Gcaud3193.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3193.t1
Unique NameGcaud3193.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length833
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_80_length_55642_cov_4.475869contigNODE_80_length_55642_cov_4.475869:38640..41138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3193Gcaud3193Gracilaria caudata M_176_S67 malegeneNODE_80_length_55642_cov_4.475869 38640..41138 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3193.t1.stop1Gcaud3193.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_80_length_55642_cov_4.475869 38640..38642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3193.t1.CDS1Gcaud3193.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_80_length_55642_cov_4.475869 38640..41138 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3193.t1.exon1Gcaud3193.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_80_length_55642_cov_4.475869 38640..41138 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3193.t1.start1Gcaud3193.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_80_length_55642_cov_4.475869 41136..41138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3193.t1Gcaud3193.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_80_length_55642_cov_4.475869 38640..41138 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3193.t1 ID=Gcaud3193.t1|Name=Gcaud3193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=833bp
MDVSHRRQQQRAPSFDGLVAGGKPARDPYLTRVVIMVDEATEPGLTDEQA
AKHRSAIVSLLLNRDQNMPPSLHNTDPGPAVAYALRKRLKSEDEHAVLST
LTLLDELMRVVPYFYRQVANEKFFRRLWRFVVPDYKNGVKSMIPIFGKPK
LHAGYRDHSEVANRVKILIRAWAEELSVMFEGRYEPHAGFLIERYNSKRT
RIHFPEVPRTGTPWVCPVDLSRLSAYFKETKSRAPTEEAITLAGAENTVE
LFANLVENASRFEDLKEEVCQELAQRCMHISNNLTKLSMSMSKEEELTRA
IAVSEKLQKALALYKRSLDNGRLERAIPVVDSASLESEEERYDRGGPRPA
SSRSLERYNSMPPRSHQYSDSSDYSSSGRRDWGSRERIDMRPKDRPQRTR
YDTERASESRRAAPIEEREERPRSREYRRSVTVTPSSKRRGALEENAKDS
SAEKRERRELTKARSRREKSDSDLPKIAKEKKKSSSSKKNNLISVQDESS
SESSSDEEEANTQAFAMLAERYSTKASQKHRSKPREHKASKSAKQSSSQA
SNSTGTPSSSTQSVPPVSNLSVNPAAYYSSMPGMGYNPMMMMANPYAMYG
SVAHVPIQDPMGMYKAYQTVNPAMYYNTVSPQLYPSFSPNLPGVPQIPNF
QMTGGGPSSATGPTSSAPTPPNQRPMSETSTGMGQLEALNISSEVRNSQN
PSPPSGSMPAPPLMNSFYSSVPGMPVMPQPMMPQTGFMPTPPDAATVSNT
TGTHSVPDGQAEAYRNAMNQAAVAYHTAAAMYRSVQGEAPVVPQQMHATK
PVSIGDAMIPPKNASVPSNTVPEATKREETEE*
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spliced messenger RNA

>Gcaud3193.t1 ID=Gcaud3193.t1|Name=Gcaud3193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2499bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:38640..41138- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTCTCACATCGTCGCCAACAACAGCGTGCTCCCTCTTTTGACGG
CCTTGTGGCCGGTGGGAAGCCAGCTCGCGACCCATACCTGACCCGCGTGG
TAATTATGGTCGACGAGGCGACCGAGCCTGGATTGACCGACGAGCAGGCG
GCGAAGCATCGGTCGGCCATAGTTAGTTTGCTGCTCAACAGAGATCAGAA
TATGCCGCCCTCGCTGCACAATACGGACCCTGGTCCAGCTGTCGCCTATG
CGTTGCGGAAGCGCCTAAAAAGTGAGGATGAGCATGCCGTGCTTAGCACT
CTGACTTTGTTGGATGAACTCATGCGCGTCGTCCCCTACTTTTATCGTCA
GGTTGCAAATGAGAAGTTCTTTAGACGCTTATGGCGCTTTGTCGTGCCAG
ACTACAAGAACGGCGTCAAGTCGATGATTCCAATATTCGGAAAGCCCAAG
CTGCATGCAGGTTACCGTGATCACTCAGAGGTAGCAAATAGAGTCAAGAT
TCTAATTAGGGCCTGGGCGGAAGAACTCTCTGTAATGTTTGAAGGTCGTT
ATGAACCACACGCTGGTTTTCTCATCGAGCGGTACAACTCCAAGCGCACT
CGCATCCACTTCCCAGAAGTCCCCAGAACTGGAACCCCATGGGTCTGCCC
CGTAGATCTTTCGAGGCTAAGCGCGTATTTCAAGGAAACCAAGAGTCGTG
CGCCAACTGAAGAAGCCATAACTCTTGCCGGTGCTGAAAATACGGTCGAA
CTGTTTGCCAATTTAGTTGAAAACGCTAGTCGTTTTGAAGATTTGAAGGA
AGAAGTCTGTCAAGAATTAGCACAACGTTGCATGCATATATCCAACAATC
TAACGAAGCTAAGCATGAGCATGAGCAAAGAAGAAGAATTGACACGGGCG
ATCGCCGTCAGTGAAAAGCTTCAGAAGGCACTCGCCCTGTACAAGCGAAG
TCTTGATAATGGCAGACTTGAACGGGCCATTCCTGTCGTTGATTCTGCCA
GTCTGGAAAGCGAGGAAGAAAGGTACGACCGCGGAGGCCCGCGACCTGCA
TCGTCAAGGAGCCTGGAGAGATACAACAGCATGCCTCCCCGATCGCATCA
GTATAGTGATTCTTCGGACTACTCAAGTTCTGGAAGACGAGACTGGGGTA
GTCGCGAAAGAATAGACATGCGCCCAAAAGATCGACCCCAGCGAACCAGA
TATGATACGGAGAGAGCTTCGGAGAGTAGACGGGCCGCTCCGATTGAAGA
GCGTGAGGAGCGACCGCGCTCCAGGGAATACAGACGGAGCGTCACTGTTA
CCCCAAGTTCCAAGCGAAGGGGAGCTCTCGAAGAAAATGCAAAAGACTCG
TCTGCGGAAAAACGGGAAAGGCGCGAATTGACGAAGGCAAGAAGTCGCCG
GGAGAAGAGCGACAGTGATCTACCGAAGATAGCGAAGGAGAAGAAGAAAT
CGAGCTCCTCTAAGAAGAATAATCTTATCTCCGTGCAGGATGAATCATCT
TCTGAGTCTTCCTCGGACGAGGAAGAAGCAAATACTCAGGCGTTTGCAAT
GCTTGCAGAAAGATACTCAACAAAAGCTTCTCAAAAGCACAGAAGCAAAC
CAAGAGAGCACAAGGCTTCGAAGTCAGCAAAGCAATCATCATCTCAGGCT
AGCAACTCTACAGGTACTCCGAGCTCCAGCACACAGAGCGTGCCACCAGT
TTCCAACTTGTCTGTGAACCCAGCGGCGTATTATTCTTCTATGCCTGGAA
TGGGATATAATCCGATGATGATGATGGCCAACCCGTATGCGATGTATGGT
TCTGTGGCGCATGTTCCGATTCAGGACCCAATGGGGATGTACAAAGCTTA
CCAAACTGTCAATCCGGCAATGTACTACAACACAGTCAGTCCCCAACTGT
ACCCCTCGTTTTCGCCGAACCTTCCCGGAGTACCCCAGATACCAAACTTT
CAGATGACGGGCGGTGGACCTTCATCGGCGACTGGTCCGACGAGTTCTGC
ACCAACCCCACCCAATCAGAGACCAATGTCCGAGACCAGCACGGGAATGG
GACAGTTAGAGGCTTTGAATATCTCAAGTGAAGTACGCAATTCTCAAAAC
CCGTCGCCCCCCAGTGGTTCAATGCCTGCTCCGCCGTTGATGAATTCATT
TTATTCAAGCGTGCCGGGAATGCCTGTGATGCCCCAACCTATGATGCCAC
AAACTGGATTTATGCCAACCCCACCAGATGCTGCAACCGTTTCAAATACA
ACTGGTACCCACTCTGTCCCGGACGGACAGGCAGAAGCGTACAGGAATGC
TATGAACCAAGCTGCTGTTGCATATCATACTGCCGCTGCCATGTATCGGA
GCGTGCAAGGAGAGGCTCCTGTCGTCCCGCAACAGATGCACGCGACTAAA
CCAGTATCGATTGGTGATGCAATGATACCTCCGAAAAATGCGTCTGTTCC
CTCTAATACCGTACCTGAAGCAACGAAACGAGAAGAAACTGAAGAGTAG
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protein sequence of Gcaud3193.t1

>Gcaud3193.t1 ID=Gcaud3193.t1|Name=Gcaud3193.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=833bp
MDVSHRRQQQRAPSFDGLVAGGKPARDPYLTRVVIMVDEATEPGLTDEQA
AKHRSAIVSLLLNRDQNMPPSLHNTDPGPAVAYALRKRLKSEDEHAVLST
LTLLDELMRVVPYFYRQVANEKFFRRLWRFVVPDYKNGVKSMIPIFGKPK
LHAGYRDHSEVANRVKILIRAWAEELSVMFEGRYEPHAGFLIERYNSKRT
RIHFPEVPRTGTPWVCPVDLSRLSAYFKETKSRAPTEEAITLAGAENTVE
LFANLVENASRFEDLKEEVCQELAQRCMHISNNLTKLSMSMSKEEELTRA
IAVSEKLQKALALYKRSLDNGRLERAIPVVDSASLESEEERYDRGGPRPA
SSRSLERYNSMPPRSHQYSDSSDYSSSGRRDWGSRERIDMRPKDRPQRTR
YDTERASESRRAAPIEEREERPRSREYRRSVTVTPSSKRRGALEENAKDS
SAEKRERRELTKARSRREKSDSDLPKIAKEKKKSSSSKKNNLISVQDESS
SESSSDEEEANTQAFAMLAERYSTKASQKHRSKPREHKASKSAKQSSSQA
SNSTGTPSSSTQSVPPVSNLSVNPAAYYSSMPGMGYNPMMMMANPYAMYG
SVAHVPIQDPMGMYKAYQTVNPAMYYNTVSPQLYPSFSPNLPGVPQIPNF
QMTGGGPSSATGPTSSAPTPPNQRPMSETSTGMGQLEALNISSEVRNSQN
PSPPSGSMPAPPLMNSFYSSVPGMPVMPQPMMPQTGFMPTPPDAATVSNT
TGTHSVPDGQAEAYRNAMNQAAVAYHTAAAMYRSVQGEAPVVPQQMHATK
PVSIGDAMIPPKNASVPSNTVPEATKREETEE*
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mRNA from alignment at NODE_80_length_55642_cov_4.475869:38640..41138-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3193.t1 ID=Gcaud3193.t1|Name=Gcaud3193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2499bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:38640..41138- (Gracilaria caudata M_176_S67 male)
ATGGATGTCTCACATCGTCGCCAACAACAGCGTGCTCCCTCTTTTGACGG CCTTGTGGCCGGTGGGAAGCCAGCTCGCGACCCATACCTGACCCGCGTGG TAATTATGGTCGACGAGGCGACCGAGCCTGGATTGACCGACGAGCAGGCG GCGAAGCATCGGTCGGCCATAGTTAGTTTGCTGCTCAACAGAGATCAGAA TATGCCGCCCTCGCTGCACAATACGGACCCTGGTCCAGCTGTCGCCTATG CGTTGCGGAAGCGCCTAAAAAGTGAGGATGAGCATGCCGTGCTTAGCACT CTGACTTTGTTGGATGAACTCATGCGCGTCGTCCCCTACTTTTATCGTCA GGTTGCAAATGAGAAGTTCTTTAGACGCTTATGGCGCTTTGTCGTGCCAG ACTACAAGAACGGCGTCAAGTCGATGATTCCAATATTCGGAAAGCCCAAG CTGCATGCAGGTTACCGTGATCACTCAGAGGTAGCAAATAGAGTCAAGAT TCTAATTAGGGCCTGGGCGGAAGAACTCTCTGTAATGTTTGAAGGTCGTT ATGAACCACACGCTGGTTTTCTCATCGAGCGGTACAACTCCAAGCGCACT CGCATCCACTTCCCAGAAGTCCCCAGAACTGGAACCCCATGGGTCTGCCC CGTAGATCTTTCGAGGCTAAGCGCGTATTTCAAGGAAACCAAGAGTCGTG CGCCAACTGAAGAAGCCATAACTCTTGCCGGTGCTGAAAATACGGTCGAA CTGTTTGCCAATTTAGTTGAAAACGCTAGTCGTTTTGAAGATTTGAAGGA AGAAGTCTGTCAAGAATTAGCACAACGTTGCATGCATATATCCAACAATC TAACGAAGCTAAGCATGAGCATGAGCAAAGAAGAAGAATTGACACGGGCG ATCGCCGTCAGTGAAAAGCTTCAGAAGGCACTCGCCCTGTACAAGCGAAG TCTTGATAATGGCAGACTTGAACGGGCCATTCCTGTCGTTGATTCTGCCA GTCTGGAAAGCGAGGAAGAAAGGTACGACCGCGGAGGCCCGCGACCTGCA TCGTCAAGGAGCCTGGAGAGATACAACAGCATGCCTCCCCGATCGCATCA GTATAGTGATTCTTCGGACTACTCAAGTTCTGGAAGACGAGACTGGGGTA GTCGCGAAAGAATAGACATGCGCCCAAAAGATCGACCCCAGCGAACCAGA TATGATACGGAGAGAGCTTCGGAGAGTAGACGGGCCGCTCCGATTGAAGA GCGTGAGGAGCGACCGCGCTCCAGGGAATACAGACGGAGCGTCACTGTTA CCCCAAGTTCCAAGCGAAGGGGAGCTCTCGAAGAAAATGCAAAAGACTCG TCTGCGGAAAAACGGGAAAGGCGCGAATTGACGAAGGCAAGAAGTCGCCG GGAGAAGAGCGACAGTGATCTACCGAAGATAGCGAAGGAGAAGAAGAAAT CGAGCTCCTCTAAGAAGAATAATCTTATCTCCGTGCAGGATGAATCATCT TCTGAGTCTTCCTCGGACGAGGAAGAAGCAAATACTCAGGCGTTTGCAAT GCTTGCAGAAAGATACTCAACAAAAGCTTCTCAAAAGCACAGAAGCAAAC CAAGAGAGCACAAGGCTTCGAAGTCAGCAAAGCAATCATCATCTCAGGCT AGCAACTCTACAGGTACTCCGAGCTCCAGCACACAGAGCGTGCCACCAGT TTCCAACTTGTCTGTGAACCCAGCGGCGTATTATTCTTCTATGCCTGGAA TGGGATATAATCCGATGATGATGATGGCCAACCCGTATGCGATGTATGGT TCTGTGGCGCATGTTCCGATTCAGGACCCAATGGGGATGTACAAAGCTTA CCAAACTGTCAATCCGGCAATGTACTACAACACAGTCAGTCCCCAACTGT ACCCCTCGTTTTCGCCGAACCTTCCCGGAGTACCCCAGATACCAAACTTT CAGATGACGGGCGGTGGACCTTCATCGGCGACTGGTCCGACGAGTTCTGC ACCAACCCCACCCAATCAGAGACCAATGTCCGAGACCAGCACGGGAATGG GACAGTTAGAGGCTTTGAATATCTCAAGTGAAGTACGCAATTCTCAAAAC CCGTCGCCCCCCAGTGGTTCAATGCCTGCTCCGCCGTTGATGAATTCATT TTATTCAAGCGTGCCGGGAATGCCTGTGATGCCCCAACCTATGATGCCAC AAACTGGATTTATGCCAACCCCACCAGATGCTGCAACCGTTTCAAATACA ACTGGTACCCACTCTGTCCCGGACGGACAGGCAGAAGCGTACAGGAATGC TATGAACCAAGCTGCTGTTGCATATCATACTGCCGCTGCCATGTATCGGA GCGTGCAAGGAGAGGCTCCTGTCGTCCCGCAACAGATGCACGCGACTAAA CCAGTATCGATTGGTGATGCAATGATACCTCCGAAAAATGCGTCTGTTCC CTCTAATACCGTACCTGAAGCAACGAAACGAGAAGAAACTGAAGAGTAG
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Coding sequence (CDS) from alignment at NODE_80_length_55642_cov_4.475869:38640..41138-

>Gcaud3193.t1 ID=Gcaud3193.t1|Name=Gcaud3193.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2499bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:38640..41138- (Gracilaria caudata M_176_S67 male)
ATGGATGTCTCACATCGTCGCCAACAACAGCGTGCTCCCTCTTTTGACGG
CCTTGTGGCCGGTGGGAAGCCAGCTCGCGACCCATACCTGACCCGCGTGG
TAATTATGGTCGACGAGGCGACCGAGCCTGGATTGACCGACGAGCAGGCG
GCGAAGCATCGGTCGGCCATAGTTAGTTTGCTGCTCAACAGAGATCAGAA
TATGCCGCCCTCGCTGCACAATACGGACCCTGGTCCAGCTGTCGCCTATG
CGTTGCGGAAGCGCCTAAAAAGTGAGGATGAGCATGCCGTGCTTAGCACT
CTGACTTTGTTGGATGAACTCATGCGCGTCGTCCCCTACTTTTATCGTCA
GGTTGCAAATGAGAAGTTCTTTAGACGCTTATGGCGCTTTGTCGTGCCAG
ACTACAAGAACGGCGTCAAGTCGATGATTCCAATATTCGGAAAGCCCAAG
CTGCATGCAGGTTACCGTGATCACTCAGAGGTAGCAAATAGAGTCAAGAT
TCTAATTAGGGCCTGGGCGGAAGAACTCTCTGTAATGTTTGAAGGTCGTT
ATGAACCACACGCTGGTTTTCTCATCGAGCGGTACAACTCCAAGCGCACT
CGCATCCACTTCCCAGAAGTCCCCAGAACTGGAACCCCATGGGTCTGCCC
CGTAGATCTTTCGAGGCTAAGCGCGTATTTCAAGGAAACCAAGAGTCGTG
CGCCAACTGAAGAAGCCATAACTCTTGCCGGTGCTGAAAATACGGTCGAA
CTGTTTGCCAATTTAGTTGAAAACGCTAGTCGTTTTGAAGATTTGAAGGA
AGAAGTCTGTCAAGAATTAGCACAACGTTGCATGCATATATCCAACAATC
TAACGAAGCTAAGCATGAGCATGAGCAAAGAAGAAGAATTGACACGGGCG
ATCGCCGTCAGTGAAAAGCTTCAGAAGGCACTCGCCCTGTACAAGCGAAG
TCTTGATAATGGCAGACTTGAACGGGCCATTCCTGTCGTTGATTCTGCCA
GTCTGGAAAGCGAGGAAGAAAGGTACGACCGCGGAGGCCCGCGACCTGCA
TCGTCAAGGAGCCTGGAGAGATACAACAGCATGCCTCCCCGATCGCATCA
GTATAGTGATTCTTCGGACTACTCAAGTTCTGGAAGACGAGACTGGGGTA
GTCGCGAAAGAATAGACATGCGCCCAAAAGATCGACCCCAGCGAACCAGA
TATGATACGGAGAGAGCTTCGGAGAGTAGACGGGCCGCTCCGATTGAAGA
GCGTGAGGAGCGACCGCGCTCCAGGGAATACAGACGGAGCGTCACTGTTA
CCCCAAGTTCCAAGCGAAGGGGAGCTCTCGAAGAAAATGCAAAAGACTCG
TCTGCGGAAAAACGGGAAAGGCGCGAATTGACGAAGGCAAGAAGTCGCCG
GGAGAAGAGCGACAGTGATCTACCGAAGATAGCGAAGGAGAAGAAGAAAT
CGAGCTCCTCTAAGAAGAATAATCTTATCTCCGTGCAGGATGAATCATCT
TCTGAGTCTTCCTCGGACGAGGAAGAAGCAAATACTCAGGCGTTTGCAAT
GCTTGCAGAAAGATACTCAACAAAAGCTTCTCAAAAGCACAGAAGCAAAC
CAAGAGAGCACAAGGCTTCGAAGTCAGCAAAGCAATCATCATCTCAGGCT
AGCAACTCTACAGGTACTCCGAGCTCCAGCACACAGAGCGTGCCACCAGT
TTCCAACTTGTCTGTGAACCCAGCGGCGTATTATTCTTCTATGCCTGGAA
TGGGATATAATCCGATGATGATGATGGCCAACCCGTATGCGATGTATGGT
TCTGTGGCGCATGTTCCGATTCAGGACCCAATGGGGATGTACAAAGCTTA
CCAAACTGTCAATCCGGCAATGTACTACAACACAGTCAGTCCCCAACTGT
ACCCCTCGTTTTCGCCGAACCTTCCCGGAGTACCCCAGATACCAAACTTT
CAGATGACGGGCGGTGGACCTTCATCGGCGACTGGTCCGACGAGTTCTGC
ACCAACCCCACCCAATCAGAGACCAATGTCCGAGACCAGCACGGGAATGG
GACAGTTAGAGGCTTTGAATATCTCAAGTGAAGTACGCAATTCTCAAAAC
CCGTCGCCCCCCAGTGGTTCAATGCCTGCTCCGCCGTTGATGAATTCATT
TTATTCAAGCGTGCCGGGAATGCCTGTGATGCCCCAACCTATGATGCCAC
AAACTGGATTTATGCCAACCCCACCAGATGCTGCAACCGTTTCAAATACA
ACTGGTACCCACTCTGTCCCGGACGGACAGGCAGAAGCGTACAGGAATGC
TATGAACCAAGCTGCTGTTGCATATCATACTGCCGCTGCCATGTATCGGA
GCGTGCAAGGAGAGGCTCCTGTCGTCCCGCAACAGATGCACGCGACTAAA
CCAGTATCGATTGGTGATGCAATGATACCTCCGAAAAATGCGTCTGTTCC
CTCTAATACCGTACCTGAAGCAACGAAACGAGAAGAAACTGAAGAGTAG
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