Gcaud3199.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3199.t1
Unique NameGcaud3199.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6623_length_1123_cov_9.343992contigNODE_6623_length_1123_cov_9.343992:45..1109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3199Gcaud3199Gracilaria caudata M_176_S67 malegeneNODE_6623_length_1123_cov_9.343992 45..1109 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3199.t1.stop1Gcaud3199.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_6623_length_1123_cov_9.343992 45..47 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3199.t1.CDS1Gcaud3199.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6623_length_1123_cov_9.343992 45..1109 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3199.t1.exon1Gcaud3199.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6623_length_1123_cov_9.343992 45..1109 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3199.t1.start1Gcaud3199.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_6623_length_1123_cov_9.343992 1107..1109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3199.t1Gcaud3199.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6623_length_1123_cov_9.343992 45..1109 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3199.t1 ID=Gcaud3199.t1|Name=Gcaud3199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=355bp
MVSRPHTSSGTVVVHNALLREDNVTVCDYLFSNTAWVEFEMPATVKHGNS
LTTLNVNWSSLLGYEMRIAWGPRLRIGNSLHSTYRGDGRVVPGRTGLVCV
GVNEIEHDFCARATERVVCIFFADDKTSTSGTRFAYGEGYMLYKQDALQK
PNNQTSCAGHNLVLDINVVRVFGKIRTENTLWYDEPRLTIFLMTLVTEGF
VGLSEHELLEKKRVQYISRLFLTAAQPTSGVPHEELERRTIQMEGLSQTP
TISILAYVPLALLGSTVFLQIIFILYSRRRISVELKGQKRDERFDTSMQY
LRLDLLRTLLDRGVEAELCDVALRLVRQGEKWRIQLLPDLSSLKRPNTVP
ETVQ*
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spliced messenger RNA

>Gcaud3199.t1 ID=Gcaud3199.t1|Name=Gcaud3199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at NODE_6623_length_1123_cov_9.343992:45..1109- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCCCGCCCACACACAAGCAGTGGAACGGTTGTTGTGCATAATGC
ATTGTTAAGGGAGGACAACGTAACCGTCTGCGATTACTTGTTTTCGAATA
CTGCGTGGGTGGAGTTTGAAATGCCCGCCACTGTTAAGCATGGGAACAGT
TTAACAACATTGAACGTGAACTGGTCTAGCCTGTTGGGGTATGAGATGAG
GATCGCCTGGGGCCCAAGGTTAAGGATAGGAAATTCCTTGCATTCAACTT
ACAGAGGGGACGGGCGGGTAGTGCCCGGCCGTACCGGGCTTGTTTGTGTT
GGAGTGAATGAAATAGAGCATGATTTTTGTGCAAGGGCGACAGAGCGCGT
GGTATGCATCTTTTTTGCAGACGACAAAACGTCTACTTCCGGAACAAGAT
TTGCCTACGGAGAGGGGTACATGCTTTACAAACAGGATGCGCTTCAGAAG
CCCAACAACCAGACCTCTTGTGCCGGCCATAACCTGGTGTTGGATATCAA
TGTAGTAAGAGTGTTTGGGAAGATACGTACAGAAAATACTCTGTGGTACG
ACGAGCCCCGTTTGACAATATTTTTGATGACTTTGGTTACAGAGGGCTTT
GTCGGGCTGTCGGAACATGAACTGTTGGAAAAGAAGCGAGTGCAGTATAT
TTCAAGATTGTTCTTGACCGCTGCACAGCCGACATCCGGTGTGCCGCATG
AGGAGCTGGAGAGACGAACCATACAGATGGAAGGGTTGTCTCAGACGCCA
ACGATATCGATACTCGCTTACGTGCCTTTGGCGTTACTTGGGTCGACGGT
GTTTTTGCAGATCATTTTCATCCTTTATTCTAGGCGGAGAATTTCAGTGG
AGCTCAAGGGCCAAAAGCGCGATGAGAGGTTTGATACAAGCATGCAGTAT
CTAAGGCTTGATCTTCTTCGGACGTTGCTGGACAGAGGGGTGGAAGCCGA
GCTGTGTGATGTGGCTCTGCGGCTGGTCCGTCAGGGTGAAAAGTGGCGAA
TTCAGTTGCTGCCAGACCTGAGTTCGCTCAAGCGACCTAACACAGTTCCG
GAGACTGTACAATAA
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protein sequence of Gcaud3199.t1

>Gcaud3199.t1 ID=Gcaud3199.t1|Name=Gcaud3199.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=355bp
MVSRPHTSSGTVVVHNALLREDNVTVCDYLFSNTAWVEFEMPATVKHGNS
LTTLNVNWSSLLGYEMRIAWGPRLRIGNSLHSTYRGDGRVVPGRTGLVCV
GVNEIEHDFCARATERVVCIFFADDKTSTSGTRFAYGEGYMLYKQDALQK
PNNQTSCAGHNLVLDINVVRVFGKIRTENTLWYDEPRLTIFLMTLVTEGF
VGLSEHELLEKKRVQYISRLFLTAAQPTSGVPHEELERRTIQMEGLSQTP
TISILAYVPLALLGSTVFLQIIFILYSRRRISVELKGQKRDERFDTSMQY
LRLDLLRTLLDRGVEAELCDVALRLVRQGEKWRIQLLPDLSSLKRPNTVP
ETVQ*
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mRNA from alignment at NODE_6623_length_1123_cov_9.343992:45..1109-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3199.t1 ID=Gcaud3199.t1|Name=Gcaud3199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at NODE_6623_length_1123_cov_9.343992:45..1109- (Gracilaria caudata M_176_S67 male)
ATGGTGTCCCGCCCACACACAAGCAGTGGAACGGTTGTTGTGCATAATGC
ATTGTTAAGGGAGGACAACGTAACCGTCTGCGATTACTTGTTTTCGAATA
CTGCGTGGGTGGAGTTTGAAATGCCCGCCACTGTTAAGCATGGGAACAGT
TTAACAACATTGAACGTGAACTGGTCTAGCCTGTTGGGGTATGAGATGAG
GATCGCCTGGGGCCCAAGGTTAAGGATAGGAAATTCCTTGCATTCAACTT
ACAGAGGGGACGGGCGGGTAGTGCCCGGCCGTACCGGGCTTGTTTGTGTT
GGAGTGAATGAAATAGAGCATGATTTTTGTGCAAGGGCGACAGAGCGCGT
GGTATGCATCTTTTTTGCAGACGACAAAACGTCTACTTCCGGAACAAGAT
TTGCCTACGGAGAGGGGTACATGCTTTACAAACAGGATGCGCTTCAGAAG
CCCAACAACCAGACCTCTTGTGCCGGCCATAACCTGGTGTTGGATATCAA
TGTAGTAAGAGTGTTTGGGAAGATACGTACAGAAAATACTCTGTGGTACG
ACGAGCCCCGTTTGACAATATTTTTGATGACTTTGGTTACAGAGGGCTTT
GTCGGGCTGTCGGAACATGAACTGTTGGAAAAGAAGCGAGTGCAGTATAT
TTCAAGATTGTTCTTGACCGCTGCACAGCCGACATCCGGTGTGCCGCATG
AGGAGCTGGAGAGACGAACCATACAGATGGAAGGGTTGTCTCAGACGCCA
ACGATATCGATACTCGCTTACGTGCCTTTGGCGTTACTTGGGTCGACGGT
GTTTTTGCAGATCATTTTCATCCTTTATTCTAGGCGGAGAATTTCAGTGG
AGCTCAAGGGCCAAAAGCGCGATGAGAGGTTTGATACAAGCATGCAGTAT
CTAAGGCTTGATCTTCTTCGGACGTTGCTGGACAGAGGGGTGGAAGCCGA
GCTGTGTGATGTGGCTCTGCGGCTGGTCCGTCAGGGTGAAAAGTGGCGAA
TTCAGTTGCTGCCAGACCTGAGTTCGCTCAAGCGACCTAACACAGTTCCG
GAGACTGTACAATAA
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Coding sequence (CDS) from alignment at NODE_6623_length_1123_cov_9.343992:45..1109-

>Gcaud3199.t1 ID=Gcaud3199.t1|Name=Gcaud3199.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1065bp|location=Sequence derived from alignment at NODE_6623_length_1123_cov_9.343992:45..1109- (Gracilaria caudata M_176_S67 male)
ATGGTGTCCCGCCCACACACAAGCAGTGGAACGGTTGTTGTGCATAATGC
ATTGTTAAGGGAGGACAACGTAACCGTCTGCGATTACTTGTTTTCGAATA
CTGCGTGGGTGGAGTTTGAAATGCCCGCCACTGTTAAGCATGGGAACAGT
TTAACAACATTGAACGTGAACTGGTCTAGCCTGTTGGGGTATGAGATGAG
GATCGCCTGGGGCCCAAGGTTAAGGATAGGAAATTCCTTGCATTCAACTT
ACAGAGGGGACGGGCGGGTAGTGCCCGGCCGTACCGGGCTTGTTTGTGTT
GGAGTGAATGAAATAGAGCATGATTTTTGTGCAAGGGCGACAGAGCGCGT
GGTATGCATCTTTTTTGCAGACGACAAAACGTCTACTTCCGGAACAAGAT
TTGCCTACGGAGAGGGGTACATGCTTTACAAACAGGATGCGCTTCAGAAG
CCCAACAACCAGACCTCTTGTGCCGGCCATAACCTGGTGTTGGATATCAA
TGTAGTAAGAGTGTTTGGGAAGATACGTACAGAAAATACTCTGTGGTACG
ACGAGCCCCGTTTGACAATATTTTTGATGACTTTGGTTACAGAGGGCTTT
GTCGGGCTGTCGGAACATGAACTGTTGGAAAAGAAGCGAGTGCAGTATAT
TTCAAGATTGTTCTTGACCGCTGCACAGCCGACATCCGGTGTGCCGCATG
AGGAGCTGGAGAGACGAACCATACAGATGGAAGGGTTGTCTCAGACGCCA
ACGATATCGATACTCGCTTACGTGCCTTTGGCGTTACTTGGGTCGACGGT
GTTTTTGCAGATCATTTTCATCCTTTATTCTAGGCGGAGAATTTCAGTGG
AGCTCAAGGGCCAAAAGCGCGATGAGAGGTTTGATACAAGCATGCAGTAT
CTAAGGCTTGATCTTCTTCGGACGTTGCTGGACAGAGGGGTGGAAGCCGA
GCTGTGTGATGTGGCTCTGCGGCTGGTCCGTCAGGGTGAAAAGTGGCGAA
TTCAGTTGCTGCCAGACCTGAGTTCGCTCAAGCGACCTAACACAGTTCCG
GAGACTGTACAATAA
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