Gcaud3213.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3213.t1
Unique Name	Gcaud3213.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	296

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2385_length_5875_cov_4.431017	contig	NODE_2385_length_5875_cov_4.431017:4542..5429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3213	Gcaud3213	Gracilaria caudata M_176_S67 male	gene	NODE_2385_length_5875_cov_4.431017 4542..5429 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3213.t1.start1	Gcaud3213.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2385_length_5875_cov_4.431017 4542..4544 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3213.t1.CDS1	Gcaud3213.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2385_length_5875_cov_4.431017 4542..5429 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3213.t1.exon1	Gcaud3213.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2385_length_5875_cov_4.431017 4542..5429 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3213.t1.stop1	Gcaud3213.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2385_length_5875_cov_4.431017 5427..5429 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3213.t1	Gcaud3213.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2385_length_5875_cov_4.431017 4542..5429 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2385_length_5875_cov_4.431017:4542..5429+
coding sequence from alignment at NODE_2385_length_5875_cov_4.431017:4542..5429+

mRNA sequence

>Gcaud3213.t1 ID=Gcaud3213.t1|Name=Gcaud3213.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=296bp
MDNESSIECSTACVEPTNTLSIEDPFERGKSTLWDVGSDYLNEDLDFFPF
PSLEHDTRAHNCLIPAKTEFEDPVWPAFEDTDLEVPITIIPNGLQSIPYV
TPVPGTPAAEQTIHESDCENSTDGDESVTVGSNEDVSLELKIKNIQKRFT
VQNALGENTPMRKAFKKEVQKPPTTAGITLEDLKAVFHLERPKAEKRLRL
KRTTFSNLSRYYGISKWPFRTIRDAMNRMNANEKMLQSKALSKDKSRKLQ
EQQRLLSGVIDLIYSDPKESKDTNTLAVLLRIVAARESPGQYPDM*

spliced messenger RNA

>Gcaud3213.t1 ID=Gcaud3213.t1|Name=Gcaud3213.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=888bp|location=Sequence derived from alignment at NODE_2385_length_5875_cov_4.431017:4542..5429+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAATGAATCATCTATCGAATGCAGCACCGCGTGCGTCGAACCTAC
AAATACGTTGTCAATCGAAGATCCCTTCGAGAGGGGTAAGTCAACGCTTT
GGGATGTGGGCAGCGATTACTTGAACGAAGATTTGGACTTTTTCCCCTTT
CCGAGCCTCGAACATGACACAAGAGCGCACAACTGTTTAATTCCGGCGAA
GACCGAATTTGAAGACCCCGTATGGCCAGCATTCGAAGACACAGATCTTG
AAGTTCCAATAACCATAATTCCCAACGGCTTGCAGAGTATCCCGTATGTT
ACCCCAGTTCCTGGTACACCTGCTGCGGAGCAAACTATACATGAAAGTGA
TTGTGAAAACTCTACAGATGGTGATGAAAGTGTCACGGTTGGAAGTAATG
AGGACGTCTCGCTCGAGCTCAAGATAAAGAATATCCAGAAGAGATTCACG
GTTCAGAACGCATTAGGGGAAAACACTCCCATGAGAAAAGCATTCAAGAA
GGAGGTTCAGAAACCGCCAACTACAGCAGGAATCACTCTTGAAGATCTCA
AGGCTGTTTTTCATTTGGAGCGCCCAAAAGCGGAAAAGAGGTTGCGACTG
AAACGCACAACTTTTTCGAATCTCAGCAGATACTATGGAATATCGAAGTG
GCCTTTTCGCACTATCCGAGATGCCATGAATCGCATGAATGCCAATGAAA
AGATGCTTCAGAGCAAAGCACTCTCAAAAGACAAAAGTCGCAAGCTTCAA
GAACAACAACGTCTTTTATCTGGTGTAATTGACCTCATCTACTCTGACCC
AAAAGAAAGCAAGGACACCAACACATTGGCGGTCTTGCTCCGTATCGTCG
CCGCTCGCGAAAGCCCAGGTCAGTATCCTGATATGTAA

protein sequence of Gcaud3213.t1

>Gcaud3213.t1 ID=Gcaud3213.t1|Name=Gcaud3213.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=296bp
MDNESSIECSTACVEPTNTLSIEDPFERGKSTLWDVGSDYLNEDLDFFPF
PSLEHDTRAHNCLIPAKTEFEDPVWPAFEDTDLEVPITIIPNGLQSIPYV
TPVPGTPAAEQTIHESDCENSTDGDESVTVGSNEDVSLELKIKNIQKRFT
VQNALGENTPMRKAFKKEVQKPPTTAGITLEDLKAVFHLERPKAEKRLRL
KRTTFSNLSRYYGISKWPFRTIRDAMNRMNANEKMLQSKALSKDKSRKLQ
EQQRLLSGVIDLIYSDPKESKDTNTLAVLLRIVAARESPGQYPDM*

mRNA from alignment at NODE_2385_length_5875_cov_4.431017:4542..5429+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3213.t1 ID=Gcaud3213.t1|Name=Gcaud3213.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=888bp|location=Sequence derived from alignment at NODE_2385_length_5875_cov_4.431017:4542..5429+ (Gracilaria caudata M_176_S67 male)
ATGGACAATGAATCATCTATCGAATGCAGCACCGCGTGCGTCGAACCTAC
AAATACGTTGTCAATCGAAGATCCCTTCGAGAGGGGTAAGTCAACGCTTT
GGGATGTGGGCAGCGATTACTTGAACGAAGATTTGGACTTTTTCCCCTTT
CCGAGCCTCGAACATGACACAAGAGCGCACAACTGTTTAATTCCGGCGAA
GACCGAATTTGAAGACCCCGTATGGCCAGCATTCGAAGACACAGATCTTG
AAGTTCCAATAACCATAATTCCCAACGGCTTGCAGAGTATCCCGTATGTT
ACCCCAGTTCCTGGTACACCTGCTGCGGAGCAAACTATACATGAAAGTGA
TTGTGAAAACTCTACAGATGGTGATGAAAGTGTCACGGTTGGAAGTAATG
AGGACGTCTCGCTCGAGCTCAAGATAAAGAATATCCAGAAGAGATTCACG
GTTCAGAACGCATTAGGGGAAAACACTCCCATGAGAAAAGCATTCAAGAA
GGAGGTTCAGAAACCGCCAACTACAGCAGGAATCACTCTTGAAGATCTCA
AGGCTGTTTTTCATTTGGAGCGCCCAAAAGCGGAAAAGAGGTTGCGACTG
AAACGCACAACTTTTTCGAATCTCAGCAGATACTATGGAATATCGAAGTG
GCCTTTTCGCACTATCCGAGATGCCATGAATCGCATGAATGCCAATGAAA
AGATGCTTCAGAGCAAAGCACTCTCAAAAGACAAAAGTCGCAAGCTTCAA
GAACAACAACGTCTTTTATCTGGTGTAATTGACCTCATCTACTCTGACCC
AAAAGAAAGCAAGGACACCAACACATTGGCGGTCTTGCTCCGTATCGTCG
CCGCTCGCGAAAGCCCAGGTCAGTATCCTGATATGTAA

Coding sequence (CDS) from alignment at NODE_2385_length_5875_cov_4.431017:4542..5429+

>Gcaud3213.t1 ID=Gcaud3213.t1|Name=Gcaud3213.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=888bp|location=Sequence derived from alignment at NODE_2385_length_5875_cov_4.431017:4542..5429+ (Gracilaria caudata M_176_S67 male)
ATGGACAATGAATCATCTATCGAATGCAGCACCGCGTGCGTCGAACCTAC
AAATACGTTGTCAATCGAAGATCCCTTCGAGAGGGGTAAGTCAACGCTTT
GGGATGTGGGCAGCGATTACTTGAACGAAGATTTGGACTTTTTCCCCTTT
CCGAGCCTCGAACATGACACAAGAGCGCACAACTGTTTAATTCCGGCGAA
GACCGAATTTGAAGACCCCGTATGGCCAGCATTCGAAGACACAGATCTTG
AAGTTCCAATAACCATAATTCCCAACGGCTTGCAGAGTATCCCGTATGTT
ACCCCAGTTCCTGGTACACCTGCTGCGGAGCAAACTATACATGAAAGTGA
TTGTGAAAACTCTACAGATGGTGATGAAAGTGTCACGGTTGGAAGTAATG
AGGACGTCTCGCTCGAGCTCAAGATAAAGAATATCCAGAAGAGATTCACG
GTTCAGAACGCATTAGGGGAAAACACTCCCATGAGAAAAGCATTCAAGAA
GGAGGTTCAGAAACCGCCAACTACAGCAGGAATCACTCTTGAAGATCTCA
AGGCTGTTTTTCATTTGGAGCGCCCAAAAGCGGAAAAGAGGTTGCGACTG
AAACGCACAACTTTTTCGAATCTCAGCAGATACTATGGAATATCGAAGTG
GCCTTTTCGCACTATCCGAGATGCCATGAATCGCATGAATGCCAATGAAA
AGATGCTTCAGAGCAAAGCACTCTCAAAAGACAAAAGTCGCAAGCTTCAA
GAACAACAACGTCTTTTATCTGGTGTAATTGACCTCATCTACTCTGACCC
AAAAGAAAGCAAGGACACCAACACATTGGCGGTCTTGCTCCGTATCGTCG
CCGCTCGCGAAAGCCCAGGTCAGTATCCTGATATGTAA