Gcaud3157.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3157.t1
Unique Name	Gcaud3157.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	259

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2177_length_6566_cov_4.745792	contig	NODE_2177_length_6566_cov_4.745792:1282..2195 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15726219
PFAMs	Methyltransf_11,Methyltransf_25
Max annot lvl	33208\|Metazoa
Evalue	2.3e-21
EggNOG OGs	COG0500@1\|root,KOG1541@2759\|Eukaryota,3A06N@33154\|Opisthokonta,3BUH6@33208\|Metazoa
Description	ubiE/COQ5 methyltransferase family
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3157	Gcaud3157	Gracilaria caudata M_176_S67 male	gene	NODE_2177_length_6566_cov_4.745792 1282..2195 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3157.t1	Gcaud3157.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2177_length_6566_cov_4.745792 1282..2195 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3157.t1.stop1	Gcaud3157.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2177_length_6566_cov_4.745792 1282..1284 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3157.t1.CDS1	Gcaud3157.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2177_length_6566_cov_4.745792 1282..1414 -
Gcaud3157.t1.CDS2	Gcaud3157.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_2177_length_6566_cov_4.745792 1552..2195 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3157.t1.exon1	Gcaud3157.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2177_length_6566_cov_4.745792 1282..1414 -
Gcaud3157.t1.exon2	Gcaud3157.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_2177_length_6566_cov_4.745792 1552..2195 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3157.t1.intron1	Gcaud3157.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_2177_length_6566_cov_4.745792 1415..1551 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3157.t1.start1	Gcaud3157.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2177_length_6566_cov_4.745792 2193..2195 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2177_length_6566_cov_4.745792:1282..2195-
coding sequence from alignment at NODE_2177_length_6566_cov_4.745792:1282..2195-

mRNA sequence

>Gcaud3157.t1 ID=Gcaud3157.t1|Name=Gcaud3157.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=259bp
MKETENKIEDFKMKHELHHIVTSFATPKQKTDAYDKWASTYDEDLLQEGN
PLWDVVSSKMLSLIKNNHKSSDVPVIVDAGCGTGAPASMLRKLAEKECVP
IRLIGYDLSEGMLEEARKKQVFDELHVGDFFGELPVRNESADYVLCSGVF
FEGHCGAEALVPVLGHLRQGGMGLISIRINSFEHKKDEYYKFIEQAGCDV
CELFVDQYFPQIKAMIQDMVVIVNDLNFGLVYFFIENVSVPTSSQQNDAL
KTVARAEP*

spliced messenger RNA

>Gcaud3157.t1 ID=Gcaud3157.t1|Name=Gcaud3157.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=777bp|location=Sequence derived from alignment at NODE_2177_length_6566_cov_4.745792:1282..2195- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGAAACGGAGAATAAGATTGAAGACTTCAAGATGAAGCATGAGTT
GCACCATATTGTAACATCATTTGCTACACCAAAACAAAAAACTGACGCGT
ACGACAAATGGGCTTCGACTTATGACGAAGATCTTTTGCAGGAAGGCAAT
CCGCTTTGGGATGTGGTGAGTAGCAAAATGCTAAGCCTCATCAAGAACAA
CCACAAGTCTAGTGACGTGCCTGTCATCGTCGACGCTGGATGCGGTACTG
GTGCTCCCGCAAGCATGTTGCGAAAACTCGCGGAGAAGGAATGTGTTCCC
ATTCGTCTCATTGGTTACGATCTCAGCGAGGGAATGCTGGAAGAGGCTCG
AAAGAAACAGGTGTTTGACGAGCTGCACGTTGGAGACTTCTTTGGAGAGC
TTCCAGTTCGTAACGAAAGTGCCGATTATGTGTTGTGTAGCGGAGTGTTC
TTTGAGGGCCATTGTGGAGCGGAGGCTTTGGTTCCAGTTCTCGGTCACCT
GCGCCAAGGAGGGATGGGATTGATCTCAATTCGTATCAATTCTTTCGAAC
ACAAGAAAGATGAGTACTACAAGTTCATCGAGCAGGCGGGGTGTGATGTG
TGTGAATTGTTTGTTGACCAGTACTTTCCGCAGATAAAAGCGATGATTCA
GGATATGGTCGTCATCGTAAATGATCTCAACTTTGGGTTAGTTTACTTCT
TCATTGAAAACGTTAGCGTTCCTACTTCCTCGCAACAAAATGACGCTCTG
AAGACCGTTGCGCGTGCGGAGCCGTGA

protein sequence of Gcaud3157.t1

>Gcaud3157.t1 ID=Gcaud3157.t1|Name=Gcaud3157.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=259bp
MKETENKIEDFKMKHELHHIVTSFATPKQKTDAYDKWASTYDEDLLQEGN
PLWDVVSSKMLSLIKNNHKSSDVPVIVDAGCGTGAPASMLRKLAEKECVP
IRLIGYDLSEGMLEEARKKQVFDELHVGDFFGELPVRNESADYVLCSGVF
FEGHCGAEALVPVLGHLRQGGMGLISIRINSFEHKKDEYYKFIEQAGCDV
CELFVDQYFPQIKAMIQDMVVIVNDLNFGLVYFFIENVSVPTSSQQNDAL
KTVARAEP*

mRNA from alignment at NODE_2177_length_6566_cov_4.745792:1282..2195-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3157.t1 ID=Gcaud3157.t1|Name=Gcaud3157.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=914bp|location=Sequence derived from alignment at NODE_2177_length_6566_cov_4.745792:1282..2195- (Gracilaria caudata M_176_S67 male)
ATGAAGGAAACGGAGAATAAGATTGAAGACTTCAAGATGAAGCATGAGTT
GCACCATATTGTAACATCATTTGCTACACCAAAACAAAAAACTGACGCGT
ACGACAAATGGGCTTCGACTTATGACGAAGATCTTTTGCAGGAAGGCAAT
CCGCTTTGGGATGTGGTGAGTAGCAAAATGCTAAGCCTCATCAAGAACAA
CCACAAGTCTAGTGACGTGCCTGTCATCGTCGACGCTGGATGCGGTACTG
GTGCTCCCGCAAGCATGTTGCGAAAACTCGCGGAGAAGGAATGTGTTCCC
ATTCGTCTCATTGGTTACGATCTCAGCGAGGGAATGCTGGAAGAGGCTCG
AAAGAAACAGGTGTTTGACGAGCTGCACGTTGGAGACTTCTTTGGAGAGC
TTCCAGTTCGTAACGAAAGTGCCGATTATGTGTTGTGTAGCGGAGTGTTC
TTTGAGGGCCATTGTGGAGCGGAGGCTTTGGTTCCAGTTCTCGGTCACCT
GCGCCAAGGAGGGATGGGATTGATCTCAATTCGTATCAATTCTTTCGAAC
ACAAGAAAGATGAGTACTACAAGTTCATCGAGCAGGCGGGGTGTGATGTG
TGTGAATTGTTTGTTGACCAGTACTTTCCGCAGATAAAAGCGATGTACGT
AGTGGTGAAAAAGCCGTGATTACTTGGGCTCAGTTTGGGTGGATGGATTC
TTTGTAGTATTCTCTACTACCCTTAATGTACTCGAAGACTCTCCAAATGC
ACACCCGAATTACGATCCAATTCCGAATCAGGATTCAGGATATGGTCGTC
ATCGTAAATGATCTCAACTTTGGGTTAGTTTACTTCTTCATTGAAAACGT
TAGCGTTCCTACTTCCTCGCAACAAAATGACGCTCTGAAGACCGTTGCGC
GTGCGGAGCCGTGA

Coding sequence (CDS) from alignment at NODE_2177_length_6566_cov_4.745792:1282..2195-

>Gcaud3157.t1 ID=Gcaud3157.t1|Name=Gcaud3157.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=777bp|location=Sequence derived from alignment at NODE_2177_length_6566_cov_4.745792:1282..2195- (Gracilaria caudata M_176_S67 male)
ATGAAGGAAACGGAGAATAAGATTGAAGACTTCAAGATGAAGCATGAGTT
GCACCATATTGTAACATCATTTGCTACACCAAAACAAAAAACTGACGCGT
ACGACAAATGGGCTTCGACTTATGACGAAGATCTTTTGCAGGAAGGCAAT
CCGCTTTGGGATGTGGTGAGTAGCAAAATGCTAAGCCTCATCAAGAACAA
CCACAAGTCTAGTGACGTGCCTGTCATCGTCGACGCTGGATGCGGTACTG
GTGCTCCCGCAAGCATGTTGCGAAAACTCGCGGAGAAGGAATGTGTTCCC
ATTCGTCTCATTGGTTACGATCTCAGCGAGGGAATGCTGGAAGAGGCTCG
AAAGAAACAGGTGTTTGACGAGCTGCACGTTGGAGACTTCTTTGGAGAGC
TTCCAGTTCGTAACGAAAGTGCCGATTATGTGTTGTGTAGCGGAGTGTTC
TTTGAGGGCCATTGTGGAGCGGAGGCTTTGGTTCCAGTTCTCGGTCACCT
GCGCCAAGGAGGGATGGGATTGATCTCAATTCGTATCAATTCTTTCGAAC
ACAAGAAAGATGAGTACTACAAGTTCATCGAGCAGGCGGGGTGTGATGTG
TGTGAATTGTTTGTTGACCAGTACTTTCCGCAGATAAAAGCGATGATTCA
GGATATGGTCGTCATCGTAAATGATCTCAACTTTGGGTTAGTTTACTTCT
TCATTGAAAACGTTAGCGTTCCTACTTCCTCGCAACAAAATGACGCTCTG
AAGACCGTTGCGCGTGCGGAGCCGTGA