Gcaud319.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud319.t1
Unique NameGcaud319.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5744_length_1435_cov_5.200149contigNODE_5744_length_1435_cov_5.200149:73..753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud319Gcaud319Gracilaria caudata M_176_S67 malegeneNODE_5744_length_1435_cov_5.200149 73..753 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud319.t1.start1Gcaud319.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5744_length_1435_cov_5.200149 73..75 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud319.t1.CDS1Gcaud319.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5744_length_1435_cov_5.200149 73..753 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud319.t1.exon1Gcaud319.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5744_length_1435_cov_5.200149 73..753 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud319.t1.stop1Gcaud319.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5744_length_1435_cov_5.200149 751..753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud319.t1Gcaud319.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5744_length_1435_cov_5.200149 73..753 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud319.t1 ID=Gcaud319.t1|Name=Gcaud319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=227bp
MVQPLERADEENALKSYLRSVREEVDYSEIRLSSIVLGSSGHRMRPRMPL
AESYWHLASQQESLTKPVVWLGHALPDSSIHTLRLPKGYYTLTNTTEYRT
RSGIGMKIIHMKFKSWYDFIQKSRRGRNSMAMNNFHLASIWTEDNASPGH
MQEMNKESFTDFRSSWRRVVSRTVREGKIVGYGEKQKRYEQVKRKGYAWK
NRSGLESSVFINSIIEREKELIPMNA*
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spliced messenger RNA

>Gcaud319.t1 ID=Gcaud319.t1|Name=Gcaud319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp|location=Sequence derived from alignment at NODE_5744_length_1435_cov_5.200149:73..753+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCAGCCGTTGGAAAGGGCTGATGAAGAGAATGCATTGAAGTCATA
CTTGAGAAGCGTAAGAGAAGAGGTCGATTACTCTGAGATAAGGTTGAGTT
CCATCGTTCTTGGTTCATCTGGTCATAGGATGCGACCTAGAATGCCTCTG
GCAGAGTCATATTGGCATCTTGCATCCCAGCAAGAGAGTTTGACAAAGCC
AGTTGTATGGTTAGGGCATGCTCTTCCGGACAGTTCCATTCACACTTTAC
GTCTTCCAAAAGGGTATTACACATTGACAAACACAACAGAGTACCGTACA
AGGAGTGGAATTGGGATGAAAATAATTCATATGAAGTTCAAATCATGGTA
TGACTTCATTCAGAAAAGTCGTCGTGGACGAAATTCAATGGCAATGAATA
ATTTTCACCTAGCATCGATATGGACTGAAGATAATGCGTCTCCGGGACAT
ATGCAGGAAATGAACAAAGAGAGTTTCACTGATTTTCGATCAAGCTGGAG
AAGGGTTGTATCAAGAACTGTGAGAGAGGGGAAGATCGTGGGATATGGCG
AGAAGCAAAAACGATATGAACAGGTGAAAAGAAAGGGGTACGCTTGGAAA
AATCGGTCTGGTTTGGAGTCGAGTGTTTTCATCAATAGTATTATTGAAAG
AGAAAAAGAACTCATACCAATGAATGCGTAG
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protein sequence of Gcaud319.t1

>Gcaud319.t1 ID=Gcaud319.t1|Name=Gcaud319.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=227bp
MVQPLERADEENALKSYLRSVREEVDYSEIRLSSIVLGSSGHRMRPRMPL
AESYWHLASQQESLTKPVVWLGHALPDSSIHTLRLPKGYYTLTNTTEYRT
RSGIGMKIIHMKFKSWYDFIQKSRRGRNSMAMNNFHLASIWTEDNASPGH
MQEMNKESFTDFRSSWRRVVSRTVREGKIVGYGEKQKRYEQVKRKGYAWK
NRSGLESSVFINSIIEREKELIPMNA*
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mRNA from alignment at NODE_5744_length_1435_cov_5.200149:73..753+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud319.t1 ID=Gcaud319.t1|Name=Gcaud319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp|location=Sequence derived from alignment at NODE_5744_length_1435_cov_5.200149:73..753+ (Gracilaria caudata M_176_S67 male)
ATGGTTCAGCCGTTGGAAAGGGCTGATGAAGAGAATGCATTGAAGTCATA
CTTGAGAAGCGTAAGAGAAGAGGTCGATTACTCTGAGATAAGGTTGAGTT
CCATCGTTCTTGGTTCATCTGGTCATAGGATGCGACCTAGAATGCCTCTG
GCAGAGTCATATTGGCATCTTGCATCCCAGCAAGAGAGTTTGACAAAGCC
AGTTGTATGGTTAGGGCATGCTCTTCCGGACAGTTCCATTCACACTTTAC
GTCTTCCAAAAGGGTATTACACATTGACAAACACAACAGAGTACCGTACA
AGGAGTGGAATTGGGATGAAAATAATTCATATGAAGTTCAAATCATGGTA
TGACTTCATTCAGAAAAGTCGTCGTGGACGAAATTCAATGGCAATGAATA
ATTTTCACCTAGCATCGATATGGACTGAAGATAATGCGTCTCCGGGACAT
ATGCAGGAAATGAACAAAGAGAGTTTCACTGATTTTCGATCAAGCTGGAG
AAGGGTTGTATCAAGAACTGTGAGAGAGGGGAAGATCGTGGGATATGGCG
AGAAGCAAAAACGATATGAACAGGTGAAAAGAAAGGGGTACGCTTGGAAA
AATCGGTCTGGTTTGGAGTCGAGTGTTTTCATCAATAGTATTATTGAAAG
AGAAAAAGAACTCATACCAATGAATGCGTAG
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Coding sequence (CDS) from alignment at NODE_5744_length_1435_cov_5.200149:73..753+

>Gcaud319.t1 ID=Gcaud319.t1|Name=Gcaud319.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=681bp|location=Sequence derived from alignment at NODE_5744_length_1435_cov_5.200149:73..753+ (Gracilaria caudata M_176_S67 male)
ATGGTTCAGCCGTTGGAAAGGGCTGATGAAGAGAATGCATTGAAGTCATA
CTTGAGAAGCGTAAGAGAAGAGGTCGATTACTCTGAGATAAGGTTGAGTT
CCATCGTTCTTGGTTCATCTGGTCATAGGATGCGACCTAGAATGCCTCTG
GCAGAGTCATATTGGCATCTTGCATCCCAGCAAGAGAGTTTGACAAAGCC
AGTTGTATGGTTAGGGCATGCTCTTCCGGACAGTTCCATTCACACTTTAC
GTCTTCCAAAAGGGTATTACACATTGACAAACACAACAGAGTACCGTACA
AGGAGTGGAATTGGGATGAAAATAATTCATATGAAGTTCAAATCATGGTA
TGACTTCATTCAGAAAAGTCGTCGTGGACGAAATTCAATGGCAATGAATA
ATTTTCACCTAGCATCGATATGGACTGAAGATAATGCGTCTCCGGGACAT
ATGCAGGAAATGAACAAAGAGAGTTTCACTGATTTTCGATCAAGCTGGAG
AAGGGTTGTATCAAGAACTGTGAGAGAGGGGAAGATCGTGGGATATGGCG
AGAAGCAAAAACGATATGAACAGGTGAAAAGAAAGGGGTACGCTTGGAAA
AATCGGTCTGGTTTGGAGTCGAGTGTTTTCATCAATAGTATTATTGAAAG
AGAAAAAGAACTCATACCAATGAATGCGTAG
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