Gcaud3147.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3147.t1
Unique Name	Gcaud3147.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	258

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_65_length_57458_cov_4.409765	contig	NODE_65_length_57458_cov_4.409765:51727..52500 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI42355
PFAMs	PIF1
Max annot lvl	4776\|Peronosporales
Evalue	4.03e-16
EggNOG OGs	COG0507@1\|root,KOG0987@2759\|Eukaryota,3QHAX@4776\|Peronosporales
Description	G-quadruplex DNA unwinding
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3147	Gcaud3147	Gracilaria caudata M_176_S67 male	gene	NODE_65_length_57458_cov_4.409765 51727..52500 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3147.t1.stop1	Gcaud3147.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_65_length_57458_cov_4.409765 51727..51729 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3147.t1.CDS1	Gcaud3147.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_65_length_57458_cov_4.409765 51727..52500 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3147.t1.exon1	Gcaud3147.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_65_length_57458_cov_4.409765 51727..52500 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3147.t1.start1	Gcaud3147.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_65_length_57458_cov_4.409765 52498..52500 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3147.t1	Gcaud3147.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_65_length_57458_cov_4.409765 51727..52500 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_65_length_57458_cov_4.409765:51727..52500-
coding sequence from alignment at NODE_65_length_57458_cov_4.409765:51727..52500-

mRNA sequence

>Gcaud3147.t1 ID=Gcaud3147.t1|Name=Gcaud3147.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MAVNWFQLEKLSQSFGIKPIVSVARVTANDGMVISEDLLKSMFTLHDMQT
GGLQILLPLFPNMPVRVSQNSAVGIGIANGTTGELSGVQFPSNTTFHDAN
IFNVDCIIASNFSVVAFIRSKEIMKALPRPFSNIPSRYKDVFPVFPYCQD
GVYVKLKKSENVKVQVSQLPFVPAYSSTTYKMQGKTVENLIAYPFIRGCR
GLPSRASLYVVLSRVRAMKDLFLTKPISRSTFEYFKPTDVLLTEHERLIE
IETQHSN*

spliced messenger RNA

>Gcaud3147.t1 ID=Gcaud3147.t1|Name=Gcaud3147.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_65_length_57458_cov_4.409765:51727..52500- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTCAACTGGTTTCAGCTCGAGAAACTAAGCCAAAGCTTTGGTAT
CAAACCAATTGTAAGTGTGGCACGCGTTACTGCCAATGATGGAATGGTAA
TCTCTGAAGATCTCCTCAAGTCAATGTTCACCCTACATGATATGCAAACC
GGTGGACTACAAATACTACTACCATTGTTTCCAAACATGCCAGTTCGTGT
TTCACAAAATTCAGCTGTGGGAATTGGAATTGCTAATGGAACTACCGGGG
AATTAAGTGGAGTACAATTCCCATCTAATACAACATTTCATGACGCGAAC
ATTTTCAACGTAGACTGCATCATTGCTTCTAATTTTTCTGTGGTTGCATT
CATAAGATCTAAAGAGATTATGAAGGCACTACCAAGACCATTTTCAAACA
TTCCTTCAAGATACAAGGACGTATTTCCTGTATTTCCTTACTGCCAAGAT
GGTGTTTACGTGAAATTGAAGAAATCAGAGAACGTGAAGGTTCAAGTTTC
GCAACTTCCTTTTGTTCCTGCGTACTCGTCAACAACCTATAAGATGCAAG
GCAAAACAGTTGAAAACCTCATCGCATATCCATTTATTCGAGGTTGCAGG
GGCCTGCCATCTAGAGCTTCGCTGTACGTGGTTTTGTCAAGAGTTCGAGC
AATGAAAGATTTGTTTCTCACTAAACCAATTTCGAGGTCAACTTTCGAGT
ACTTTAAACCCACTGATGTTCTTTTAACCGAGCACGAAAGGCTAATTGAA
ATCGAAACACAACATAGTAATTAA

protein sequence of Gcaud3147.t1

>Gcaud3147.t1 ID=Gcaud3147.t1|Name=Gcaud3147.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MAVNWFQLEKLSQSFGIKPIVSVARVTANDGMVISEDLLKSMFTLHDMQT
GGLQILLPLFPNMPVRVSQNSAVGIGIANGTTGELSGVQFPSNTTFHDAN
IFNVDCIIASNFSVVAFIRSKEIMKALPRPFSNIPSRYKDVFPVFPYCQD
GVYVKLKKSENVKVQVSQLPFVPAYSSTTYKMQGKTVENLIAYPFIRGCR
GLPSRASLYVVLSRVRAMKDLFLTKPISRSTFEYFKPTDVLLTEHERLIE
IETQHSN*

mRNA from alignment at NODE_65_length_57458_cov_4.409765:51727..52500-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3147.t1 ID=Gcaud3147.t1|Name=Gcaud3147.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_65_length_57458_cov_4.409765:51727..52500- (Gracilaria caudata M_176_S67 male)
ATGGCGGTCAACTGGTTTCAGCTCGAGAAACTAAGCCAAAGCTTTGGTAT
CAAACCAATTGTAAGTGTGGCACGCGTTACTGCCAATGATGGAATGGTAA
TCTCTGAAGATCTCCTCAAGTCAATGTTCACCCTACATGATATGCAAACC
GGTGGACTACAAATACTACTACCATTGTTTCCAAACATGCCAGTTCGTGT
TTCACAAAATTCAGCTGTGGGAATTGGAATTGCTAATGGAACTACCGGGG
AATTAAGTGGAGTACAATTCCCATCTAATACAACATTTCATGACGCGAAC
ATTTTCAACGTAGACTGCATCATTGCTTCTAATTTTTCTGTGGTTGCATT
CATAAGATCTAAAGAGATTATGAAGGCACTACCAAGACCATTTTCAAACA
TTCCTTCAAGATACAAGGACGTATTTCCTGTATTTCCTTACTGCCAAGAT
GGTGTTTACGTGAAATTGAAGAAATCAGAGAACGTGAAGGTTCAAGTTTC
GCAACTTCCTTTTGTTCCTGCGTACTCGTCAACAACCTATAAGATGCAAG
GCAAAACAGTTGAAAACCTCATCGCATATCCATTTATTCGAGGTTGCAGG
GGCCTGCCATCTAGAGCTTCGCTGTACGTGGTTTTGTCAAGAGTTCGAGC
AATGAAAGATTTGTTTCTCACTAAACCAATTTCGAGGTCAACTTTCGAGT
ACTTTAAACCCACTGATGTTCTTTTAACCGAGCACGAAAGGCTAATTGAA
ATCGAAACACAACATAGTAATTAA

Coding sequence (CDS) from alignment at NODE_65_length_57458_cov_4.409765:51727..52500-

>Gcaud3147.t1 ID=Gcaud3147.t1|Name=Gcaud3147.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_65_length_57458_cov_4.409765:51727..52500- (Gracilaria caudata M_176_S67 male)
ATGGCGGTCAACTGGTTTCAGCTCGAGAAACTAAGCCAAAGCTTTGGTAT
CAAACCAATTGTAAGTGTGGCACGCGTTACTGCCAATGATGGAATGGTAA
TCTCTGAAGATCTCCTCAAGTCAATGTTCACCCTACATGATATGCAAACC
GGTGGACTACAAATACTACTACCATTGTTTCCAAACATGCCAGTTCGTGT
TTCACAAAATTCAGCTGTGGGAATTGGAATTGCTAATGGAACTACCGGGG
AATTAAGTGGAGTACAATTCCCATCTAATACAACATTTCATGACGCGAAC
ATTTTCAACGTAGACTGCATCATTGCTTCTAATTTTTCTGTGGTTGCATT
CATAAGATCTAAAGAGATTATGAAGGCACTACCAAGACCATTTTCAAACA
TTCCTTCAAGATACAAGGACGTATTTCCTGTATTTCCTTACTGCCAAGAT
GGTGTTTACGTGAAATTGAAGAAATCAGAGAACGTGAAGGTTCAAGTTTC
GCAACTTCCTTTTGTTCCTGCGTACTCGTCAACAACCTATAAGATGCAAG
GCAAAACAGTTGAAAACCTCATCGCATATCCATTTATTCGAGGTTGCAGG
GGCCTGCCATCTAGAGCTTCGCTGTACGTGGTTTTGTCAAGAGTTCGAGC
AATGAAAGATTTGTTTCTCACTAAACCAATTTCGAGGTCAACTTTCGAGT
ACTTTAAACCCACTGATGTTCTTTTAACCGAGCACGAAAGGCTAATTGAA
ATCGAAACACAACATAGTAATTAA