Gcaud3190.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3190.t1
Unique Name	Gcaud3190.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	444

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_80_length_55642_cov_4.475869	contig	NODE_80_length_55642_cov_4.475869:32153..33484 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7994.ENSAMXP00000001338
Preferred name	OAT
PFAMs	Aminotran_3
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00006,RC00062
KEGG ko	ko:K00819
KEGG Reaction	R00667
KEGG Pathway	ko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130
GOs	GO:0003008,GO:0003674,GO:0003824,GO:0003992,GO:0004587,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006591,GO:0006807,GO:0007600,GO:0007601,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0022607,GO:0030170,GO:0031974,GO:0031981,GO:0032501,GO:0034214,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0050877,GO:0050953,GO:0051259,GO:0065003,GO:0070013,GO:0070279,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605
Evalue	2.52e-184
EggNOG OGs	COG4992@1\|root,KOG1402@2759\|Eukaryota,38EEM@33154\|Opisthokonta,3BC6G@33208\|Metazoa,3CVEK@33213\|Bilateria,489RC@7711\|Chordata,48XYA@7742\|Vertebrata,49TZ6@7898\|Actinopterygii
EC	2.6.1.13
Description	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
COG category	E
BRITE	ko00000,ko00001,ko01000,ko01007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3190	Gcaud3190	Gracilaria caudata M_176_S67 male	gene	NODE_80_length_55642_cov_4.475869 32153..33484 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3190.t1.start1	Gcaud3190.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_80_length_55642_cov_4.475869 32153..32155 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3190.t1.CDS1	Gcaud3190.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_80_length_55642_cov_4.475869 32153..33484 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3190.t1.exon1	Gcaud3190.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_80_length_55642_cov_4.475869 32153..33484 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3190.t1.stop1	Gcaud3190.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_80_length_55642_cov_4.475869 33482..33484 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3190.t1	Gcaud3190.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_80_length_55642_cov_4.475869 32153..33484 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_80_length_55642_cov_4.475869:32153..33484+
coding sequence from alignment at NODE_80_length_55642_cov_4.475869:32153..33484+

mRNA sequence

>Gcaud3190.t1 ID=Gcaud3190.t1|Name=Gcaud3190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=444bp
MIRPQHFTAVSSRAFPVIRRSHMAEASQAAIDLEHKHGASNYHPLPVVLS
RAQGCRAWDVEGRQYLDFLAAYSAVNQGHCHPRIVTALAKQAARLTLTSR
AFHNDLLGEFQKRLCETFGYERCLPMNTGVEGGETAVKLARRWGYDCKHI
APDRARVVFARGNFWGRTIAAISSSTDPTSREGFGPFVPGYDLVDYDNLE
QLERAVSKPDVCAFMVEPIQGEAGVVIPKPGYLKAAKKLCEKHNVLLIAD
EVQTGLGRTGRMLASEHEDVKPDLVVLGKALSGGVYPVSAVLGSDKVLGL
LRPGEHGSTYGGNPLACAVAIEALSVLEDERLCENALKMGEVLRTALTKR
GLPKKLVREVRGVGLMNAIEIEDVLGEERTAWEVCVEMARNGVLAKPTHG
HIIRLTPPLVINEGEVEQACVVIRDAVRTVGEMAANEGKSQAA*

spliced messenger RNA

>Gcaud3190.t1 ID=Gcaud3190.t1|Name=Gcaud3190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:32153..33484+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCGCCCTCAGCATTTCACGGCCGTTTCTTCTCGGGCCTTTCCGGT
GATCCGTCGCTCGCACATGGCAGAAGCCTCGCAAGCCGCCATCGATCTGG
AACACAAGCACGGTGCTAGCAACTACCACCCTCTTCCGGTCGTTCTCTCT
CGTGCTCAAGGCTGCCGCGCCTGGGATGTTGAAGGCCGCCAGTATTTGGA
TTTTCTCGCCGCTTACTCAGCAGTCAACCAAGGACATTGCCATCCACGCA
TTGTAACGGCACTCGCAAAACAGGCAGCTCGTCTGACCCTCACTTCGCGT
GCATTTCACAATGATCTGCTAGGGGAATTCCAGAAGCGCCTGTGCGAAAC
CTTTGGATATGAGCGATGTTTACCCATGAATACCGGTGTGGAAGGAGGTG
AAACCGCTGTGAAACTTGCTAGAAGGTGGGGATATGACTGCAAGCATATT
GCCCCTGATCGTGCCCGGGTGGTGTTTGCCAGGGGAAATTTCTGGGGTAG
AACTATTGCTGCCATCTCATCCAGCACTGATCCTACTTCAAGGGAAGGCT
TTGGACCTTTTGTACCAGGCTATGACCTCGTTGATTACGACAATCTGGAA
CAGCTTGAACGCGCAGTGTCTAAACCGGATGTGTGCGCCTTTATGGTCGA
ACCCATTCAGGGCGAAGCAGGTGTCGTGATTCCCAAACCAGGGTATTTGA
AAGCAGCCAAGAAATTATGTGAAAAGCACAACGTTCTTCTCATAGCTGAT
GAGGTCCAGACTGGGTTGGGTAGAACCGGACGAATGCTCGCTTCGGAGCA
TGAAGACGTTAAACCAGATCTTGTTGTGCTAGGGAAGGCTCTTTCTGGTG
GTGTGTATCCAGTATCTGCTGTGTTGGGCAGTGATAAGGTGCTAGGCTTG
TTACGGCCTGGCGAACATGGTTCCACATATGGTGGTAATCCGCTGGCATG
TGCAGTTGCGATAGAAGCTCTAAGCGTTCTTGAGGATGAACGTCTATGCG
AAAACGCACTAAAAATGGGCGAAGTCTTGCGAACCGCGTTAACGAAACGA
GGGCTTCCCAAGAAATTGGTCAGGGAGGTTAGAGGTGTGGGTCTCATGAA
TGCCATTGAAATTGAAGATGTTCTTGGTGAAGAGCGCACCGCATGGGAGG
TTTGCGTTGAGATGGCTAGAAATGGTGTTTTGGCTAAGCCAACGCATGGA
CACATCATTCGACTGACTCCGCCACTTGTCATCAATGAGGGTGAAGTCGA
GCAAGCCTGTGTCGTCATTCGAGATGCTGTAAGAACAGTTGGTGAAATGG
CCGCGAACGAAGGCAAGTCGCAGGCTGCATGA

protein sequence of Gcaud3190.t1

>Gcaud3190.t1 ID=Gcaud3190.t1|Name=Gcaud3190.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=444bp
MIRPQHFTAVSSRAFPVIRRSHMAEASQAAIDLEHKHGASNYHPLPVVLS
RAQGCRAWDVEGRQYLDFLAAYSAVNQGHCHPRIVTALAKQAARLTLTSR
AFHNDLLGEFQKRLCETFGYERCLPMNTGVEGGETAVKLARRWGYDCKHI
APDRARVVFARGNFWGRTIAAISSSTDPTSREGFGPFVPGYDLVDYDNLE
QLERAVSKPDVCAFMVEPIQGEAGVVIPKPGYLKAAKKLCEKHNVLLIAD
EVQTGLGRTGRMLASEHEDVKPDLVVLGKALSGGVYPVSAVLGSDKVLGL
LRPGEHGSTYGGNPLACAVAIEALSVLEDERLCENALKMGEVLRTALTKR
GLPKKLVREVRGVGLMNAIEIEDVLGEERTAWEVCVEMARNGVLAKPTHG
HIIRLTPPLVINEGEVEQACVVIRDAVRTVGEMAANEGKSQAA*

mRNA from alignment at NODE_80_length_55642_cov_4.475869:32153..33484+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3190.t1 ID=Gcaud3190.t1|Name=Gcaud3190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:32153..33484+ (Gracilaria caudata M_176_S67 male)
ATGATCCGCCCTCAGCATTTCACGGCCGTTTCTTCTCGGGCCTTTCCGGT
GATCCGTCGCTCGCACATGGCAGAAGCCTCGCAAGCCGCCATCGATCTGG
AACACAAGCACGGTGCTAGCAACTACCACCCTCTTCCGGTCGTTCTCTCT
CGTGCTCAAGGCTGCCGCGCCTGGGATGTTGAAGGCCGCCAGTATTTGGA
TTTTCTCGCCGCTTACTCAGCAGTCAACCAAGGACATTGCCATCCACGCA
TTGTAACGGCACTCGCAAAACAGGCAGCTCGTCTGACCCTCACTTCGCGT
GCATTTCACAATGATCTGCTAGGGGAATTCCAGAAGCGCCTGTGCGAAAC
CTTTGGATATGAGCGATGTTTACCCATGAATACCGGTGTGGAAGGAGGTG
AAACCGCTGTGAAACTTGCTAGAAGGTGGGGATATGACTGCAAGCATATT
GCCCCTGATCGTGCCCGGGTGGTGTTTGCCAGGGGAAATTTCTGGGGTAG
AACTATTGCTGCCATCTCATCCAGCACTGATCCTACTTCAAGGGAAGGCT
TTGGACCTTTTGTACCAGGCTATGACCTCGTTGATTACGACAATCTGGAA
CAGCTTGAACGCGCAGTGTCTAAACCGGATGTGTGCGCCTTTATGGTCGA
ACCCATTCAGGGCGAAGCAGGTGTCGTGATTCCCAAACCAGGGTATTTGA
AAGCAGCCAAGAAATTATGTGAAAAGCACAACGTTCTTCTCATAGCTGAT
GAGGTCCAGACTGGGTTGGGTAGAACCGGACGAATGCTCGCTTCGGAGCA
TGAAGACGTTAAACCAGATCTTGTTGTGCTAGGGAAGGCTCTTTCTGGTG
GTGTGTATCCAGTATCTGCTGTGTTGGGCAGTGATAAGGTGCTAGGCTTG
TTACGGCCTGGCGAACATGGTTCCACATATGGTGGTAATCCGCTGGCATG
TGCAGTTGCGATAGAAGCTCTAAGCGTTCTTGAGGATGAACGTCTATGCG
AAAACGCACTAAAAATGGGCGAAGTCTTGCGAACCGCGTTAACGAAACGA
GGGCTTCCCAAGAAATTGGTCAGGGAGGTTAGAGGTGTGGGTCTCATGAA
TGCCATTGAAATTGAAGATGTTCTTGGTGAAGAGCGCACCGCATGGGAGG
TTTGCGTTGAGATGGCTAGAAATGGTGTTTTGGCTAAGCCAACGCATGGA
CACATCATTCGACTGACTCCGCCACTTGTCATCAATGAGGGTGAAGTCGA
GCAAGCCTGTGTCGTCATTCGAGATGCTGTAAGAACAGTTGGTGAAATGG
CCGCGAACGAAGGCAAGTCGCAGGCTGCATGA

Coding sequence (CDS) from alignment at NODE_80_length_55642_cov_4.475869:32153..33484+

>Gcaud3190.t1 ID=Gcaud3190.t1|Name=Gcaud3190.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1332bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:32153..33484+ (Gracilaria caudata M_176_S67 male)
ATGATCCGCCCTCAGCATTTCACGGCCGTTTCTTCTCGGGCCTTTCCGGT
GATCCGTCGCTCGCACATGGCAGAAGCCTCGCAAGCCGCCATCGATCTGG
AACACAAGCACGGTGCTAGCAACTACCACCCTCTTCCGGTCGTTCTCTCT
CGTGCTCAAGGCTGCCGCGCCTGGGATGTTGAAGGCCGCCAGTATTTGGA
TTTTCTCGCCGCTTACTCAGCAGTCAACCAAGGACATTGCCATCCACGCA
TTGTAACGGCACTCGCAAAACAGGCAGCTCGTCTGACCCTCACTTCGCGT
GCATTTCACAATGATCTGCTAGGGGAATTCCAGAAGCGCCTGTGCGAAAC
CTTTGGATATGAGCGATGTTTACCCATGAATACCGGTGTGGAAGGAGGTG
AAACCGCTGTGAAACTTGCTAGAAGGTGGGGATATGACTGCAAGCATATT
GCCCCTGATCGTGCCCGGGTGGTGTTTGCCAGGGGAAATTTCTGGGGTAG
AACTATTGCTGCCATCTCATCCAGCACTGATCCTACTTCAAGGGAAGGCT
TTGGACCTTTTGTACCAGGCTATGACCTCGTTGATTACGACAATCTGGAA
CAGCTTGAACGCGCAGTGTCTAAACCGGATGTGTGCGCCTTTATGGTCGA
ACCCATTCAGGGCGAAGCAGGTGTCGTGATTCCCAAACCAGGGTATTTGA
AAGCAGCCAAGAAATTATGTGAAAAGCACAACGTTCTTCTCATAGCTGAT
GAGGTCCAGACTGGGTTGGGTAGAACCGGACGAATGCTCGCTTCGGAGCA
TGAAGACGTTAAACCAGATCTTGTTGTGCTAGGGAAGGCTCTTTCTGGTG
GTGTGTATCCAGTATCTGCTGTGTTGGGCAGTGATAAGGTGCTAGGCTTG
TTACGGCCTGGCGAACATGGTTCCACATATGGTGGTAATCCGCTGGCATG
TGCAGTTGCGATAGAAGCTCTAAGCGTTCTTGAGGATGAACGTCTATGCG
AAAACGCACTAAAAATGGGCGAAGTCTTGCGAACCGCGTTAACGAAACGA
GGGCTTCCCAAGAAATTGGTCAGGGAGGTTAGAGGTGTGGGTCTCATGAA
TGCCATTGAAATTGAAGATGTTCTTGGTGAAGAGCGCACCGCATGGGAGG
TTTGCGTTGAGATGGCTAGAAATGGTGTTTTGGCTAAGCCAACGCATGGA
CACATCATTCGACTGACTCCGCCACTTGTCATCAATGAGGGTGAAGTCGA
GCAAGCCTGTGTCGTCATTCGAGATGCTGTAAGAACAGTTGGTGAAATGG
CCGCGAACGAAGGCAAGTCGCAGGCTGCATGA