTCTGAAGCTGTATCAGAAGCGC
CAGACGCCATTAACAAAGAACCCTATAGTGAGGGATGGATCTTTCAGGTT
AAGGTTTCTGACCCTTCCGAGATTGATGGGCTCATGACCGCAGAAGAATA
TGAGAAGAGCATTGCTGAAGAGGAGTAG
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protein sequence of Gcaud3226.t1

>Gcaud3226.t1 ID=Gcaud3226.t1|Name=Gcaud3226.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=126bp
MAAILRSLPLRRIVQTAPTFARPSLARAFSSYPSDRKYKSSHEWAKLDGD
VATVGITDHAQSTMGDIVFADLPEMGSEAVSEAPDAINKEPYSEGWIFQV
KVSDPSEIDGLMTAEEYEKSIAEEE*
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mRNA from alignment at NODE_147_length_43555_cov_4.601095:8893..9442-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3226.t1 ID=Gcaud3226.t1|Name=Gcaud3226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=550bp|location=Sequence derived from alignment at NODE_147_length_43555_cov_4.601095:8893..9442- (Gracilaria caudata M_176_S67 male)
ATGGCAGCTATCCTCCGCTCTCTTCCTTTGCGTCGCATTGTGCAGACGGC
GCCGACATTTGCTCGTCCGTCATTGGCGCGCGCCTTCTCGTCTTGTAAGT
CCAAGATATGCATCTTTTCTGCTTCGGTCCGCCCGCAATCTCCACTAACC
TTCTCCGAACGCCCATGAAGACCCAAGCGATCGCAAATATAAATCGTCCC
ATGAATGGGCAAAGCTTGATGGTGACGTAGCAACAGTCGGTATCACTGAT
CATGCACAGAGCACGATGGGCGATATTGTCTTCGCTGATTTGCCGGAGAT
GGGTTCTGAAGCTGTATCAGGTGAGCGCGCTGCCACCATCGAATCCGTCA
AGGCCGCTGCGGACGTATACTCACCACTGAATGGAGAGATTGTTGGAGTC
AATGAAAATCTGGAAGAAGCGCCAGACGCCATTAACAAAGAACCCTATAG
TGAGGGATGGATCTTTCAGGTTAAGGTTTCTGACCCTTCCGAGATTGATG
GGCTCATGACCGCAGAAGAATATGAGAAGAGCATTGCTGAAGAGGAGTAG
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Coding sequence (CDS) from alignment at NODE_147_length_43555_cov_4.601095:8893..9442-

>Gcaud3226.t1 ID=Gcaud3226.t1|Name=Gcaud3226.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=378bp|location=Sequence derived from alignment at NODE_147_length_43555_cov_4.601095:8893..9442- (Gracilaria caudata M_176_S67 male)
ATGGCAGCTATCCTCCGCTCTCTTCCTTTGCGTCGCATTGTGCAGACGGC
GCCGACATTTGCTCGTCCGTCATTGGCGCGCGCCTTCTCGTCTTACCCAA
GCGATCGCAAATATAAATCGTCCCATGAATGGGCAAAGCTTGATGGTGAC
GTAGCAACAGTCGGTATCACTGATCATGCACAGAGCACGATGGGCGATAT
TGTCTTCGCTGATTTGCCGGAGATGGGTTCTGAAGCTGTATCAGAAGCGC
CAGACGCCATTAACAAAGAACCCTATAGTGAGGGATGGATCTTTCAGGTT
AAGGTTTCTGACCCTTCCGAGATTGATGGGCTCATGACCGCAGAAGAATA
TGAGAAGAGCATTGCTGAAGAGGAGTAG
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