Gcaud3136.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3136.t1
Unique Name	Gcaud3136.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	256

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_824_length_17464_cov_5.742762	contig	NODE_824_length_17464_cov_5.742762:2412..3956 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3136	Gcaud3136	Gracilaria caudata M_176_S67 male	gene	NODE_824_length_17464_cov_5.742762 2412..3956 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3136.t1	Gcaud3136.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_824_length_17464_cov_5.742762 2412..3956 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3136.t1.start1	Gcaud3136.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_824_length_17464_cov_5.742762 2412..2414 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3136.t1.CDS1	Gcaud3136.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_824_length_17464_cov_5.742762 2412..2931 +
Gcaud3136.t1.CDS2	Gcaud3136.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_824_length_17464_cov_5.742762 3709..3956 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3136.t1.exon1	Gcaud3136.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_824_length_17464_cov_5.742762 2412..2931 +
Gcaud3136.t1.exon2	Gcaud3136.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_824_length_17464_cov_5.742762 3709..3956 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3136.t1.intron1	Gcaud3136.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_824_length_17464_cov_5.742762 2932..3708 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3136.t1.stop1	Gcaud3136.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_824_length_17464_cov_5.742762 3954..3956 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_824_length_17464_cov_5.742762:2412..3956+
coding sequence from alignment at NODE_824_length_17464_cov_5.742762:2412..3956+

mRNA sequence

>Gcaud3136.t1 ID=Gcaud3136.t1|Name=Gcaud3136.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=256bp
MNPCEGNNSGDAEEQLLHHEDCQRYLYLIMLPSPERTQIVAEVLPDASIR
LPVLPICSHKWWRAGVTDLEEMMESFLAVYLRFVRELWATGRRGKYVLWG
ETYDMVSVLLFEWGEGEKSIANGRAMKWISMKEVKEANWVETEKGLGLDM
KHVVMRAMKDISGEVRLRLPPWRHEEERLRRKVWKRWERLVGYEEFGKLL
CLVEVLVDSAALDFFLKDAEFQDEDAYVVNGRLRHVAEFMKDTLDKIKPV
TATFE*

spliced messenger RNA

>Gcaud3136.t1 ID=Gcaud3136.t1|Name=Gcaud3136.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_824_length_17464_cov_5.742762:2412..3956+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCGTGCGAAGGAAATAATTCTGGTGATGCCGAGGAACAGTTGCT
TCACCATGAAGATTGTCAGAGATACCTCTACCTAATAATGCTTCCGTCGC
CTGAACGAACGCAAATCGTGGCAGAAGTGCTCCCAGATGCATCTATTAGA
TTGCCAGTTTTGCCAATCTGTTCTCATAAATGGTGGAGAGCCGGAGTAAC
AGACCTAGAAGAGATGATGGAATCTTTTCTTGCAGTGTATTTGCGATTTG
TACGGGAGTTGTGGGCGACAGGTCGCAGAGGTAAATATGTATTGTGGGGA
GAGACATATGATATGGTTTCGGTGCTACTGTTCGAATGGGGAGAAGGGGA
GAAAAGTATTGCGAATGGGAGAGCGATGAAGTGGATATCGATGAAGGAGG
TGAAGGAGGCGAACTGGGTTGAAACGGAGAAGGGACTTGGTCTGGACATG
AAACATGTGGTGATGAGAGCGATGAAAGATATCAGTGGAGAAGTACGGTt
gaggttaccgccatggcgacATGAGGAGGAACGACTTCGTAGAAAGGTAT
GGAAACGTTGGGAGAGACTTGTTGGTTATGAGGAATTTGGGAAACTGTTA
TGTCTTGTGGAAGTCTTGGTAGATTCAGCTGCTCTGGACTTCTTTTTGAA
AGATGCTGAGTTTCAAGATGAAGACGCGTATGTAGTGAACGGCCGTCTTC
GCCATGTAGCGGAGTTTATGAAAGATACCCTAGACAAAATCAAGCCTGTT
ACAGCAACGTTTGAGTGA

protein sequence of Gcaud3136.t1

>Gcaud3136.t1 ID=Gcaud3136.t1|Name=Gcaud3136.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=256bp
MNPCEGNNSGDAEEQLLHHEDCQRYLYLIMLPSPERTQIVAEVLPDASIR
LPVLPICSHKWWRAGVTDLEEMMESFLAVYLRFVRELWATGRRGKYVLWG
ETYDMVSVLLFEWGEGEKSIANGRAMKWISMKEVKEANWVETEKGLGLDM
KHVVMRAMKDISGEVRLRLPPWRHEEERLRRKVWKRWERLVGYEEFGKLL
CLVEVLVDSAALDFFLKDAEFQDEDAYVVNGRLRHVAEFMKDTLDKIKPV
TATFE*

mRNA from alignment at NODE_824_length_17464_cov_5.742762:2412..3956+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3136.t1 ID=Gcaud3136.t1|Name=Gcaud3136.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at NODE_824_length_17464_cov_5.742762:2412..3956+ (Gracilaria caudata M_176_S67 male)
ATGAATCCGTGCGAAGGAAATAATTCTGGTGATGCCGAGGAACAGTTGCT
TCACCATGAAGATTGTCAGAGATACCTCTACCTAATAATGCTTCCGTCGC
CTGAACGAACGCAAATCGTGGCAGAAGTGCTCCCAGATGCATCTATTAGA
TTGCCAGTTTTGCCAATCTGTTCTCATAAATGGTGGAGAGCCGGAGTAAC
AGACCTAGAAGAGATGATGGAATCTTTTCTTGCAGTGTATTTGCGATTTG
TACGGGAGTTGTGGGCGACAGGTCGCAGAGGTAAATATGTATTGTGGGGA
GAGACATATGATATGGTTTCGGTGCTACTGTTCGAATGGGGAGAAGGGGA
GAAAAGTATTGCGAATGGGAGAGCGATGAAGTGGATATCGATGAAGGAGG
TGAAGGAGGCGAACTGGGTTGAAACGGAGAAGGGACTTGGTCTGGACATG
AAACATGTGGTGATGAGAGCGATGAAAGATATCAGTGGAGAAGTACGGTt
gaggttaccgccatggcgacgtatgggttggttctgcaggatgatgaaat
gggtgagggaggtgacaaagtgtgaaacaaatgacaaagagctttaccgt
actttcataaagtttaaggacgatgaacattctgtggtatggagctgcac
gttggacctgtcgaaaacgtcttttggatgcaaaagagaggaaagaaatg
aatttgtgtttatcaaagccggactacctattatacaggaagctcgacga
acagcgactgttgcaaaagtacttgatgaactcaatgttgtaccggaagt
gatcgccgtgaatgagaatgatgggatgtttatgcagagaagtgcaggaa
ccgacctattcctaatcttggattcaggagattttctggatgtggaacta
ttggttaatacggttttaagagtgcaagaagtttcggctgataatctgga
agaactgaaggcgggtggggtgaaggttcgagacagcgaatgggctgctg
ccaacctccatgacatgctgtatcgtgaggttctggataaagtagtgaaa
ggcagcgaaatagacgagaagtcacttcatgaagttcgttgtggtgaaga
agagttcttaaaggcgtgcaagaagatctcgagttatgggtttccaaaca
ctctggtacatggggacctctttcaagataatattggtattgcaacacag
gaggcaaacggtggcttccggtttttcgactgggacatgtgcgtcattgg
acacccacttttggacataagaaacgtaatTGATTTGGTCTCAAAAGATG
AGGAGGAACGACTTCGTAGAAAGGTATGGAAACGTTGGGAGAGACTTGTT
GGTTATGAGGAATTTGGGAAACTGTTATGTCTTGTGGAAGTCTTGGTAGA
TTCAGCTGCTCTGGACTTCTTTTTGAAAGATGCTGAGTTTCAAGATGAAG
ACGCGTATGTAGTGAACGGCCGTCTTCGCCATGTAGCGGAGTTTATGAAA
GATACCCTAGACAAAATCAAGCCTGTTACAGCAACGTTTGAGTGA

Coding sequence (CDS) from alignment at NODE_824_length_17464_cov_5.742762:2412..3956+

>Gcaud3136.t1 ID=Gcaud3136.t1|Name=Gcaud3136.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=768bp|location=Sequence derived from alignment at NODE_824_length_17464_cov_5.742762:2412..3956+ (Gracilaria caudata M_176_S67 male)
ATGAATCCGTGCGAAGGAAATAATTCTGGTGATGCCGAGGAACAGTTGCT
TCACCATGAAGATTGTCAGAGATACCTCTACCTAATAATGCTTCCGTCGC
CTGAACGAACGCAAATCGTGGCAGAAGTGCTCCCAGATGCATCTATTAGA
TTGCCAGTTTTGCCAATCTGTTCTCATAAATGGTGGAGAGCCGGAGTAAC
AGACCTAGAAGAGATGATGGAATCTTTTCTTGCAGTGTATTTGCGATTTG
TACGGGAGTTGTGGGCGACAGGTCGCAGAGGTAAATATGTATTGTGGGGA
GAGACATATGATATGGTTTCGGTGCTACTGTTCGAATGGGGAGAAGGGGA
GAAAAGTATTGCGAATGGGAGAGCGATGAAGTGGATATCGATGAAGGAGG
TGAAGGAGGCGAACTGGGTTGAAACGGAGAAGGGACTTGGTCTGGACATG
AAACATGTGGTGATGAGAGCGATGAAAGATATCAGTGGAGAAGTACGGTt
gaggttaccgccatggcgacATGAGGAGGAACGACTTCGTAGAAAGGTAT
GGAAACGTTGGGAGAGACTTGTTGGTTATGAGGAATTTGGGAAACTGTTA
TGTCTTGTGGAAGTCTTGGTAGATTCAGCTGCTCTGGACTTCTTTTTGAA
AGATGCTGAGTTTCAAGATGAAGACGCGTATGTAGTGAACGGCCGTCTTC
GCCATGTAGCGGAGTTTATGAAAGATACCCTAGACAAAATCAAGCCTGTT
ACAGCAACGTTTGAGTGA