Gcaud3189.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3189.t1
Unique NameGcaud3189.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_80_length_55642_cov_4.475869contigNODE_80_length_55642_cov_4.475869:30833..31676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM052CT
PFAMsHexapep
Max annot lvl2759|Eukaryota
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004089,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009853,GO:0009900,GO:0009901,GO:0009908,GO:0009987,GO:0010033,GO:0016020,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0019222,GO:0019866,GO:0022414,GO:0022607,GO:0030964,GO:0031090,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0042221,GO:0042802,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048609,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051259,GO:0051260,GO:0061458,GO:0065003,GO:0065007,GO:0070206,GO:0070207,GO:0070469,GO:0071840,GO:0090567,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0099402,GO:1902494,GO:1990204,GO:2000377
Evalue5e-45
EggNOG OGsCOG0663@1|root,2QTES@2759|Eukaryota
Descriptioncarbonate dehydratase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3189Gcaud3189Gracilaria caudata M_176_S67 malegeneNODE_80_length_55642_cov_4.475869 30833..31676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3189.t1Gcaud3189.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_80_length_55642_cov_4.475869 30833..31676 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3189.t1.stop1Gcaud3189.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_80_length_55642_cov_4.475869 30833..30835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3189.t1.CDS1Gcaud3189.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_80_length_55642_cov_4.475869 30833..31518 -
Gcaud3189.t1.CDS2Gcaud3189.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_80_length_55642_cov_4.475869 31598..31676 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3189.t1.exon1Gcaud3189.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_80_length_55642_cov_4.475869 30833..31518 -
Gcaud3189.t1.exon2Gcaud3189.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_80_length_55642_cov_4.475869 31598..31676 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3189.t1.intron1Gcaud3189.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_80_length_55642_cov_4.475869 31519..31597 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3189.t1.start1Gcaud3189.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_80_length_55642_cov_4.475869 31674..31676 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3189.t1 ID=Gcaud3189.t1|Name=Gcaud3189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp
MMIRETGQALDRLGCSLQGKYAYVEQLSRHRQIMNLEDSKPIISTPAFIA
PSASLIGNVELSPSSSVWYGAVLRADSAPILVGPRASIGDRAVVRGASHV
DADATVHPGAVIDSAHVGARAVVGASAVVAPGAIVAEQSVLRDGSFLPEG
TSTAPGEVWSGSPAQSERALTQDEITAIASHVKDLVTLAGAHATECGKTH
EQIEAEKLRQGLLEERSEDYNSHLGLLGKEREIVETQATLIEQDREEQRK
VGTA*
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spliced messenger RNA

>Gcaud3189.t1 ID=Gcaud3189.t1|Name=Gcaud3189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:30833..31676- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATCCGTGAAACGGGGCAAGCGCTCGACCGCTTGGGATGCAGCCT
GCAAGGCAAGTACGCCTATGTGGAGCAGCTGAGCAGGCATCGTCAGATCA
TGAATCTGGAGGATTCTAAGCCCATCATCTCTACGCCCGCTTTCATTGCT
CCTTCGGCTTCGCTCATTGGCAACGTTGAGCTGTCCCCGTCGTCTTCCGT
GTGGTACGGCGCCGTGCTTCGTGCCGATAGCGCTCCTATTCTAGTTGGAC
CACGCGCGTCCATTGGCGATCGCGCAGTTGTTCGAGGCGCGTCGCATGTG
GACGCTGACGCTACAGTTCATCCAGGCGCTGTCATCGATTCCGCCCATGT
TGGGGCACGTGCTGTTGTGGGCGCATCTGCCGTAGTTGCGCCGGGCGCCA
TAGTGGCGGAGCAATCGGTCTTGCGCGATGGCTCATTCTTGCCAGAAGGC
ACCAGCACTGCACCTGGTGAAGTGTGGTCTGGTTCGCCCGCGCAGAGTGA
GCGTGCACTCACCCAGGATGAGATCACTGCTATTGCCTCCCATGTGAAGG
ATCTCGTTACCCTGGCAGGTGCACACGCAACTGAATGCGGCAAGACTCAT
GAGCAGATTGAAGCAGAAAAATTGAGACAGGGGCTTTTGGAGGAACGATC
TGAGGATTATAACAGCCATCTGGGATTACTGGGCAAGGAAAGAGAGATTG
TTGAGACTCAAGCAACTCTTATTGAGCAGGATCGTGAGGAACAGCGCAAA
GTTGGCACTGCTTAA
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protein sequence of Gcaud3189.t1

>Gcaud3189.t1 ID=Gcaud3189.t1|Name=Gcaud3189.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MMIRETGQALDRLGCSLQGKYAYVEQLSRHRQIMNLEDSKPIISTPAFIA
PSASLIGNVELSPSSSVWYGAVLRADSAPILVGPRASIGDRAVVRGASHV
DADATVHPGAVIDSAHVGARAVVGASAVVAPGAIVAEQSVLRDGSFLPEG
TSTAPGEVWSGSPAQSERALTQDEITAIASHVKDLVTLAGAHATECGKTH
EQIEAEKLRQGLLEERSEDYNSHLGLLGKEREIVETQATLIEQDREEQRK
VGTA*
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mRNA from alignment at NODE_80_length_55642_cov_4.475869:30833..31676-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3189.t1 ID=Gcaud3189.t1|Name=Gcaud3189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=844bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:30833..31676- (Gracilaria caudata M_176_S67 male)
ATGATGATCCGTGAAACGGGGCAAGCGCTCGACCGCTTGGGATGCAGCCT
GCAAGGCAAGTACGCCTATGTGGAGCAGCGTAAGTGTGCACCCGTCCATC
CCCACCCCCGCGCCATTCCCCTTCTAACGTCTCCATTTGGTTGCTTATGA
GCGCGCAGTGAGCAGGCATCGTCAGATCATGAATCTGGAGGATTCTAAGC
CCATCATCTCTACGCCCGCTTTCATTGCTCCTTCGGCTTCGCTCATTGGC
AACGTTGAGCTGTCCCCGTCGTCTTCCGTGTGGTACGGCGCCGTGCTTCG
TGCCGATAGCGCTCCTATTCTAGTTGGACCACGCGCGTCCATTGGCGATC
GCGCAGTTGTTCGAGGCGCGTCGCATGTGGACGCTGACGCTACAGTTCAT
CCAGGCGCTGTCATCGATTCCGCCCATGTTGGGGCACGTGCTGTTGTGGG
CGCATCTGCCGTAGTTGCGCCGGGCGCCATAGTGGCGGAGCAATCGGTCT
TGCGCGATGGCTCATTCTTGCCAGAAGGCACCAGCACTGCACCTGGTGAA
GTGTGGTCTGGTTCGCCCGCGCAGAGTGAGCGTGCACTCACCCAGGATGA
GATCACTGCTATTGCCTCCCATGTGAAGGATCTCGTTACCCTGGCAGGTG
CACACGCAACTGAATGCGGCAAGACTCATGAGCAGATTGAAGCAGAAAAA
TTGAGACAGGGGCTTTTGGAGGAACGATCTGAGGATTATAACAGCCATCT
GGGATTACTGGGCAAGGAAAGAGAGATTGTTGAGACTCAAGCAACTCTTA
TTGAGCAGGATCGTGAGGAACAGCGCAAAGTTGGCACTGCTTAA
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Coding sequence (CDS) from alignment at NODE_80_length_55642_cov_4.475869:30833..31676-

>Gcaud3189.t1 ID=Gcaud3189.t1|Name=Gcaud3189.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=765bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:30833..31676- (Gracilaria caudata M_176_S67 male)
ATGATGATCCGTGAAACGGGGCAAGCGCTCGACCGCTTGGGATGCAGCCT
GCAAGGCAAGTACGCCTATGTGGAGCAGCTGAGCAGGCATCGTCAGATCA
TGAATCTGGAGGATTCTAAGCCCATCATCTCTACGCCCGCTTTCATTGCT
CCTTCGGCTTCGCTCATTGGCAACGTTGAGCTGTCCCCGTCGTCTTCCGT
GTGGTACGGCGCCGTGCTTCGTGCCGATAGCGCTCCTATTCTAGTTGGAC
CACGCGCGTCCATTGGCGATCGCGCAGTTGTTCGAGGCGCGTCGCATGTG
GACGCTGACGCTACAGTTCATCCAGGCGCTGTCATCGATTCCGCCCATGT
TGGGGCACGTGCTGTTGTGGGCGCATCTGCCGTAGTTGCGCCGGGCGCCA
TAGTGGCGGAGCAATCGGTCTTGCGCGATGGCTCATTCTTGCCAGAAGGC
ACCAGCACTGCACCTGGTGAAGTGTGGTCTGGTTCGCCCGCGCAGAGTGA
GCGTGCACTCACCCAGGATGAGATCACTGCTATTGCCTCCCATGTGAAGG
ATCTCGTTACCCTGGCAGGTGCACACGCAACTGAATGCGGCAAGACTCAT
GAGCAGATTGAAGCAGAAAAATTGAGACAGGGGCTTTTGGAGGAACGATC
TGAGGATTATAACAGCCATCTGGGATTACTGGGCAAGGAAAGAGAGATTG
TTGAGACTCAAGCAACTCTTATTGAGCAGGATCGTGAGGAACAGCGCAAA
GTTGGCACTGCTTAA
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