Gcaud3184.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3184.t1
Unique Name	Gcaud3184.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	310

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_80_length_55642_cov_4.475869	contig	NODE_80_length_55642_cov_4.475869:9956..10885 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	70448.A0A090M8J3
PFAMs	Hydrolase_3
Max annot lvl	3041\|Chlorophyta
Evalue	1.12e-38
EggNOG OGs	COG0561@1\|root,2S1YA@2759\|Eukaryota,388N7@33090\|Viridiplantae,34JF1@3041\|Chlorophyta
Description	Sucrose-6F-phosphate phosphohydrolase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3184	Gcaud3184	Gracilaria caudata M_176_S67 male	gene	NODE_80_length_55642_cov_4.475869 9956..10885 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3184.t1.start1	Gcaud3184.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_80_length_55642_cov_4.475869 9956..9958 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3184.t1.CDS1	Gcaud3184.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_80_length_55642_cov_4.475869 9956..10885 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3184.t1.exon1	Gcaud3184.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_80_length_55642_cov_4.475869 9956..10885 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3184.t1.stop1	Gcaud3184.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_80_length_55642_cov_4.475869 10883..10885 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3184.t1	Gcaud3184.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_80_length_55642_cov_4.475869 9956..10885 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_80_length_55642_cov_4.475869:9956..10885+
coding sequence from alignment at NODE_80_length_55642_cov_4.475869:9956..10885+

mRNA sequence

>Gcaud3184.t1 ID=Gcaud3184.t1|Name=Gcaud3184.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=310bp
MLLFHLPPFHRLVTPHTTPRRISPPYVCNIHASIQSSRPNIRIIVSDIDG
TLLTSKKRLHPKNEPLVKRAVESGVLFVPATGKSASGALKALGDSLTSFL
TNTQPSMPGIFLNGLLVKANGRVIFERTLGKLDVLKVLQELNRLELTPLL
YSADNVLVYKRSSYTDMFMVSYEPEPQEADLEKRAAQVPVHKVLVVDETG
GDIRRFRSDLSRSLKKVATITQARPDVLEVLPKGASKGKALQHLLSYLQI
SKESAMAVGDGENDLEMLQVAGLAVATGNAVPTLMDVAHHVVCGNDHGAV
ADAINKFVL*

spliced messenger RNA

>Gcaud3184.t1 ID=Gcaud3184.t1|Name=Gcaud3184.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=930bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:9956..10885+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCTCTTTCATCTTCCACCGTTTCATAGACTTGTAACGCCGCACAC
CACGCCCCGCCGCATATCGCCACCATACGTCTGCAATATTCATGCATCCA
TTCAATCATCGCGCCCGAACATTCGAATCATAGTCAGCGACATTGATGGA
ACACTTCTCACCTCGAAGAAACGTCTTCACCCGAAGAATGAACCTCTTGT
GAAGCGTGCGGTCGAATCGGGAGTTTTGTTCGTTCCTGCCACAGGAAAAT
CAGCCAGCGGGGCCCTGAAAGCTCTTGGAGATTCTCTAACCTCCTTTTTG
ACTAACACGCAGCCCTCCATGCCGGGCATCTTCCTCAATGGTTTGTTAGT
AAAGGCGAATGGACGAGTGATATTCGAAAGAACCCTTGGCAAGTTGGACG
TGCTGAAAGTGTTGCAAGAGTTAAATCGTCTAGAGCTCACACCATTATTG
TATTCCGCTGATAACGTACTGGTGTACAAAAGATCATCCTACACGGACAT
GTTCATGGTATCCTACGAACCGGAACCGCAAGAGGCTGACTTGGAGAAAC
GAGCCGCACAAGTGCCTGTCCACAAGGTTCTGGTGGTTGATGAAACTGGA
GGAGATATACGGCGTTTCAGAAGTGATCTTTCTCGTTCATTGAAGAAAGT
GGCAACTATCACACAGGCACGACCAGATGTATTGGAGGTCTTGCCAAAAG
GGGCAAGCAAGGGAAAAGCGCTTCAACACTTGTTGTCGTACTTGCAGATT
TCGAAAGAGAGTGCTATGGCCGTTGGAGATGGGGAAAATGATTTGGAAAT
GTTGCAGGTCGCTGGACTAGCGGTTGCGACAGGAAACGCCGTTCCTACAT
TGATGGATGTGGCTCATCACGTTGTTTGTGGTAATGATCACGGAGCGGTT
GCAGATGCCATTAACAAGTTTGTACTTTAA

protein sequence of Gcaud3184.t1

>Gcaud3184.t1 ID=Gcaud3184.t1|Name=Gcaud3184.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=310bp
MLLFHLPPFHRLVTPHTTPRRISPPYVCNIHASIQSSRPNIRIIVSDIDG
TLLTSKKRLHPKNEPLVKRAVESGVLFVPATGKSASGALKALGDSLTSFL
TNTQPSMPGIFLNGLLVKANGRVIFERTLGKLDVLKVLQELNRLELTPLL
YSADNVLVYKRSSYTDMFMVSYEPEPQEADLEKRAAQVPVHKVLVVDETG
GDIRRFRSDLSRSLKKVATITQARPDVLEVLPKGASKGKALQHLLSYLQI
SKESAMAVGDGENDLEMLQVAGLAVATGNAVPTLMDVAHHVVCGNDHGAV
ADAINKFVL*

mRNA from alignment at NODE_80_length_55642_cov_4.475869:9956..10885+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3184.t1 ID=Gcaud3184.t1|Name=Gcaud3184.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=930bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:9956..10885+ (Gracilaria caudata M_176_S67 male)
ATGTTGCTCTTTCATCTTCCACCGTTTCATAGACTTGTAACGCCGCACAC
CACGCCCCGCCGCATATCGCCACCATACGTCTGCAATATTCATGCATCCA
TTCAATCATCGCGCCCGAACATTCGAATCATAGTCAGCGACATTGATGGA
ACACTTCTCACCTCGAAGAAACGTCTTCACCCGAAGAATGAACCTCTTGT
GAAGCGTGCGGTCGAATCGGGAGTTTTGTTCGTTCCTGCCACAGGAAAAT
CAGCCAGCGGGGCCCTGAAAGCTCTTGGAGATTCTCTAACCTCCTTTTTG
ACTAACACGCAGCCCTCCATGCCGGGCATCTTCCTCAATGGTTTGTTAGT
AAAGGCGAATGGACGAGTGATATTCGAAAGAACCCTTGGCAAGTTGGACG
TGCTGAAAGTGTTGCAAGAGTTAAATCGTCTAGAGCTCACACCATTATTG
TATTCCGCTGATAACGTACTGGTGTACAAAAGATCATCCTACACGGACAT
GTTCATGGTATCCTACGAACCGGAACCGCAAGAGGCTGACTTGGAGAAAC
GAGCCGCACAAGTGCCTGTCCACAAGGTTCTGGTGGTTGATGAAACTGGA
GGAGATATACGGCGTTTCAGAAGTGATCTTTCTCGTTCATTGAAGAAAGT
GGCAACTATCACACAGGCACGACCAGATGTATTGGAGGTCTTGCCAAAAG
GGGCAAGCAAGGGAAAAGCGCTTCAACACTTGTTGTCGTACTTGCAGATT
TCGAAAGAGAGTGCTATGGCCGTTGGAGATGGGGAAAATGATTTGGAAAT
GTTGCAGGTCGCTGGACTAGCGGTTGCGACAGGAAACGCCGTTCCTACAT
TGATGGATGTGGCTCATCACGTTGTTTGTGGTAATGATCACGGAGCGGTT
GCAGATGCCATTAACAAGTTTGTACTTTAA

Coding sequence (CDS) from alignment at NODE_80_length_55642_cov_4.475869:9956..10885+

>Gcaud3184.t1 ID=Gcaud3184.t1|Name=Gcaud3184.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=930bp|location=Sequence derived from alignment at NODE_80_length_55642_cov_4.475869:9956..10885+ (Gracilaria caudata M_176_S67 male)
ATGTTGCTCTTTCATCTTCCACCGTTTCATAGACTTGTAACGCCGCACAC
CACGCCCCGCCGCATATCGCCACCATACGTCTGCAATATTCATGCATCCA
TTCAATCATCGCGCCCGAACATTCGAATCATAGTCAGCGACATTGATGGA
ACACTTCTCACCTCGAAGAAACGTCTTCACCCGAAGAATGAACCTCTTGT
GAAGCGTGCGGTCGAATCGGGAGTTTTGTTCGTTCCTGCCACAGGAAAAT
CAGCCAGCGGGGCCCTGAAAGCTCTTGGAGATTCTCTAACCTCCTTTTTG
ACTAACACGCAGCCCTCCATGCCGGGCATCTTCCTCAATGGTTTGTTAGT
AAAGGCGAATGGACGAGTGATATTCGAAAGAACCCTTGGCAAGTTGGACG
TGCTGAAAGTGTTGCAAGAGTTAAATCGTCTAGAGCTCACACCATTATTG
TATTCCGCTGATAACGTACTGGTGTACAAAAGATCATCCTACACGGACAT
GTTCATGGTATCCTACGAACCGGAACCGCAAGAGGCTGACTTGGAGAAAC
GAGCCGCACAAGTGCCTGTCCACAAGGTTCTGGTGGTTGATGAAACTGGA
GGAGATATACGGCGTTTCAGAAGTGATCTTTCTCGTTCATTGAAGAAAGT
GGCAACTATCACACAGGCACGACCAGATGTATTGGAGGTCTTGCCAAAAG
GGGCAAGCAAGGGAAAAGCGCTTCAACACTTGTTGTCGTACTTGCAGATT
TCGAAAGAGAGTGCTATGGCCGTTGGAGATGGGGAAAATGATTTGGAAAT
GTTGCAGGTCGCTGGACTAGCGGTTGCGACAGGAAACGCCGTTCCTACAT
TGATGGATGTGGCTCATCACGTTGTTTGTGGTAATGATCACGGAGCGGTT
GCAGATGCCATTAACAAGTTTGTACTTTAA