Gcaud3187.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3187.t1
Unique Name	Gcaud3187.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	616

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_80_length_55642_cov_4.475869	contig	NODE_80_length_55642_cov_4.475869:24216..26063 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	526227.Mesil_1090
PFAMs	5_nucleotid_C,Big_3_2,Big_3_5,Metallophos,ThuA,VCBS
Max annot lvl	2\|Bacteria
Evalue	8.51e-18
EggNOG OGs	COG3828@1\|root,COG3828@2\|Bacteria,1WNGT@1297\|Deinococcus-Thermus
Description	Trehalose utilisation
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3187	Gcaud3187	Gracilaria caudata M_176_S67 male	gene	NODE_80_length_55642_cov_4.475869 24216..26063 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3187.t1.stop1	Gcaud3187.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_80_length_55642_cov_4.475869 24216..24218 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3187.t1.CDS1	Gcaud3187.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_80_length_55642_cov_4.475869 24216..26063 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3187.t1.exon1	Gcaud3187.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_80_length_55642_cov_4.475869 24216..26063 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3187.t1.start1	Gcaud3187.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_80_length_55642_cov_4.475869 26061..26063 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3187.t1	Gcaud3187.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_80_length_55642_cov_4.475869 24216..26063 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_80_length_55642_cov_4.475869:24216..26063-
coding sequence from alignment at NODE_80_length_55642_cov_4.475869:24216..26063-

mRNA sequence

>Gcaud3187.t1 ID=Gcaud3187.t1|Name=Gcaud3187.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=616bp
MATETVSLDIANYSYVDHPLYTNTKYNETRPKPVVMNRYYRLLDSGHTTL
GMLFAPHSALYERFPSKESFSTTPLDALFITPSKAKESATYVEVHLNHRS
RIFLLLNARDLKGAHLRQLESVDGLEGNWTGLFALRSSSGRAIEVGDSER
TGRTFKLPSHAAVVETIVEKDVPLLLPYPSSIKVNGIPCSRMTLLFANAT
QNGSIEAFEYPGVPETVWSPFNGDVVDGVEVKANEKCPEWLHDLHVTETR
DKAVAEEMEEPLVWRTWHAPIDSIYWCYYDHEHGSYPGEYRPMFGYTAWK
TADSSTSHGRQDESHDGFKTFSFVLEEQKRVVVIVIHMHLSRGRRFVTRH
HTSILAIMNENWEVIVEFHMKQDFGAALGTLRNGKTIALDVHENEILEEL
KMFGKRSGRRFNVLSPEFRKRSDNKKSKMNKAKVRALETAQKLRGIYEVW
NGALNTCSWSKRRFVGGGNDRGISFDIRNPATTLIDTKQAPRHEAIEALV
GNSMDRFIRIKSDVEIGPRHCWFDIFSSEAGIDVEKTGGVFYTDAYFRGV
KKSTGRFYPRQYLKMTSTSDVVVLKEGKLLIADGWNGHYYYESQDGKAGG
RRLVNTEGAVRANVN*

spliced messenger RNA

>Gcaud3187.t1 ID=Gcaud3187.t1|Name=Gcaud3187.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1848bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:24216..26063- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACTGAAACCGTGTCGTTGGATATTGCCAACTACAGCTATGTGGA
TCACCCGCTGTACACAAATACTAAATATAATGAAACTCGACCGAAACCAG
TCGTGATGAATAGGTACTACCGATTATTGGACTCCGGACATACGACTCTT
GGAATGCTATTCGCTCCTCATTCGGCTTTGTATGAACGTTTTCCGTCGAA
AGAATCCTTCTCAACAACGCCCTTGGATGCTTTGTTCATCACTCCGAGCA
AGGCAAAAGAAAGTGCTACGTATGTTGAAGTGCACCTTAATCATCGTTCG
CGGATATTCCTTTTGCTTAACGCACGTGATTTGAAAGGCGCACATTTGCG
ACAACTGGAATCAGTCGACGGGCTAGAAGGTAACTGGACTGGATTGTTTG
CGCTTCGCTCGTCGTCCGGAAGAGCCATTGAAGTGGGCGACTCAGAGAGA
ACCGGAAGGACGTTCAAACTACCGTCGCATGCAGCCGTTGTTGAAACAAT
CGTGGAGAAGGACGTCCCACTGTTACTGCCATACCCAAGTTCTATTAAAG
TGAATGGGATACCTTGCTCTCGAATGACCTTGCTCTTCGCAAATGCGACT
CAAAATGGAAGTATAGAGGCATTTGAATACCCAGGTGTACCTGAAACCGT
ATGGTCTCCATTCAACGGGGATGTTGTGGACGGAGTGGAAGTGAAAGCAA
ATGAGAAGTGTCCAGAATGGCTACATGACCTTCATGTGACTGAAACGAGG
GATAAGGCCGTTGCCGAGGAAATGGAAGAACCACTGGTTTGGCGAACTTG
GCATGCTCCCATCGATAGCATCTATTGGTGTTACTATGACCACGAACATG
GCTCTTACCCCGGCGAGTATCGACCCATGTTTGGGTACACAGCTTGGAAA
ACTGCAGATTCTTCCACTAGTCATGGACGTCAGGATGAGTCACATGATGG
ATTCAAGACGTTCTCTTTTGTTCTGGAAGAGCAAAAGCGAGTGGTTGTGA
TTGTCATTCACATGCATCTCAGTCGCGGGAGACGATTTGTTACCAGACAT
CATACAAGTATTCTGGCAATCATGAATGAGAATTGGGAAGTGATAGTCGA
GTTCCACATGAAACAAGACTTCGGAGCAGCTCTGGGTACATTACGTAATG
GAAAGACCATTGCACTTGATGTGCATGAGAACGAAATTCTGGAGGAGCTG
AAAATGTTTGGAAAGCGCTCTGGAAGACGCTTCAACGTTCTCAGCCCCGA
GTTCCGAAAGCGCTCTGACAACAAGAAGTCAAAAATGAACAAGGCTAAGG
TGAGGGCGCTTGAAACGGCACAAAAACTGCGCGGGATATATGAGGTATGG
AATGGTGCTCTTAACACGTGCTCATGGTCCAAACGGCGCTTTGTGGGAGG
TGGCAACGACCGAGGGATTTCATTCGACATAAGAAACCCAGCAACAACGT
TGATTGATACGAAACAAGCGCCACGGCACGAAGCTATTGAGGCCTTGGTT
GGAAACAGTATGGACCGATTCATTCGTATCAAATCCGATGTGGAAATCGG
CCCGAGACACTGCTGGTTTGACATCTTCTCCAGTGAAGCTGGAATCGATG
TGGAAAAGACTGGAGGAGTGTTTTACACAGATGCGTATTTCAGGGGGGTG
AAGAAGTCCACCGGCAGATTCTATCCGCGACAGTACCTGAAAATGACGAG
TACCTCGGATGTGGTGGTTTTGAAGGAAGGGAAACTGCTTATCGCGGATG
GATGGAATGGCCATTATTACTATGAGAGCCAGGACGGTAAGGCTGGTGGA
AGACGTTTGGTAAACACCGAGGGCGCGGTGCGTGCCAATGTTAACTAA

protein sequence of Gcaud3187.t1

>Gcaud3187.t1 ID=Gcaud3187.t1|Name=Gcaud3187.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=616bp
MATETVSLDIANYSYVDHPLYTNTKYNETRPKPVVMNRYYRLLDSGHTTL
GMLFAPHSALYERFPSKESFSTTPLDALFITPSKAKESATYVEVHLNHRS
RIFLLLNARDLKGAHLRQLESVDGLEGNWTGLFALRSSSGRAIEVGDSER
TGRTFKLPSHAAVVETIVEKDVPLLLPYPSSIKVNGIPCSRMTLLFANAT
QNGSIEAFEYPGVPETVWSPFNGDVVDGVEVKANEKCPEWLHDLHVTETR
DKAVAEEMEEPLVWRTWHAPIDSIYWCYYDHEHGSYPGEYRPMFGYTAWK
TADSSTSHGRQDESHDGFKTFSFVLEEQKRVVVIVIHMHLSRGRRFVTRH
HTSILAIMNENWEVIVEFHMKQDFGAALGTLRNGKTIALDVHENEILEEL
KMFGKRSGRRFNVLSPEFRKRSDNKKSKMNKAKVRALETAQKLRGIYEVW
NGALNTCSWSKRRFVGGGNDRGISFDIRNPATTLIDTKQAPRHEAIEALV
GNSMDRFIRIKSDVEIGPRHCWFDIFSSEAGIDVEKTGGVFYTDAYFRGV
KKSTGRFYPRQYLKMTSTSDVVVLKEGKLLIADGWNGHYYYESQDGKAGG
RRLVNTEGAVRANVN*

mRNA from alignment at NODE_80_length_55642_cov_4.475869:24216..26063-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3187.t1 ID=Gcaud3187.t1|Name=Gcaud3187.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1848bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:24216..26063- (Gracilaria caudata M_176_S67 male)
ATGGCAACTGAAACCGTGTCGTTGGATATTGCCAACTACAGCTATGTGGA
TCACCCGCTGTACACAAATACTAAATATAATGAAACTCGACCGAAACCAG
TCGTGATGAATAGGTACTACCGATTATTGGACTCCGGACATACGACTCTT
GGAATGCTATTCGCTCCTCATTCGGCTTTGTATGAACGTTTTCCGTCGAA
AGAATCCTTCTCAACAACGCCCTTGGATGCTTTGTTCATCACTCCGAGCA
AGGCAAAAGAAAGTGCTACGTATGTTGAAGTGCACCTTAATCATCGTTCG
CGGATATTCCTTTTGCTTAACGCACGTGATTTGAAAGGCGCACATTTGCG
ACAACTGGAATCAGTCGACGGGCTAGAAGGTAACTGGACTGGATTGTTTG
CGCTTCGCTCGTCGTCCGGAAGAGCCATTGAAGTGGGCGACTCAGAGAGA
ACCGGAAGGACGTTCAAACTACCGTCGCATGCAGCCGTTGTTGAAACAAT
CGTGGAGAAGGACGTCCCACTGTTACTGCCATACCCAAGTTCTATTAAAG
TGAATGGGATACCTTGCTCTCGAATGACCTTGCTCTTCGCAAATGCGACT
CAAAATGGAAGTATAGAGGCATTTGAATACCCAGGTGTACCTGAAACCGT
ATGGTCTCCATTCAACGGGGATGTTGTGGACGGAGTGGAAGTGAAAGCAA
ATGAGAAGTGTCCAGAATGGCTACATGACCTTCATGTGACTGAAACGAGG
GATAAGGCCGTTGCCGAGGAAATGGAAGAACCACTGGTTTGGCGAACTTG
GCATGCTCCCATCGATAGCATCTATTGGTGTTACTATGACCACGAACATG
GCTCTTACCCCGGCGAGTATCGACCCATGTTTGGGTACACAGCTTGGAAA
ACTGCAGATTCTTCCACTAGTCATGGACGTCAGGATGAGTCACATGATGG
ATTCAAGACGTTCTCTTTTGTTCTGGAAGAGCAAAAGCGAGTGGTTGTGA
TTGTCATTCACATGCATCTCAGTCGCGGGAGACGATTTGTTACCAGACAT
CATACAAGTATTCTGGCAATCATGAATGAGAATTGGGAAGTGATAGTCGA
GTTCCACATGAAACAAGACTTCGGAGCAGCTCTGGGTACATTACGTAATG
GAAAGACCATTGCACTTGATGTGCATGAGAACGAAATTCTGGAGGAGCTG
AAAATGTTTGGAAAGCGCTCTGGAAGACGCTTCAACGTTCTCAGCCCCGA
GTTCCGAAAGCGCTCTGACAACAAGAAGTCAAAAATGAACAAGGCTAAGG
TGAGGGCGCTTGAAACGGCACAAAAACTGCGCGGGATATATGAGGTATGG
AATGGTGCTCTTAACACGTGCTCATGGTCCAAACGGCGCTTTGTGGGAGG
TGGCAACGACCGAGGGATTTCATTCGACATAAGAAACCCAGCAACAACGT
TGATTGATACGAAACAAGCGCCACGGCACGAAGCTATTGAGGCCTTGGTT
GGAAACAGTATGGACCGATTCATTCGTATCAAATCCGATGTGGAAATCGG
CCCGAGACACTGCTGGTTTGACATCTTCTCCAGTGAAGCTGGAATCGATG
TGGAAAAGACTGGAGGAGTGTTTTACACAGATGCGTATTTCAGGGGGGTG
AAGAAGTCCACCGGCAGATTCTATCCGCGACAGTACCTGAAAATGACGAG
TACCTCGGATGTGGTGGTTTTGAAGGAAGGGAAACTGCTTATCGCGGATG
GATGGAATGGCCATTATTACTATGAGAGCCAGGACGGTAAGGCTGGTGGA
AGACGTTTGGTAAACACCGAGGGCGCGGTGCGTGCCAATGTTAACTAA

Coding sequence (CDS) from alignment at NODE_80_length_55642_cov_4.475869:24216..26063-

>Gcaud3187.t1 ID=Gcaud3187.t1|Name=Gcaud3187.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1848bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:24216..26063- (Gracilaria caudata M_176_S67 male)
ATGGCAACTGAAACCGTGTCGTTGGATATTGCCAACTACAGCTATGTGGA
TCACCCGCTGTACACAAATACTAAATATAATGAAACTCGACCGAAACCAG
TCGTGATGAATAGGTACTACCGATTATTGGACTCCGGACATACGACTCTT
GGAATGCTATTCGCTCCTCATTCGGCTTTGTATGAACGTTTTCCGTCGAA
AGAATCCTTCTCAACAACGCCCTTGGATGCTTTGTTCATCACTCCGAGCA
AGGCAAAAGAAAGTGCTACGTATGTTGAAGTGCACCTTAATCATCGTTCG
CGGATATTCCTTTTGCTTAACGCACGTGATTTGAAAGGCGCACATTTGCG
ACAACTGGAATCAGTCGACGGGCTAGAAGGTAACTGGACTGGATTGTTTG
CGCTTCGCTCGTCGTCCGGAAGAGCCATTGAAGTGGGCGACTCAGAGAGA
ACCGGAAGGACGTTCAAACTACCGTCGCATGCAGCCGTTGTTGAAACAAT
CGTGGAGAAGGACGTCCCACTGTTACTGCCATACCCAAGTTCTATTAAAG
TGAATGGGATACCTTGCTCTCGAATGACCTTGCTCTTCGCAAATGCGACT
CAAAATGGAAGTATAGAGGCATTTGAATACCCAGGTGTACCTGAAACCGT
ATGGTCTCCATTCAACGGGGATGTTGTGGACGGAGTGGAAGTGAAAGCAA
ATGAGAAGTGTCCAGAATGGCTACATGACCTTCATGTGACTGAAACGAGG
GATAAGGCCGTTGCCGAGGAAATGGAAGAACCACTGGTTTGGCGAACTTG
GCATGCTCCCATCGATAGCATCTATTGGTGTTACTATGACCACGAACATG
GCTCTTACCCCGGCGAGTATCGACCCATGTTTGGGTACACAGCTTGGAAA
ACTGCAGATTCTTCCACTAGTCATGGACGTCAGGATGAGTCACATGATGG
ATTCAAGACGTTCTCTTTTGTTCTGGAAGAGCAAAAGCGAGTGGTTGTGA
TTGTCATTCACATGCATCTCAGTCGCGGGAGACGATTTGTTACCAGACAT
CATACAAGTATTCTGGCAATCATGAATGAGAATTGGGAAGTGATAGTCGA
GTTCCACATGAAACAAGACTTCGGAGCAGCTCTGGGTACATTACGTAATG
GAAAGACCATTGCACTTGATGTGCATGAGAACGAAATTCTGGAGGAGCTG
AAAATGTTTGGAAAGCGCTCTGGAAGACGCTTCAACGTTCTCAGCCCCGA
GTTCCGAAAGCGCTCTGACAACAAGAAGTCAAAAATGAACAAGGCTAAGG
TGAGGGCGCTTGAAACGGCACAAAAACTGCGCGGGATATATGAGGTATGG
AATGGTGCTCTTAACACGTGCTCATGGTCCAAACGGCGCTTTGTGGGAGG
TGGCAACGACCGAGGGATTTCATTCGACATAAGAAACCCAGCAACAACGT
TGATTGATACGAAACAAGCGCCACGGCACGAAGCTATTGAGGCCTTGGTT
GGAAACAGTATGGACCGATTCATTCGTATCAAATCCGATGTGGAAATCGG
CCCGAGACACTGCTGGTTTGACATCTTCTCCAGTGAAGCTGGAATCGATG
TGGAAAAGACTGGAGGAGTGTTTTACACAGATGCGTATTTCAGGGGGGTG
AAGAAGTCCACCGGCAGATTCTATCCGCGACAGTACCTGAAAATGACGAG
TACCTCGGATGTGGTGGTTTTGAAGGAAGGGAAACTGCTTATCGCGGATG
GATGGAATGGCCATTATTACTATGAGAGCCAGGACGGTAAGGCTGGTGGA
AGACGTTTGGTAAACACCGAGGGCGCGGTGCGTGCCAATGTTAACTAA