Gcaud3210.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3210.t1
Unique NameGcaud3210.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length17
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_740_length_18894_cov_4.631920contigNODE_740_length_18894_cov_4.631920:10243..10378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3210Gcaud3210Gracilaria caudata M_176_S67 malegeneNODE_740_length_18894_cov_4.631920 10243..10378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3210.t1Gcaud3210.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_740_length_18894_cov_4.631920 10243..10378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3210.t1.CDS1Gcaud3210.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_740_length_18894_cov_4.631920 10243..10253 +
Gcaud3210.t1.CDS2Gcaud3210.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_740_length_18894_cov_4.631920 10340..10378 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3210.t1.exon1Gcaud3210.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_740_length_18894_cov_4.631920 10243..10253 +
Gcaud3210.t1.exon2Gcaud3210.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_740_length_18894_cov_4.631920 10340..10378 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3210.t1.intron1Gcaud3210.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_740_length_18894_cov_4.631920 10254..10339 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3210.t1.stop1Gcaud3210.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_740_length_18894_cov_4.631920 10376..10378 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3210.t1 ID=Gcaud3210.t1|Name=Gcaud3210.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=17bp
XSGPNLPNSSHSDYNA*
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spliced messenger RNA

>Gcaud3210.t1 ID=Gcaud3210.t1|Name=Gcaud3210.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=50bp|location=Sequence derived from alignment at NODE_740_length_18894_cov_4.631920:10243..10378+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
tatctggacccaacttaccaaattcgagccattccgactacaacgcatga
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protein sequence of Gcaud3210.t1

>Gcaud3210.t1 ID=Gcaud3210.t1|Name=Gcaud3210.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=17bp
XSGPNLPNSSHSDYNA*
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mRNA from alignment at NODE_740_length_18894_cov_4.631920:10243..10378+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3210.t1 ID=Gcaud3210.t1|Name=Gcaud3210.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=136bp|location=Sequence derived from alignment at NODE_740_length_18894_cov_4.631920:10243..10378+ (Gracilaria caudata M_176_S67 male)
tatctggacccgtacgtgaatgcgctatacactctaccatcgttccagat
tgaggaaaagagctaactctatgcgtttcatttgcacctcaacacagaac
ttaccaaattcgagccattccgactacaacgcatga
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Coding sequence (CDS) from alignment at NODE_740_length_18894_cov_4.631920:10243..10378+

>Gcaud3210.t1 ID=Gcaud3210.t1|Name=Gcaud3210.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=50bp|location=Sequence derived from alignment at NODE_740_length_18894_cov_4.631920:10243..10378+ (Gracilaria caudata M_176_S67 male)
tatctggacccaacttaccaaattcgagccattccgactacaacgcatga
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