Gcaud3122.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3122.t1
Unique NameGcaud3122.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1662_length_9224_cov_4.268258contigNODE_1662_length_9224_cov_4.268258:1081..1827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3122Gcaud3122Gracilaria caudata M_176_S67 malegeneNODE_1662_length_9224_cov_4.268258 1081..1827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3122.t1Gcaud3122.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1662_length_9224_cov_4.268258 1081..1827 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3122.t1.start1Gcaud3122.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1662_length_9224_cov_4.268258 1081..1083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3122.t1.CDS1Gcaud3122.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1662_length_9224_cov_4.268258 1081..1484 +
Gcaud3122.t1.CDS2Gcaud3122.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1662_length_9224_cov_4.268258 1583..1629 +
Gcaud3122.t1.CDS3Gcaud3122.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1662_length_9224_cov_4.268258 1745..1827 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3122.t1.exon1Gcaud3122.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1662_length_9224_cov_4.268258 1081..1484 +
Gcaud3122.t1.exon2Gcaud3122.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1662_length_9224_cov_4.268258 1583..1629 +
Gcaud3122.t1.exon3Gcaud3122.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1662_length_9224_cov_4.268258 1745..1827 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3122.t1.intron1Gcaud3122.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1662_length_9224_cov_4.268258 1485..1582 +
Gcaud3122.t1.intron2Gcaud3122.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1662_length_9224_cov_4.268258 1630..1744 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3122.t1.stop1Gcaud3122.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1662_length_9224_cov_4.268258 1825..1827 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3122.t1 ID=Gcaud3122.t1|Name=Gcaud3122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=178bp
MRQAVVTVLADAVQGETEQGVAHIRRTLHPSVWHALTAVLSGQCHHTPSS
TQASDLLDCALLAHEQQHQWRIPVISGVFGSPTLPFLSGAVLQSMNEDWM
LYLTHISNERIARAAMHELTREGRQAQVMERVSTVRGAPGAGDELRLRYP
CCANDFIRGCAIRRKCEAGEHEATRCL*
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spliced messenger RNA

>Gcaud3122.t1 ID=Gcaud3122.t1|Name=Gcaud3122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_1662_length_9224_cov_4.268258:1081..1827+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACAAGCCGTCGTCACCGTGCTTGCGGACGCCGTTCAGGGAGAGAC
AGAACAAGGTGTGGCGCACATACGTCGCACGCTCCATCCTTCCGTATGGC
ACGCGTTGACGGCCGTGTTGAGCGGTCAGTGTCACCACACCCCAAGCTCC
ACCCAAGCCAGCGATCTGCTTGATTGTGCGTTGTTGGCACACGAGCAGCA
GCATCAATGGCGCATCCCGGTGATTTCGGGCGTGTTCGGTTCTCCTACAC
TACCTTTTCTCAGCGGTGCTGTGCTACAAAGCATGAATGAAGATTGGATG
CTGTACTTGACGCACATTTCAAACGAGCGAATTGCGCGTGCGGCCATGCA
CGAACTCACGCGAGAAGGGCGCCAGGCGCAGGTTATGGAGCGCGTTAGCA
CCGTGCGGGGCGCGCCAGGGGCTGGTGATGAATTGAGATTGCGCTACCCT
TGCTGTGCTAATGATTTCATCAGAGGGTGTGCAATACGACGCAAATGTGA
GGCAGGCGAGCACGAAGCCACACGCTGTCTGTAA
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protein sequence of Gcaud3122.t1

>Gcaud3122.t1 ID=Gcaud3122.t1|Name=Gcaud3122.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MRQAVVTVLADAVQGETEQGVAHIRRTLHPSVWHALTAVLSGQCHHTPSS
TQASDLLDCALLAHEQQHQWRIPVISGVFGSPTLPFLSGAVLQSMNEDWM
LYLTHISNERIARAAMHELTREGRQAQVMERVSTVRGAPGAGDELRLRYP
CCANDFIRGCAIRRKCEAGEHEATRCL*
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mRNA from alignment at NODE_1662_length_9224_cov_4.268258:1081..1827+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3122.t1 ID=Gcaud3122.t1|Name=Gcaud3122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_1662_length_9224_cov_4.268258:1081..1827+ (Gracilaria caudata M_176_S67 male)
ATGAGACAAGCCGTCGTCACCGTGCTTGCGGACGCCGTTCAGGGAGAGAC
AGAACAAGGTGTGGCGCACATACGTCGCACGCTCCATCCTTCCGTATGGC
ACGCGTTGACGGCCGTGTTGAGCGGTCAGTGTCACCACACCCCAAGCTCC
ACCCAAGCCAGCGATCTGCTTGATTGTGCGTTGTTGGCACACGAGCAGCA
GCATCAATGGCGCATCCCGGTGATTTCGGGCGTGTTCGGTTCTCCTACAC
TACCTTTTCTCAGCGGTGCTGTGCTACAAAGCATGAATGAAGATTGGATG
CTGTACTTGACGCACATTTCAAACGAGCGAATTGCGCGTGCGGCCATGCA
CGAACTCACGCGAGAAGGGCGCCAGGCGCAGGTTATGGAGCGCGTTAGCA
CCGTGTTTGTCTGTGCGCAACACCACCGTAGCCACCTATCGCTGCTACCG
ATGCATATCGTTGAAAGCGCGCTCATTCCCTGGCTGCTGCTCGCTGAGAC
AGGCGGGGCGCGCCAGGGGCTGGTGATGAATTGAGATTGCGCTACCCTTG
TAAGTTCACAATGTTTGAACGATACCATTTTACATATCGGCTTTTTTGCA
TATCGAAAGCATCGCAAGAACGGTTTTAAGGCAAGTGACGATCTAACTCT
AGTAAATGATTCAGGCTGTGCTAATGATTTCATCAGAGGGTGTGCAATAC
GACGCAAATGTGAGGCAGGCGAGCACGAAGCCACACGCTGTCTGTAA
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Coding sequence (CDS) from alignment at NODE_1662_length_9224_cov_4.268258:1081..1827+

>Gcaud3122.t1 ID=Gcaud3122.t1|Name=Gcaud3122.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=534bp|location=Sequence derived from alignment at NODE_1662_length_9224_cov_4.268258:1081..1827+ (Gracilaria caudata M_176_S67 male)
ATGAGACAAGCCGTCGTCACCGTGCTTGCGGACGCCGTTCAGGGAGAGAC
AGAACAAGGTGTGGCGCACATACGTCGCACGCTCCATCCTTCCGTATGGC
ACGCGTTGACGGCCGTGTTGAGCGGTCAGTGTCACCACACCCCAAGCTCC
ACCCAAGCCAGCGATCTGCTTGATTGTGCGTTGTTGGCACACGAGCAGCA
GCATCAATGGCGCATCCCGGTGATTTCGGGCGTGTTCGGTTCTCCTACAC
TACCTTTTCTCAGCGGTGCTGTGCTACAAAGCATGAATGAAGATTGGATG
CTGTACTTGACGCACATTTCAAACGAGCGAATTGCGCGTGCGGCCATGCA
CGAACTCACGCGAGAAGGGCGCCAGGCGCAGGTTATGGAGCGCGTTAGCA
CCGTGCGGGGCGCGCCAGGGGCTGGTGATGAATTGAGATTGCGCTACCCT
TGCTGTGCTAATGATTTCATCAGAGGGTGTGCAATACGACGCAAATGTGA
GGCAGGCGAGCACGAAGCCACACGCTGTCTGTAA
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