|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud3193.t1.stop1 | Gcaud3193.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_80_length_55642_cov_4.475869 38640..38642 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud3193.t1.start1 | Gcaud3193.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_80_length_55642_cov_4.475869 41136..41138 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud3193.t1 ID=Gcaud3193.t1|Name=Gcaud3193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=833bp MDVSHRRQQQRAPSFDGLVAGGKPARDPYLTRVVIMVDEATEPGLTDEQA AKHRSAIVSLLLNRDQNMPPSLHNTDPGPAVAYALRKRLKSEDEHAVLST LTLLDELMRVVPYFYRQVANEKFFRRLWRFVVPDYKNGVKSMIPIFGKPK LHAGYRDHSEVANRVKILIRAWAEELSVMFEGRYEPHAGFLIERYNSKRT RIHFPEVPRTGTPWVCPVDLSRLSAYFKETKSRAPTEEAITLAGAENTVE LFANLVENASRFEDLKEEVCQELAQRCMHISNNLTKLSMSMSKEEELTRA IAVSEKLQKALALYKRSLDNGRLERAIPVVDSASLESEEERYDRGGPRPA SSRSLERYNSMPPRSHQYSDSSDYSSSGRRDWGSRERIDMRPKDRPQRTR YDTERASESRRAAPIEEREERPRSREYRRSVTVTPSSKRRGALEENAKDS SAEKRERRELTKARSRREKSDSDLPKIAKEKKKSSSSKKNNLISVQDESS SESSSDEEEANTQAFAMLAERYSTKASQKHRSKPREHKASKSAKQSSSQA SNSTGTPSSSTQSVPPVSNLSVNPAAYYSSMPGMGYNPMMMMANPYAMYG SVAHVPIQDPMGMYKAYQTVNPAMYYNTVSPQLYPSFSPNLPGVPQIPNF QMTGGGPSSATGPTSSAPTPPNQRPMSETSTGMGQLEALNISSEVRNSQN PSPPSGSMPAPPLMNSFYSSVPGMPVMPQPMMPQTGFMPTPPDAATVSNT TGTHSVPDGQAEAYRNAMNQAAVAYHTAAAMYRSVQGEAPVVPQQMHATK PVSIGDAMIPPKNASVPSNTVPEATKREETEE* back to topspliced messenger RNA >Gcaud3193.t1 ID=Gcaud3193.t1|Name=Gcaud3193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2499bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:38640..41138- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGATGTCTCACATCGTCGCCAACAACAGCGTGCTCCCTCTTTTGACGG CCTTGTGGCCGGTGGGAAGCCAGCTCGCGACCCATACCTGACCCGCGTGG TAATTATGGTCGACGAGGCGACCGAGCCTGGATTGACCGACGAGCAGGCG GCGAAGCATCGGTCGGCCATAGTTAGTTTGCTGCTCAACAGAGATCAGAA TATGCCGCCCTCGCTGCACAATACGGACCCTGGTCCAGCTGTCGCCTATG CGTTGCGGAAGCGCCTAAAAAGTGAGGATGAGCATGCCGTGCTTAGCACT CTGACTTTGTTGGATGAACTCATGCGCGTCGTCCCCTACTTTTATCGTCA GGTTGCAAATGAGAAGTTCTTTAGACGCTTATGGCGCTTTGTCGTGCCAG ACTACAAGAACGGCGTCAAGTCGATGATTCCAATATTCGGAAAGCCCAAG CTGCATGCAGGTTACCGTGATCACTCAGAGGTAGCAAATAGAGTCAAGAT TCTAATTAGGGCCTGGGCGGAAGAACTCTCTGTAATGTTTGAAGGTCGTT ATGAACCACACGCTGGTTTTCTCATCGAGCGGTACAACTCCAAGCGCACT CGCATCCACTTCCCAGAAGTCCCCAGAACTGGAACCCCATGGGTCTGCCC CGTAGATCTTTCGAGGCTAAGCGCGTATTTCAAGGAAACCAAGAGTCGTG CGCCAACTGAAGAAGCCATAACTCTTGCCGGTGCTGAAAATACGGTCGAA CTGTTTGCCAATTTAGTTGAAAACGCTAGTCGTTTTGAAGATTTGAAGGA AGAAGTCTGTCAAGAATTAGCACAACGTTGCATGCATATATCCAACAATC TAACGAAGCTAAGCATGAGCATGAGCAAAGAAGAAGAATTGACACGGGCG ATCGCCGTCAGTGAAAAGCTTCAGAAGGCACTCGCCCTGTACAAGCGAAG TCTTGATAATGGCAGACTTGAACGGGCCATTCCTGTCGTTGATTCTGCCA GTCTGGAAAGCGAGGAAGAAAGGTACGACCGCGGAGGCCCGCGACCTGCA TCGTCAAGGAGCCTGGAGAGATACAACAGCATGCCTCCCCGATCGCATCA GTATAGTGATTCTTCGGACTACTCAAGTTCTGGAAGACGAGACTGGGGTA GTCGCGAAAGAATAGACATGCGCCCAAAAGATCGACCCCAGCGAACCAGA TATGATACGGAGAGAGCTTCGGAGAGTAGACGGGCCGCTCCGATTGAAGA GCGTGAGGAGCGACCGCGCTCCAGGGAATACAGACGGAGCGTCACTGTTA CCCCAAGTTCCAAGCGAAGGGGAGCTCTCGAAGAAAATGCAAAAGACTCG TCTGCGGAAAAACGGGAAAGGCGCGAATTGACGAAGGCAAGAAGTCGCCG GGAGAAGAGCGACAGTGATCTACCGAAGATAGCGAAGGAGAAGAAGAAAT CGAGCTCCTCTAAGAAGAATAATCTTATCTCCGTGCAGGATGAATCATCT TCTGAGTCTTCCTCGGACGAGGAAGAAGCAAATACTCAGGCGTTTGCAAT GCTTGCAGAAAGATACTCAACAAAAGCTTCTCAAAAGCACAGAAGCAAAC CAAGAGAGCACAAGGCTTCGAAGTCAGCAAAGCAATCATCATCTCAGGCT AGCAACTCTACAGGTACTCCGAGCTCCAGCACACAGAGCGTGCCACCAGT TTCCAACTTGTCTGTGAACCCAGCGGCGTATTATTCTTCTATGCCTGGAA TGGGATATAATCCGATGATGATGATGGCCAACCCGTATGCGATGTATGGT TCTGTGGCGCATGTTCCGATTCAGGACCCAATGGGGATGTACAAAGCTTA CCAAACTGTCAATCCGGCAATGTACTACAACACAGTCAGTCCCCAACTGT ACCCCTCGTTTTCGCCGAACCTTCCCGGAGTACCCCAGATACCAAACTTT CAGATGACGGGCGGTGGACCTTCATCGGCGACTGGTCCGACGAGTTCTGC ACCAACCCCACCCAATCAGAGACCAATGTCCGAGACCAGCACGGGAATGG GACAGTTAGAGGCTTTGAATATCTCAAGTGAAGTACGCAATTCTCAAAAC CCGTCGCCCCCCAGTGGTTCAATGCCTGCTCCGCCGTTGATGAATTCATT TTATTCAAGCGTGCCGGGAATGCCTGTGATGCCCCAACCTATGATGCCAC AAACTGGATTTATGCCAACCCCACCAGATGCTGCAACCGTTTCAAATACA ACTGGTACCCACTCTGTCCCGGACGGACAGGCAGAAGCGTACAGGAATGC TATGAACCAAGCTGCTGTTGCATATCATACTGCCGCTGCCATGTATCGGA GCGTGCAAGGAGAGGCTCCTGTCGTCCCGCAACAGATGCACGCGACTAAA CCAGTATCGATTGGTGATGCAATGATACCTCCGAAAAATGCGTCTGTTCC CTCTAATACCGTACCTGAAGCAACGAAACGAGAAGAAACTGAAGAGTAG back to topprotein sequence of Gcaud3193.t1 >Gcaud3193.t1 ID=Gcaud3193.t1|Name=Gcaud3193.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=833bp
MDVSHRRQQQRAPSFDGLVAGGKPARDPYLTRVVIMVDEATEPGLTDEQA AKHRSAIVSLLLNRDQNMPPSLHNTDPGPAVAYALRKRLKSEDEHAVLST LTLLDELMRVVPYFYRQVANEKFFRRLWRFVVPDYKNGVKSMIPIFGKPK LHAGYRDHSEVANRVKILIRAWAEELSVMFEGRYEPHAGFLIERYNSKRT RIHFPEVPRTGTPWVCPVDLSRLSAYFKETKSRAPTEEAITLAGAENTVE LFANLVENASRFEDLKEEVCQELAQRCMHISNNLTKLSMSMSKEEELTRA IAVSEKLQKALALYKRSLDNGRLERAIPVVDSASLESEEERYDRGGPRPA SSRSLERYNSMPPRSHQYSDSSDYSSSGRRDWGSRERIDMRPKDRPQRTR YDTERASESRRAAPIEEREERPRSREYRRSVTVTPSSKRRGALEENAKDS SAEKRERRELTKARSRREKSDSDLPKIAKEKKKSSSSKKNNLISVQDESS SESSSDEEEANTQAFAMLAERYSTKASQKHRSKPREHKASKSAKQSSSQA SNSTGTPSSSTQSVPPVSNLSVNPAAYYSSMPGMGYNPMMMMANPYAMYG SVAHVPIQDPMGMYKAYQTVNPAMYYNTVSPQLYPSFSPNLPGVPQIPNF QMTGGGPSSATGPTSSAPTPPNQRPMSETSTGMGQLEALNISSEVRNSQN PSPPSGSMPAPPLMNSFYSSVPGMPVMPQPMMPQTGFMPTPPDAATVSNT TGTHSVPDGQAEAYRNAMNQAAVAYHTAAAMYRSVQGEAPVVPQQMHATK PVSIGDAMIPPKNASVPSNTVPEATKREETEE* back to topmRNA from alignment at NODE_80_length_55642_cov_4.475869:38640..41138- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud3193.t1 ID=Gcaud3193.t1|Name=Gcaud3193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2499bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:38640..41138- (Gracilaria caudata M_176_S67 male) ATGGATGTCTCACATCGTCGCCAACAACAGCGTGCTCCCTCTTTTGACGG
CCTTGTGGCCGGTGGGAAGCCAGCTCGCGACCCATACCTGACCCGCGTGG
TAATTATGGTCGACGAGGCGACCGAGCCTGGATTGACCGACGAGCAGGCG
GCGAAGCATCGGTCGGCCATAGTTAGTTTGCTGCTCAACAGAGATCAGAA
TATGCCGCCCTCGCTGCACAATACGGACCCTGGTCCAGCTGTCGCCTATG
CGTTGCGGAAGCGCCTAAAAAGTGAGGATGAGCATGCCGTGCTTAGCACT
CTGACTTTGTTGGATGAACTCATGCGCGTCGTCCCCTACTTTTATCGTCA
GGTTGCAAATGAGAAGTTCTTTAGACGCTTATGGCGCTTTGTCGTGCCAG
ACTACAAGAACGGCGTCAAGTCGATGATTCCAATATTCGGAAAGCCCAAG
CTGCATGCAGGTTACCGTGATCACTCAGAGGTAGCAAATAGAGTCAAGAT
TCTAATTAGGGCCTGGGCGGAAGAACTCTCTGTAATGTTTGAAGGTCGTT
ATGAACCACACGCTGGTTTTCTCATCGAGCGGTACAACTCCAAGCGCACT
CGCATCCACTTCCCAGAAGTCCCCAGAACTGGAACCCCATGGGTCTGCCC
CGTAGATCTTTCGAGGCTAAGCGCGTATTTCAAGGAAACCAAGAGTCGTG
CGCCAACTGAAGAAGCCATAACTCTTGCCGGTGCTGAAAATACGGTCGAA
CTGTTTGCCAATTTAGTTGAAAACGCTAGTCGTTTTGAAGATTTGAAGGA
AGAAGTCTGTCAAGAATTAGCACAACGTTGCATGCATATATCCAACAATC
TAACGAAGCTAAGCATGAGCATGAGCAAAGAAGAAGAATTGACACGGGCG
ATCGCCGTCAGTGAAAAGCTTCAGAAGGCACTCGCCCTGTACAAGCGAAG
TCTTGATAATGGCAGACTTGAACGGGCCATTCCTGTCGTTGATTCTGCCA
GTCTGGAAAGCGAGGAAGAAAGGTACGACCGCGGAGGCCCGCGACCTGCA
TCGTCAAGGAGCCTGGAGAGATACAACAGCATGCCTCCCCGATCGCATCA
GTATAGTGATTCTTCGGACTACTCAAGTTCTGGAAGACGAGACTGGGGTA
GTCGCGAAAGAATAGACATGCGCCCAAAAGATCGACCCCAGCGAACCAGA
TATGATACGGAGAGAGCTTCGGAGAGTAGACGGGCCGCTCCGATTGAAGA
GCGTGAGGAGCGACCGCGCTCCAGGGAATACAGACGGAGCGTCACTGTTA
CCCCAAGTTCCAAGCGAAGGGGAGCTCTCGAAGAAAATGCAAAAGACTCG
TCTGCGGAAAAACGGGAAAGGCGCGAATTGACGAAGGCAAGAAGTCGCCG
GGAGAAGAGCGACAGTGATCTACCGAAGATAGCGAAGGAGAAGAAGAAAT
CGAGCTCCTCTAAGAAGAATAATCTTATCTCCGTGCAGGATGAATCATCT
TCTGAGTCTTCCTCGGACGAGGAAGAAGCAAATACTCAGGCGTTTGCAAT
GCTTGCAGAAAGATACTCAACAAAAGCTTCTCAAAAGCACAGAAGCAAAC
CAAGAGAGCACAAGGCTTCGAAGTCAGCAAAGCAATCATCATCTCAGGCT
AGCAACTCTACAGGTACTCCGAGCTCCAGCACACAGAGCGTGCCACCAGT
TTCCAACTTGTCTGTGAACCCAGCGGCGTATTATTCTTCTATGCCTGGAA
TGGGATATAATCCGATGATGATGATGGCCAACCCGTATGCGATGTATGGT
TCTGTGGCGCATGTTCCGATTCAGGACCCAATGGGGATGTACAAAGCTTA
CCAAACTGTCAATCCGGCAATGTACTACAACACAGTCAGTCCCCAACTGT
ACCCCTCGTTTTCGCCGAACCTTCCCGGAGTACCCCAGATACCAAACTTT
CAGATGACGGGCGGTGGACCTTCATCGGCGACTGGTCCGACGAGTTCTGC
ACCAACCCCACCCAATCAGAGACCAATGTCCGAGACCAGCACGGGAATGG
GACAGTTAGAGGCTTTGAATATCTCAAGTGAAGTACGCAATTCTCAAAAC
CCGTCGCCCCCCAGTGGTTCAATGCCTGCTCCGCCGTTGATGAATTCATT
TTATTCAAGCGTGCCGGGAATGCCTGTGATGCCCCAACCTATGATGCCAC
AAACTGGATTTATGCCAACCCCACCAGATGCTGCAACCGTTTCAAATACA
ACTGGTACCCACTCTGTCCCGGACGGACAGGCAGAAGCGTACAGGAATGC
TATGAACCAAGCTGCTGTTGCATATCATACTGCCGCTGCCATGTATCGGA
GCGTGCAAGGAGAGGCTCCTGTCGTCCCGCAACAGATGCACGCGACTAAA
CCAGTATCGATTGGTGATGCAATGATACCTCCGAAAAATGCGTCTGTTCC
CTCTAATACCGTACCTGAAGCAACGAAACGAGAAGAAACTGAAGAGTAG back to topCoding sequence (CDS) from alignment at NODE_80_length_55642_cov_4.475869:38640..41138- >Gcaud3193.t1 ID=Gcaud3193.t1|Name=Gcaud3193.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2499bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:38640..41138- (Gracilaria caudata M_176_S67 male) ATGGATGTCTCACATCGTCGCCAACAACAGCGTGCTCCCTCTTTTGACGG CCTTGTGGCCGGTGGGAAGCCAGCTCGCGACCCATACCTGACCCGCGTGG TAATTATGGTCGACGAGGCGACCGAGCCTGGATTGACCGACGAGCAGGCG GCGAAGCATCGGTCGGCCATAGTTAGTTTGCTGCTCAACAGAGATCAGAA TATGCCGCCCTCGCTGCACAATACGGACCCTGGTCCAGCTGTCGCCTATG CGTTGCGGAAGCGCCTAAAAAGTGAGGATGAGCATGCCGTGCTTAGCACT CTGACTTTGTTGGATGAACTCATGCGCGTCGTCCCCTACTTTTATCGTCA GGTTGCAAATGAGAAGTTCTTTAGACGCTTATGGCGCTTTGTCGTGCCAG ACTACAAGAACGGCGTCAAGTCGATGATTCCAATATTCGGAAAGCCCAAG CTGCATGCAGGTTACCGTGATCACTCAGAGGTAGCAAATAGAGTCAAGAT TCTAATTAGGGCCTGGGCGGAAGAACTCTCTGTAATGTTTGAAGGTCGTT ATGAACCACACGCTGGTTTTCTCATCGAGCGGTACAACTCCAAGCGCACT CGCATCCACTTCCCAGAAGTCCCCAGAACTGGAACCCCATGGGTCTGCCC CGTAGATCTTTCGAGGCTAAGCGCGTATTTCAAGGAAACCAAGAGTCGTG CGCCAACTGAAGAAGCCATAACTCTTGCCGGTGCTGAAAATACGGTCGAA CTGTTTGCCAATTTAGTTGAAAACGCTAGTCGTTTTGAAGATTTGAAGGA AGAAGTCTGTCAAGAATTAGCACAACGTTGCATGCATATATCCAACAATC TAACGAAGCTAAGCATGAGCATGAGCAAAGAAGAAGAATTGACACGGGCG ATCGCCGTCAGTGAAAAGCTTCAGAAGGCACTCGCCCTGTACAAGCGAAG TCTTGATAATGGCAGACTTGAACGGGCCATTCCTGTCGTTGATTCTGCCA GTCTGGAAAGCGAGGAAGAAAGGTACGACCGCGGAGGCCCGCGACCTGCA TCGTCAAGGAGCCTGGAGAGATACAACAGCATGCCTCCCCGATCGCATCA GTATAGTGATTCTTCGGACTACTCAAGTTCTGGAAGACGAGACTGGGGTA GTCGCGAAAGAATAGACATGCGCCCAAAAGATCGACCCCAGCGAACCAGA TATGATACGGAGAGAGCTTCGGAGAGTAGACGGGCCGCTCCGATTGAAGA GCGTGAGGAGCGACCGCGCTCCAGGGAATACAGACGGAGCGTCACTGTTA CCCCAAGTTCCAAGCGAAGGGGAGCTCTCGAAGAAAATGCAAAAGACTCG TCTGCGGAAAAACGGGAAAGGCGCGAATTGACGAAGGCAAGAAGTCGCCG GGAGAAGAGCGACAGTGATCTACCGAAGATAGCGAAGGAGAAGAAGAAAT CGAGCTCCTCTAAGAAGAATAATCTTATCTCCGTGCAGGATGAATCATCT TCTGAGTCTTCCTCGGACGAGGAAGAAGCAAATACTCAGGCGTTTGCAAT GCTTGCAGAAAGATACTCAACAAAAGCTTCTCAAAAGCACAGAAGCAAAC CAAGAGAGCACAAGGCTTCGAAGTCAGCAAAGCAATCATCATCTCAGGCT AGCAACTCTACAGGTACTCCGAGCTCCAGCACACAGAGCGTGCCACCAGT TTCCAACTTGTCTGTGAACCCAGCGGCGTATTATTCTTCTATGCCTGGAA TGGGATATAATCCGATGATGATGATGGCCAACCCGTATGCGATGTATGGT TCTGTGGCGCATGTTCCGATTCAGGACCCAATGGGGATGTACAAAGCTTA CCAAACTGTCAATCCGGCAATGTACTACAACACAGTCAGTCCCCAACTGT ACCCCTCGTTTTCGCCGAACCTTCCCGGAGTACCCCAGATACCAAACTTT CAGATGACGGGCGGTGGACCTTCATCGGCGACTGGTCCGACGAGTTCTGC ACCAACCCCACCCAATCAGAGACCAATGTCCGAGACCAGCACGGGAATGG GACAGTTAGAGGCTTTGAATATCTCAAGTGAAGTACGCAATTCTCAAAAC CCGTCGCCCCCCAGTGGTTCAATGCCTGCTCCGCCGTTGATGAATTCATT TTATTCAAGCGTGCCGGGAATGCCTGTGATGCCCCAACCTATGATGCCAC AAACTGGATTTATGCCAACCCCACCAGATGCTGCAACCGTTTCAAATACA ACTGGTACCCACTCTGTCCCGGACGGACAGGCAGAAGCGTACAGGAATGC TATGAACCAAGCTGCTGTTGCATATCATACTGCCGCTGCCATGTATCGGA GCGTGCAAGGAGAGGCTCCTGTCGTCCCGCAACAGATGCACGCGACTAAA CCAGTATCGATTGGTGATGCAATGATACCTCCGAAAAATGCGTCTGTTCC CTCTAATACCGTACCTGAAGCAACGAAACGAGAAGAAACTGAAGAGTAG back to top
|